Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149490.11 + phase: 0 
         (304 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g19800 chitinase - like protein                                     42  4e-04
At4g19810 putative chitinase                                           33  0.25
At4g32210 putative protein                                             32  0.33
At5g14810 putative protein                                             32  0.43
At4g19720 putative protein                                             31  0.73
At1g05200 putative glutamate receptor protein / ligand-gated ion...    31  0.73
At3g29400 unknown protein (At3g29400)                                  30  1.6
At3g56460 quinone reductase-like protein                               30  2.1
At4g19730 putative protein                                             29  2.8
At4g19820 putative chitinase                                           29  3.6
At3g26720 alpha-mannosidase, putative                                  29  3.6
At3g03450 RGA1-like protein                                            29  3.6
At2g37670 putative WD-40 repeat protein                                29  3.6
At5g13960 unknown protein (At5g13960)                                  28  4.7
At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1       28  4.7
At1g71400 disease resistance like protein                              28  6.2
At4g23841 putative protein                                             28  8.0

>At4g19800 chitinase - like protein
          Length = 398

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 40  FKGVKFSDVPINPNVNFHFILSFAIDYDTSSPPSPTNGNFNIFWDTQNLSPSEV--SFIK 97
           F    F    I+ ++  H   +FA D +  S        + I   T N +P       ++
Sbjct: 13  FPATDFPATDIDSSLFTHLFCTFA-DLEAES--------YEITIATWNQAPFHAFTETVQ 63

Query: 98  NQNPNVKVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEH 155
            +NP+VK  LS+GG     D    + S+ DS  S   S++T + ++Y   G+D+D+E+
Sbjct: 64  QRNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTIT-VARSYGFHGLDLDWEY 120


>At4g19810 putative chitinase
          Length = 379

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 17/63 (26%), Positives = 36/63 (56%), Gaps = 7/63 (11%)

Query: 96  IKNQNPNVKVALSLGG---DTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVD 152
           ++ +NP+VK  LS+GG   D      +   P+S  S++ +++     + ++Y   G+D+D
Sbjct: 83  VQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSI----RVARSYGFHGLDLD 138

Query: 153 YEH 155
           +E+
Sbjct: 139 WEY 141


>At4g32210 putative protein
          Length = 1086

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 34/176 (19%), Positives = 74/176 (41%), Gaps = 18/176 (10%)

Query: 127 DSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAE--CIGRLITTLKNNNVISFAS 184
           D  V+++++ LT + +T  ++     +E  I     FAE   +   +  L+ +  ++   
Sbjct: 181 DEHVNDSIAKLTQLQETEGIEEYHARFE-LISTRLNFAEDYLVSVYLAGLRTDTQLNVRM 239

Query: 185 IAPFDDAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSNYNSEKVL 244
             P    +     L L + Y            A+ KS  + +  D Y K++ + +S    
Sbjct: 240 FGP----QTIQQCLMLGRLYE----------MAHPKSVLIRKKSDDYQKEAQHVSSNAAG 285

Query: 245 VSFVSDGSTGLG-PGNGFLDGCRMLKSQQKLNGIFVYSADDSKADGFRYEKEAQEV 299
            S ++DG+  +G  G+ FL G  ++++       ++   DD+ +       +A +V
Sbjct: 286 TSMINDGNCMIGNDGDRFLSGSDLVENAVATVKKYLVEIDDAMSSDDDQNSDAGDV 341


>At5g14810 putative protein
          Length = 716

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 34/176 (19%), Positives = 74/176 (41%), Gaps = 18/176 (10%)

Query: 127 DSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAE--CIGRLITTLKNNNVISFAS 184
           D  V+++++ LT + +T  ++     +E  I     FAE   +   +  L+ +  ++   
Sbjct: 181 DEHVNDSIAKLTQLQETEGIEEYHARFE-LISTRLNFAEDYLVSVYLAGLRTDTQLNVRM 239

Query: 185 IAPFDDAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSNYNSEKVL 244
             P    +     L L + Y            A+ KS  + +  D Y K++ + +S    
Sbjct: 240 FGP----QTIQQCLMLGRLYE----------MAHPKSVLIRKESDDYQKEAQHVSSNAAG 285

