BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149490.11 + phase: 0
(304 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800 chitinase - like protein 42 4e-04
At4g19810 putative chitinase 33 0.25
At4g32210 putative protein 32 0.33
At5g14810 putative protein 32 0.43
At4g19720 putative protein 31 0.73
At1g05200 putative glutamate receptor protein / ligand-gated ion... 31 0.73
At3g29400 unknown protein (At3g29400) 30 1.6
At3g56460 quinone reductase-like protein 30 2.1
At4g19730 putative protein 29 2.8
At4g19820 putative chitinase 29 3.6
At3g26720 alpha-mannosidase, putative 29 3.6
At3g03450 RGA1-like protein 29 3.6
At2g37670 putative WD-40 repeat protein 29 3.6
At5g13960 unknown protein (At5g13960) 28 4.7
At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1 28 4.7
At1g71400 disease resistance like protein 28 6.2
At4g23841 putative protein 28 8.0
>At4g19800 chitinase - like protein
Length = 398
Score = 42.0 bits (97), Expect = 4e-04
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 40 FKGVKFSDVPINPNVNFHFILSFAIDYDTSSPPSPTNGNFNIFWDTQNLSPSEV--SFIK 97
F F I+ ++ H +FA D + S + I T N +P ++
Sbjct: 13 FPATDFPATDIDSSLFTHLFCTFA-DLEAES--------YEITIATWNQAPFHAFTETVQ 63
Query: 98 NQNPNVKVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEH 155
+NP+VK LS+GG D + S+ DS S S++T + ++Y G+D+D+E+
Sbjct: 64 QRNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTIT-VARSYGFHGLDLDWEY 120
>At4g19810 putative chitinase
Length = 379
Score = 32.7 bits (73), Expect = 0.25
Identities = 17/63 (26%), Positives = 36/63 (56%), Gaps = 7/63 (11%)
Query: 96 IKNQNPNVKVALSLGG---DTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVD 152
++ +NP+VK LS+GG D + P+S S++ +++ + ++Y G+D+D
Sbjct: 83 VQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSI----RVARSYGFHGLDLD 138
Query: 153 YEH 155
+E+
Sbjct: 139 WEY 141
>At4g32210 putative protein
Length = 1086
Score = 32.3 bits (72), Expect = 0.33
Identities = 34/176 (19%), Positives = 74/176 (41%), Gaps = 18/176 (10%)
Query: 127 DSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAE--CIGRLITTLKNNNVISFAS 184
D V+++++ LT + +T ++ +E I FAE + + L+ + ++
Sbjct: 181 DEHVNDSIAKLTQLQETEGIEEYHARFE-LISTRLNFAEDYLVSVYLAGLRTDTQLNVRM 239
Query: 185 IAPFDDAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSNYNSEKVL 244
P + L L + Y A+ KS + + D Y K++ + +S
Sbjct: 240 FGP----QTIQQCLMLGRLYE----------MAHPKSVLIRKKSDDYQKEAQHVSSNAAG 285
Query: 245 VSFVSDGSTGLG-PGNGFLDGCRMLKSQQKLNGIFVYSADDSKADGFRYEKEAQEV 299
S ++DG+ +G G+ FL G ++++ ++ DD+ + +A +V
Sbjct: 286 TSMINDGNCMIGNDGDRFLSGSDLVENAVATVKKYLVEIDDAMSSDDDQNSDAGDV 341
>At5g14810 putative protein
Length = 716
Score = 32.0 bits (71), Expect = 0.43
Identities = 34/176 (19%), Positives = 74/176 (41%), Gaps = 18/176 (10%)
Query: 127 DSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAE--CIGRLITTLKNNNVISFAS 184
D V+++++ LT + +T ++ +E I FAE + + L+ + ++
Sbjct: 181 DEHVNDSIAKLTQLQETEGIEEYHARFE-LISTRLNFAEDYLVSVYLAGLRTDTQLNVRM 239
Query: 185 IAPFDDAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSNYNSEKVL 244
P + L L + Y A+ KS + + D Y K++ + +S
