BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149205.14 - phase: 0 /pseudo
(890 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01840 putative non-LTR retroelement reverse transcriptase 107 2e-23
At1g24640 hypothetical protein 105 1e-22
At2g17910 putative non-LTR retroelement reverse transcriptase 104 2e-22
At2g16680 putative non-LTR retroelement reverse transcriptase 104 3e-22
At2g15540 putative non-LTR retroelement reverse transcriptase 103 3e-22
At3g45550 putative protein 102 7e-22
At2g31520 putative non-LTR retroelement reverse transcriptase 102 7e-22
At2g25550 putative non-LTR retroelement reverse transcriptase 102 7e-22
At4g10830 putative protein 102 1e-21
At2g05200 putative non-LTR retroelement reverse transcriptase 102 1e-21
At1g47910 reverse transcriptase, putative 100 3e-21
At3g31420 hypothetical protein 100 5e-21
At4g09710 RNA-directed DNA polymerase -like protein 100 6e-21
At2g41580 putative non-LTR retroelement reverse transcriptase 99 1e-20
At2g17610 putative non-LTR retroelement reverse transcriptase 94 4e-19
At2g11240 pseudogene 92 1e-18
At2g45230 putative non-LTR retroelement reverse transcriptase 92 2e-18
At2g31080 putative non-LTR retroelement reverse transcriptase 78 3e-14
At2g15380 putative non-LTR retroelement reverse transcriptase 77 3e-14
At3g32110 non-LTR reverse transcriptase, putative 77 6e-14
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 107 bits (268), Expect = 2e-23
Identities = 45/106 (42%), Positives = 74/106 (69%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P ++I +N +VA E++H +K++ Q YVA+K DISKAYDR++W++L+++MI++GF+ +
Sbjct: 904 PGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPR 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++W++ SV Y VL+N G + RG+RQG PLS + C
Sbjct: 964 WVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFC 1009
>At1g24640 hypothetical protein
Length = 1270
Score = 105 bits (261), Expect = 1e-22
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N +VA E++H +K R +++A+K D+SKAYDR++W YL+ +++ +GF KW
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++V SV Y+VL+N G +IL RGLRQG PLS + LC L
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 104 bits (260), Expect = 2e-22
Identities = 48/110 (43%), Positives = 74/110 (66%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N +VA E+IH ++T R +++A K D+SKAYDR++W +L+ +M +GF+ K
Sbjct: 520 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 579
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
WI W++ SV Y+VL+N + G +I RG+RQG PLS + + LC +L
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 629
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 104 bits (259), Expect = 3e-22
Identities = 43/109 (39%), Positives = 74/109 (67%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E++H ++T + +++ K D+SKAYDR++W +L+EI++ +GF+ KW
Sbjct: 495 ERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKW 554
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I W++ SV Y+VL+N +H G + RG+RQG P+S + LC +L
Sbjct: 555 ISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEAL 603
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 103 bits (258), Expect = 3e-22
Identities = 45/109 (41%), Positives = 72/109 (65%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E H ++T + KY+A+K D+SKAYDR++W +L+ +M+KMGF+QKW
Sbjct: 490 ERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKW 549
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++ SV Y +L+N G + RG+RQG P+S + LC +L
Sbjct: 550 VDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEAL 598
>At3g45550 putative protein
Length = 851
Score = 102 bits (255), Expect = 7e-22
Identities = 51/123 (41%), Positives = 75/123 (60%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A E++H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 163 PGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDK 222
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC L + +S
Sbjct: 223 WIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASS 282
Query: 155 GHI 157
G I
Sbjct: 283 GDI 285
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 102 bits (255), Expect = 7e-22
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 698 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 757
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 803
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 102 bits (255), Expect = 7e-22
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 924 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 983
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 1029
>At4g10830 putative protein
Length = 1294
Score = 102 bits (254), Expect = 1e-21
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R + +N M+A E++H +KT+ R Y+A+K D+SKAYDR++W++L+ M GFS+
Sbjct: 904 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+W++ + +SV+Y+VLVN G + RG+RQG PLS + LC
Sbjct: 964 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILC 1009
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 102 bits (254), Expect = 1e-21
Identities = 50/119 (42%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N ++ EV+HF++T + + +A+K D+SKAYDR++WD+LK+++ + GF
Sbjct: 437 PGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSI 496
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRA 153
WI W++ SV Y+ L+N G V+ RGLRQG PLS + LC L CTRA
Sbjct: 497 WIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGL--CTRA 553