Query: 245 VSFVSDGSTGLG-PGNGFLDGCRMLKSQQKLNGIFVYSADDSKADGFRYEKEAQEV 299
            S ++DG+  +G  G+ FL G  ++++       ++   DD+ +       +A +V
Sbjct: 286 TSMINDGNCMIGNDGDRFLSGSDLVENAVATVKKYLVEIDDAVSSDDDQNSDAGDV 341


>At4g19720 putative protein
          Length = 421

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 18/63 (28%), Positives = 35/63 (54%), Gaps = 7/63 (11%)

Query: 96  IKNQNPNVKVALSLGGDTVQGDPVNFI---PSSIDSWVSNAVSSLTSIIKTYNLDGIDVD 152
           +K +NP+V+  LS+GG          +   P+S  S++ +A+SS     + Y  DG+D+ 
Sbjct: 72  VKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISS----ARYYRFDGLDLV 127

Query: 153 YEH 155
           +++
Sbjct: 128 WKY 130


>At1g05200 putative glutamate receptor protein / ligand-gated ion
           channel protein (AtGLR3.4)
          Length = 959

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 190 DAEVQNHYLALWKSYSNIIDYVNFQFYAYDKSTTVAQFIDYYNKQSSN 237
           ++ V+  ++A WK+      + ++  YAYD    VA+ +D + ++++N
Sbjct: 318 ESSVKRQFMARWKNLRPNDGFNSYAMYAYDSVWLVARALDVFFRENNN 365


>At3g29400 unknown protein (At3g29400)
          Length = 658

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 231 YNKQSSNYNSEKVL--VSFVSDGSTGLGPGNGFLDGCRMLKSQQKLNG 276
           + +Q++ Y     L  +SF+ D  +G GPG+G   G + L+ +++  G
Sbjct: 529 FQQQATEYERATWLPVLSFLKDDGSGSGPGSGSGSGSKNLRPRERFQG 576


>At3g56460 quinone reductase-like protein
          Length = 348

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 103 VKVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYE 154
           + +A++ G + +Q      +   +D    N +SS+   IKT  L G+DV Y+
Sbjct: 177 IVIAVARGTEKIQLLKSMGVDHVVDLGTENVISSVKEFIKTRKLKGVDVLYD 228


>At4g19730 putative protein
          Length = 332

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 96  IKNQNPNVKVALSLGGDTVQGDPVNFIPSS-------IDSWVSNAVSSLTSIIKTYNLDG 148
           +K +NP VK  LS+GG          + S+       IDSW+         I ++    G
Sbjct: 74  VKIRNPQVKTLLSIGGKNANNSAFASMASNHQSRKTFIDSWI--------FIARSNGFHG 125

Query: 149 IDVDYEHFIGD--PNTFAECIGRL 170
           +D+ +E+   D     F   +G L
Sbjct: 126 LDLAWEYPYSDHEMTDFGNLVGEL 149


>At4g19820 putative chitinase
          Length = 366

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/63 (26%), Positives = 35/63 (54%), Gaps = 7/63 (11%)

Query: 96  IKNQNPNVKVALSLGGDTVQGDPVNFIPSSIDSWVSNA---VSSLTSIIKTYNLDGIDVD 152
           ++ +NP VK  LS+GGD       NF  +S+ S  ++    +SS   + ++    G+D++
Sbjct: 81  VRRRNPTVKTLLSIGGDFT----YNFAFASMASNPTSRKLFISSSIKLARSCGFHGLDLN 136

Query: 153 YEH 155
           +++
Sbjct: 137 WKY 139


>At3g26720 alpha-mannosidase, putative
          Length = 1019

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 20/201 (9%)

Query: 114 VQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAECIGRLITT 173
           VQG   + +   ++SW+S     +T + K  N   I+        D     E I +L TT
Sbjct: 671 VQGPLFDEVHQELNSWISQ----ITRVYKGKNHAEIEFTIGPIPADDGISKEIITKLTTT 726

Query: 174 LKNNNVISFASIAPFDDAEVQNHY----LALWKSYSNIIDYVNFQFYAYDKSTTVAQFID 229
           +K N      S        +++      L +++  +     +N   Y  DK++ ++  +D
Sbjct: 727 MKTNGTFYTDSNGRDFIKRIRDFRTDWDLQVYQPVAGNYYPLNLGIYMQDKTSELSVLVD 786