Sbjct: 240 FGP----QTIQQCLMLGRLYE----------MAHPKSVLIRKESDDYQKEAQHVSSNAAG 285
Query: 245 VSFVSDGSTGLG-PGNGFLDGCRMLKSQQKLNGIFVYSADDSKADGFRYEKEAQEV 299
S ++DG+ +G G+ FL G ++++ ++ DD+ + +A +V
Sbjct: 286 TSMINDGNCMIGNDGDRFLSGSDLVENAVATVKKYLVEIDDAVSSDDDQNSDAGDV 341
>At4g19720 putative protein
Length = 421
Score = 31.2 bits (69), Expect = 0.73
Identities = 18/63 (28%), Positives = 35/63 (54%), Gaps = 7/63 (11%)
Query: 96 IKNQNPNVKVALSLGGDTVQGDPVNFI---PSSIDSWVSNAVSSLTSIIKTYNLDGIDVD 152
+K +NP+V+ LS+GG + P+S S++ +A+SS + Y DG+D+
Sbjct: 72 VKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISS----ARYYRFDGLDLV 127
Query: 153 YEH 155
+++
Sbjct: 128 WKY 130
>At1g05200 putative glutamate receptor protein / ligand-gated ion
channel protein (AtGLR3.4)
Length = 959
Score = 31.2 bits (69), Expect = 0.73
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 190 DAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSN 237
++ V+ ++A WK+ + ++ YAYD VA+ +D + ++++N
Sbjct: 318 ESSVKRQFMARWKNLRPNDGFNSYAMYAYDSVWLVARALDVFFRENNN 365
>At3g29400 unknown protein (At3g29400)
Length = 658
Score = 30.0 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 231 YNKQSSNYNSEKVL--VSFVSDGSTGLGPGNGFLDGCRMLKSQQKLNG 276
+ +Q++ Y L +SF+ D +G GPG+G G + L+ +++ G
Sbjct: 529 FQQQATEYERATWLPVLSFLKDDGSGSGPGSGSGSGSKNLRPRERFQG 576
>At3g56460 quinone reductase-like protein
Length = 348
Score = 29.6 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 103 VKVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYE 154
+ +A++ G + +Q + +D N +SS+ IKT L G+DV Y+
Sbjct: 177 IVIAVARGTEKIQLLKSMGVDHVVDLGTENVISSVKEFIKTRKLKGVDVLYD 228
>At4g19730 putative protein
Length = 332
Score = 29.3 bits (64), Expect = 2.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 96 IKNQNPNVKVALSLGGDTVQGDPVNFIPSS-------IDSWVSNAVSSLTSIIKTYNLDG 148
+K +NP VK LS+GG + S+ IDSW+ I ++ G
Sbjct: 74 VKIRNPQVKTLLSIGGKNANNSAFASMASNHQSRKTFIDSWI--------FIARSNGFHG 125
Query: 149 IDVDYEHFIGD--PNTFAECIGRL 170
+D+ +E+ D F +G L
Sbjct: 126 LDLAWEYPYSDHEMTDFGNLVGEL 149
>At4g19820 putative chitinase
Length = 366
Score = 28.9 bits (63), Expect = 3.6
Identities = 17/63 (26%), Positives = 35/63 (54%), Gaps = 7/63 (11%)
Query: 96 IKNQNPNVKVALSLGGDTVQGDPVNFIPSSIDSWVSNA---VSSLTSIIKTYNLDGIDVD 152
++ +NP VK LS+GGD NF +S+ S ++ +SS + ++ G+D++
Sbjct: 81 VRRRNPTVKTLLSIGGDFT----YNFAFASMASNPTSRKLFISSSIKLARSCGFHGLDLN 136
Query: 153 YEH 155
+++
Sbjct: 137 WKY 139
>At3g26720 alpha-mannosidase, putative
Length = 1019
Score = 28.9 bits (63), Expect = 3.6
Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 114 VQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAECIGRLITT 173
VQG + + ++SW+S +T + K N I+ D E I +L TT
Sbjct: 671 VQGPLFDEVHQELNSWISQ----ITRVYKGKNHAEIEFTIGPIPADDGISKEIITKLTTT 726
Query: 174 LKNNNVISFASIAPFDDAEVQNHY----LALWKSYSNIIDYVNFQFYAYDKSTTVAQFID 229
+K N S +++ L +++ + +N Y DK++ ++ +D
Sbjct: 727 MKTNGTFYTDSNGRDFIKRIRDFRTDWDLQVYQPVAGNYYPLNLGIYMQDKTSELSVLVD 786
Query: 230 YYNKQSSNYNSEKVLV---SFVSDGSTGLGPGNG----FLDGCRMLKSQQKLNGIFVYSA 282
SS N + L+ D G+G +GC+ L Q K Y