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 100 bits (250), Expect = 3e-21
Identities = 44/104 (42%), Positives = 73/104 (69%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E+ H ++T + +DK++A+K D+SKAYD+++W++++ ++ KMGF +KWI
Sbjct: 328 RLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWI 387
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++ +V Y VL+N + G +I RGLRQG PLS + LC
Sbjct: 388 SWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILC 431
>At3g31420 hypothetical protein
Length = 1491
Score = 100 bits (248), Expect = 5e-21
Identities = 47/106 (44%), Positives = 71/106 (66%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I NNA++A EV + +K + R + Y+ALK DI+KAYDR++WD+L+E M +MGF+ K
Sbjct: 727 PGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTK 786
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+ +++ V ++VL+N G + RG+R G PLS + LC
Sbjct: 787 WIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILC 832
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 99.8 bits (247), Expect = 6e-21
Identities = 45/108 (41%), Positives = 73/108 (66%), Gaps = 4/108 (3%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKY--VALKLDISKAYDRMDWDYLKEIMIKMGFS 92
P R+I +N ++ E++HF++ G KY +A+K D+SKAYDR+ W++L+E+++++GF
Sbjct: 483 PGRAIADNVLITHEILHFLRVS--GAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFH 540
Query: 93 QKWIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
KWI+W++ +V Y+ L+N G V+ RGLRQG PLS + LC
Sbjct: 541 DKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILC 588
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 98.6 bits (244), Expect = 1e-20
Identities = 43/109 (39%), Positives = 70/109 (63%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R + +N ++A E++H ++T + ++ K D+SKAYDR++W +LK I++ +GF+ W
Sbjct: 272 ERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTW 331
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I WM+ SV Y+VL+N + G + RGLRQG PLS + LC +L
Sbjct: 332 INWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 93.6 bits (231), Expect = 4e-19
Identities = 44/106 (41%), Positives = 70/106 (65%), Gaps = 1/106 (0%)
Query: 39 ILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWIQW 98
I +N ++A E+IH + TK Q +VA KLDI+KA+D+++W +++ IM +MGFS+KW W
Sbjct: 2 ITDNILIAHELIHSLHTKKLVQP-FVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 99 MVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
++ + Y++L+N + V +I RG+RQG P+S Y LC L
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGL 106
>At2g11240 pseudogene
Length = 1044
Score = 92.0 bits (227), Expect = 1e-18
Identities = 44/123 (35%), Positives = 73/123 (58%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R+ +N ++ E +H++K+ + ++A+K ++SKAYDR++WD++K +M +MGF Q
Sbjct: 368 PKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQT 427
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
WI W++ +V Y+ L+N G V RGLRQG PLS + +C L R +
Sbjct: 428 WISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLD 487
Query: 155 GHI 157
G +
Sbjct: 488 GSL 490
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 91.7 bits (226), Expect = 2e-18
Identities = 41/104 (39%), Positives = 69/104 (65%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E++H + + + ++++A+K DISKAYDR++W +L++ M +GF+ WI
Sbjct: 544 RLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWI 603
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
+ ++ +SV Y VL+N G +I RGLRQG PLS + +C
Sbjct: 604 RLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVIC 647
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 77.8 bits (190), Expect = 3e-14
Identities = 39/106 (36%), Positives = 60/106 (55%), Gaps = 1/106 (0%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R ++N ++ E +H M+ K +G+ ++ LKLD+ KAYDR+ WD+L+E + G S+
Sbjct: 406 PGRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEG 464
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W ++ +VL N E + RGLRQG PLS + LC
Sbjct: 465 WTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLC 510
>At2g15380 putative non-LTR retroelement reverse transcriptase
Length = 1311
Score = 77.4 bits (189), Expect = 3e-14
Identities = 31/89 (34%), Positives = 58/89 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R+I +N ++ E +H++KT + ++A+K D+SKAYDR++W++++ + +MGF +
Sbjct: 766 PQRAISDNVLITHEALHYLKTSGAQKRCFMAVKTDMSKAYDRLEWNFIETALSRMGFHTQ 825
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILG 123
WI W++ +V Y+ L N + G V+ G
Sbjct: 826 WISWIMQCVCTVSYSFLFNGQAKGEVLSG 854
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 76.6 bits (187), Expect = 6e-14
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R +N +V EV+H M+ K +G ++ LKLD+ KAYDR+ WD L++ + G
Sbjct: 1082 PGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGT 1140
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W+QW++ E +L N E RGLRQG PLS + LC
Sbjct: 1141 WVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLC 1186
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.368 0.164 0.641
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,150,544
Number of Sequences: 26719
Number of extensions: 570876
Number of successful extensions: 2504
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 64
length of query: 890
length of database: 11,318,596
effective HSP length: 108
effective length of query: 782
effective length of database: 8,432,944
effective search space: 6594562208
effective search space used: 6594562208
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC149205.14