BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149491.7 - phase: 0 
         (114 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g16980 RNA Polymerase II subunit 14.5 kD, putative                 229  2e-61
At4g16265 unknown protein                                             228  3e-61
At2g38560 putative elongation factor                                   28  0.97
At1g12040 leucine-rich repeat/extensin 1 (LRX1)                        27  1.3
At2g17000 hypothetical protein                                         27  2.2
At5g09620 putative protein                                             26  2.8
At2g44390 unknown protein                                              26  3.7
At4g34290 unknown protein                                              25  6.3
At4g37810 hypothetical protein                                         25  8.2
At4g34390 extra-large G-protein - like                                 25  8.2
At4g01270 putative RING zinc finger protein                            25  8.2

>At3g16980 RNA Polymerase II subunit 14.5 kD, putative
          Length = 114

 Score =  229 bits (583), Expect = 2e-61
 Identities = 101/114 (88%), Positives = 108/114 (94%)

Query: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQE ADN CVYRNE+HHSV+ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
           DVA+DPTLPRTKAVRC +C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114


>At4g16265 unknown protein
          Length = 114

 Score =  228 bits (582), Expect = 3e-61
 Identities = 100/114 (87%), Positives = 108/114 (94%)

Query: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
           MSTMKFCRECNNILYPKED+EQ ILLYACRNCDHQEAADN CVYRNE+HHSV+E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
           DVA+DPTLPRTKAVRC +C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114


>At2g38560 putative elongation factor
          Length = 378

 Score = 27.7 bits (60), Expect = 0.97
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 71  TKAVRCVQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWR 113
           T   +C +C   +  ++Q   R  +E MT +  C   NC + W+
Sbjct: 335 TDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCV--NCDNHWK 376


>At1g12040 leucine-rich repeat/extensin 1 (LRX1)
          Length = 744

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 63  AADPTLPRTKAVRCVQCNHGEAVFFQATARG-EEGMTLFFVCCNPNCG 109
           A  P+ P+T+ V  +  NH +   + A+  G    + LF +  N  CG
Sbjct: 90  APSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCG 137


>At2g17000 hypothetical protein
          Length = 849

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 40  NFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMT 98
           +F  YR EI   V E T+  +DV+ +  L  +K  R         VFF+  + G   M+
Sbjct: 73  DFPQYREEITLDVNEETEETEDVSNNNNLSGSKETR---------VFFKINSSGTNNMS 122


>At5g09620 putative protein
          Length = 531

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 5/47 (10%)

Query: 19  DREQKILLYACRNCDHQEAADNFCVYRNEIHH--SVAERTQVLQDVA 63
           D+EQ++L    +N  HQ+      +++N++HH   V  + Q+LQ  A
Sbjct: 253 DQEQQMLH---QNQLHQQQQQQEAIHQNQLHHQQEVIHQNQLLQQEA 296


>At2g44390 unknown protein
          Length = 209

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4   MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNE 47
           M  C  C      +ED  + + +Y C+ CD+     +  VY ++
Sbjct: 112 MFICNVC------EEDMSENLWVYYCKECDYGTHVHSCAVYEDD 149


>At4g34290 unknown protein
          Length = 144

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 56 TQVLQDVAADPTLPRTKAVR 75
          +Q +QDV   P +PRT+A++
Sbjct: 75 SQAMQDVVGVPEIPRTQALK 94


>At4g37810 hypothetical protein
          Length = 128

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (63%)

Query: 69 PRTKAVRCVQCNHGEAV 85
          PR + VRC  C H EA+
Sbjct: 58 PRCERVRCRSCGHCEAI 74


>At4g34390 extra-large G-protein - like
          Length = 838

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 2/61 (3%)

Query: 5   KFCRECNNILYP--KEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDV 62
           KF R  ++IL P     R  K  L+ C+     +  DN   Y  EI     E T + Q++
Sbjct: 768 KFKRLYDSILEPVNMRGRSFKPKLFVCQVSLESDTVDNALRYAREILKWHVEETSMFQEM 827

Query: 63  A 63
           +
Sbjct: 828 S 828


>At4g01270 putative RING zinc finger protein
          Length = 506

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 33  DHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCN 80
           ++ E +D       ++     +R + LQ+++    L + K+  C+Q N
Sbjct: 122 ENVEVSDKLHQCNEQLKEDKVKRWEALQEISTTQHLLKLKSEECIQLN 169


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,555,235
Number of Sequences: 26719
Number of extensions: 83477
Number of successful extensions: 243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 11,318,596
effective HSP length: 90
effective length of query: 24
effective length of database: 8,913,886
effective search space: 213933264
effective search space used: 213933264
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)