Sbjct: 787 RAVGGSSLENGQIELMLHRRMQHDDIRGVGEILNETVCLPEGCKGLTIQGKF-----YVQ 841
Query: 283 DDSKADGFRYEKEAQEVLASP 303
D DG ++ + + + SP
Sbjct: 842 IDKPGDGAKWRRTFGQEIYSP 862
>At3g03450 RGA1-like protein
Length = 547
Score = 28.9 bits (63), Expect = 3.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 91 SEVSFIKNQNPNVKVALSLG--GDTVQGDPVNFIPSSIDSWVSNAVSSLTS 139
SE++ + + +++ LS G TV D V++ PS + +WV + +S L +
Sbjct: 57 SEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVESMLSELNN 107
>At2g37670 putative WD-40 repeat protein
Length = 903
Score = 28.9 bits (63), Expect = 3.6
Identities = 17/58 (29%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Query: 131 SNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAECIGRLITTL---KNNNVISFASI 185
S+AVSSLT+ + + + DY+ ++ P + +E RL+ + N +++S SI
Sbjct: 66 SSAVSSLTTASRKFRTPAMSPDYDIWMAAPGSISERRRRLLHGMGLASNKDMVSAVSI 123
>At5g13960 unknown protein (At5g13960)
Length = 624
Score = 28.5 bits (62), Expect = 4.7
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Query: 37 GAQFKGV----KFSDVPINPNVNFHFILSFAIDYDTSSPPSPTNGN 78
G +FKG+ + D P++P F +I S I+ + P S T N
Sbjct: 339 GLEFKGIPATNRVDDSPVSPTSGFTYIKSLIIEPNVIIPKSSTGCN 384
>At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1
Length = 459
Score = 28.5 bits (62), Expect = 4.7
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 125 SIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFI--GDPNTFAECIGRLITTL 174
S+ S + N T + KTYNL GI VD + +PNT+A + TL
Sbjct: 171 SLSSMIVNRYKLKTDV-KTYNLSGISVDLATNLLKANPNTYAVIVSTENMTL 221
>At1g71400 disease resistance like protein
Length = 847
Score = 28.1 bits (61), Expect = 6.2
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 56 FHFILSFAIDYDTSSPPSPTN----GNFNIFWDTQNLSPSEVSFIKNQNPNVKVALSLGG 111
FH + F + Y++ S P P + + + +N + F + L LG
Sbjct: 301 FHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGR 360
Query: 112 DTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGD-PNTFAECIGRL 170
+ + G IP SI + NL+ +D+ + +F G P T ++ + L
Sbjct: 361 NRLHGP----IPESIS--------------RLLNLEELDISHNNFTGAIPPTISKLVNLL 402
Query: 171 ITTLKNNNV 179
L NN+
Sbjct: 403 HLDLSKNNL 411
>At4g23841 putative protein
Length = 364
Score = 27.7 bits (60), Expect = 8.0
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 104 KVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLT--SIIKT-YNLDGIDVDYEHFIGDP 160
K+ LS + + + ++F S +++ + +SL S ++T +NL+ +D+ F D
Sbjct: 21 KLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDS 80
Query: 161 NTFAECIGRLITTLKNNNVISFASIAPFDDAEVQNH 196
F C+G LKN NV S I P + H
Sbjct: 81 VGFVACVGE---NLKNLNV-SDTQITPSGVGNLAGH 112
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,209,774
Number of Sequences: 26719
Number of extensions: 319504
Number of successful extensions: 823
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 19
length of query: 304
length of database: 11,318,596
effective HSP length: 99
effective length of query: 205
effective length of database: 8,673,415
effective search space: 1778050075
effective search space used: 1778050075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC149490.11