Query: 230 YYNKQSSNYNSEKVLV---SFVSDGSTGLGPGNG----FLDGCRMLKSQQKLNGIFVYSA 282
                SS  N +  L+       D   G+G          +GC+ L  Q K      Y  
Sbjct: 787 RAVGGSSLENGQIELMLHRRMQHDDIRGVGEILNETVCLPEGCKGLTIQGKF-----YVQ 841

Query: 283 DDSKADGFRYEKEAQEVLASP 303
            D   DG ++ +   + + SP
Sbjct: 842 IDKPGDGAKWRRTFGQEIYSP 862


>At3g03450 RGA1-like protein
          Length = 547

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 91  SEVSFIKNQNPNVKVALSLG--GDTVQGDPVNFIPSSIDSWVSNAVSSLTS 139
           SE++ +  +   +++ LS    G TV  D V++ PS + +WV + +S L +
Sbjct: 57  SEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVESMLSELNN 107


>At2g37670 putative WD-40 repeat protein
          Length = 903

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/58 (29%), Positives = 32/58 (54%), Gaps = 3/58 (5%)

Query: 131 SNAVSSLTSIIKTYNLDGIDVDYEHFIGDPNTFAECIGRLITTL---KNNNVISFASI 185
           S+AVSSLT+  + +    +  DY+ ++  P + +E   RL+  +    N +++S  SI
Sbjct: 66  SSAVSSLTTASRKFRTPAMSPDYDIWMAAPGSISERRRRLLHGMGLASNKDMVSAVSI 123


>At5g13960 unknown protein (At5g13960)
          Length = 624

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 4/46 (8%)

Query: 37  GAQFKGV----KFSDVPINPNVNFHFILSFAIDYDTSSPPSPTNGN 78
           G +FKG+    +  D P++P   F +I S  I+ +   P S T  N
Sbjct: 339 GLEFKGIPATNRVDDSPVSPTSGFTYIKSLIIEPNVIIPKSSTGCN 384


>At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1
          Length = 459

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 3/52 (5%)

Query: 125 SIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFI--GDPNTFAECIGRLITTL 174
           S+ S + N     T + KTYNL GI VD    +   +PNT+A  +     TL
Sbjct: 171 SLSSMIVNRYKLKTDV-KTYNLSGISVDLATNLLKANPNTYAVIVSTENMTL 221


>At1g71400 disease resistance like protein
          Length = 847

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 23/129 (17%)

Query: 56  FHFILSFAIDYDTSSPPSPTN----GNFNIFWDTQNLSPSEVSFIKNQNPNVKVALSLGG 111
           FH +  F + Y++ S P P +     +    +  +N     + F    +      L LG 
Sbjct: 301 FHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGR 360

Query: 112 DTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGIDVDYEHFIGD-PNTFAECIGRL 170
           + + G     IP SI               +  NL+ +D+ + +F G  P T ++ +  L
Sbjct: 361 NRLHGP----IPESIS--------------RLLNLEELDISHNNFTGAIPPTISKLVNLL 402

Query: 171 ITTLKNNNV 179
              L  NN+
Sbjct: 403 HLDLSKNNL 411


>At4g23841 putative protein
          Length = 364

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 104 KVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLT--SIIKT-YNLDGIDVDYEHFIGDP 160
           K+ LS    + + + ++F   S  +++  + +SL   S ++T +NL+ +D+    F  D 
Sbjct: 21  KLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDS 80

Query: 161 NTFAECIGRLITTLKNNNVISFASIAPFDDAEVQNH 196
             F  C+G     LKN NV S   I P     +  H
Sbjct: 81  VGFVACVGE---NLKNLNV-SDTQITPSGVGNLAGH 112


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,209,774
Number of Sequences: 26719
Number of extensions: 319504
Number of successful extensions: 823
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 19
length of query: 304
length of database: 11,318,596
effective HSP length: 99
effective length of query: 205
effective length of database: 8,673,415
effective search space: 1778050075
effective search space used: 1778050075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)


Medicago: description of AC149490.11