BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.4 - phase: 0
(204 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21420 hypothetical protein 74 7e-14
At3g32110 non-LTR reverse transcriptase, putative 69 1e-12
At2g31080 putative non-LTR retroelement reverse transcriptase 60 1e-09
At2g27870 putative non-LTR retroelement reverse transcriptase 58 4e-09
At2g22350 putative non-LTR retroelement reverse transcriptase 57 5e-09
At2g07730 putative non-LTR retroelement reverse transcriptase 57 7e-09
At5g33360 putative protein 56 1e-08
At1g17390 hypothetical protein 53 1e-07
At4g08830 putative protein 51 5e-07
At2g45230 putative non-LTR retroelement reverse transcriptase 49 1e-06
At1g47320 hypothetical protein 49 2e-06
At4g15580 splicing factor like protein 48 4e-06
At4g29090 putative protein 44 6e-05
At1g26950 hypothetical protein 43 1e-04
At1g04630 unknown protein 42 2e-04
At3g25270 hypothetical protein 39 0.001
At2g04420 putative non-LTR retrolelement reverse transcriptase 39 0.002
At2g02650 putative reverse transcriptase 39 0.002
At5g51080 unknown protein 38 0.003
At2g46460 hypothetical protein 38 0.004
>At4g21420 hypothetical protein
Length = 229
Score = 73.6 bits (179), Expect = 7e-14
Identities = 42/136 (30%), Positives = 70/136 (50%), Gaps = 3/136 (2%)
Query: 37 EVLWSPPIHSWIKGNCVGAFA-SGKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+V+W P + IK N G+ G+A+ GG+FRN +FL ++E + S AE
Sbjct: 60 KVVWKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAAL 119
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRW-NNCQIIISNM-NFLASH 153
R +E A + WLE D+ +++ + + N+ N ++++ + N + SH
Sbjct: 120 KRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVLSH 179
Query: 154 IYREGNSCADVLANIG 169
+YREGN AD LA +G
Sbjct: 180 VYREGNRVADKLAKLG 195
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 69.3 bits (168), Expect = 1e-12
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 36 KEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELC 93
K + W+PP+ W K N GA G A+ GG+ RN G + G FA + ++ AEL
Sbjct: 1739 KPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELW 1798
Query: 94 GAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLAS 152
G + A +K + LE DS +VV K + C +S + S
Sbjct: 1799 GVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRIS 1858
Query: 153 HIYREGNSCADVLAN--IGLTLDTYVY 177
H+YRE NS AD LAN L+L +V+
Sbjct: 1859 HVYREANSLADGLANHAFSLSLGLHVF 1885
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 59.7 bits (143), Expect = 1e-09
Identities = 47/147 (31%), Positives = 62/147 (41%), Gaps = 4/147 (2%)
Query: 30 PRSMLVKEVL-WSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGN 86
P + V+ ++ W P W+K GA G AA GG RN G++LG FA +
Sbjct: 1052 PNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCA 1111
Query: 87 SLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQ-IIIS 145
+ AEL GA + A K + L+ D LVV + CQ
Sbjct: 1112 APLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTR 1171
Query: 146 NMNFLASHIYREGNSCADVLANIGLTL 172
+ SH+YRE N AD LAN TL
Sbjct: 1172 DWLVRVSHVYREANRLADGLANYAFTL 1198
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 57.8 bits (138), Expect = 4e-09
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 38 VLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ WS P W K N GA G A+ GG+ R+ G + G FA + ++ AEL G
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHI 154
+ A + +E DS +VV K + C IS + SH+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHV 263
Query: 155 YREGNSCADVLANIGLTLDTYVYYYSLPLQVRS 187
YRE N AD LAN Y +SLPL S
Sbjct: 264 YREANRLADGLAN---------YAFSLPLGFHS 287
>At2g22350 putative non-LTR retroelement reverse transcriptase
Length = 321
Score = 57.4 bits (137), Expect = 5e-09
Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 16 EFTILKAFNVSIHPPRSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQ 73
E I AF S + + V W P W+K N GA G A GG+ R+ G
Sbjct: 129 EVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGA 188
Query: 74 FLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQV 133
++G FA + ++ AEL G + A + LE DS +VV +
Sbjct: 189 WIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPL 248
Query: 134 RNRWNNCQIIISNMNFL-ASHIYREGNSCADVLANIGLTLDTYVYYYSLPLQVRSDYVKN 192
C +S + SH+YRE N AD LAN +L ++ L+ R D V +
Sbjct: 249 SFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHL----LESRPDVVSS 304
Query: 193 RL 194
L
Sbjct: 305 IL 306
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 57.0 bits (136), Expect = 7e-09
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 28 HPPRSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYG 85
H R+ + + + W P W+K GA G AA G N G++LG FA +
Sbjct: 790 HVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSC 849
Query: 86 NSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQ-III 144
++ AEL GA + A K + L DS LVV + CQ
Sbjct: 850 DAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFT 909
Query: 145 SNMNFLASHIYREGNSCADVLANIGLTL 172
+ SH+YRE N AD LAN L
Sbjct: 910 RDWLVRVSHVYREANRLADGLANYAFFL 937
>At5g33360 putative protein
Length = 306
Score = 56.2 bits (134), Expect = 1e-08
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 3/155 (1%)
Query: 31 RSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSL 88
RS + ++V WS P W K N GA G A GG RN G++ FA + ++
Sbjct: 129 RSRMERQVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAP 188
Query: 89 FAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NM 147
AEL G + A + LE DS +VV + + C +S +
Sbjct: 189 LAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDW 248
Query: 148 NFLASHIYREGNSCADVLANIGLTLDTYVYYYSLP 182
H+YRE N AD LAN L + ++ P
Sbjct: 249 IVRIGHVYREANRLADELANYAFDLPLGYHGFASP 283
>At1g17390 hypothetical protein
Length = 322
Score = 52.8 bits (125), Expect = 1e-07
Identities = 40/138 (28%), Positives = 59/138 (41%), Gaps = 3/138 (2%)
Query: 38 VLWSPPIHSWIKGNCVGAFASGK--AACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ WSPP W K N GA A GG+ R+ G + F+ + ++ AEL GA
Sbjct: 102 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 161
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHI 154
+ A + +E DS +VV + + C ++S + + SH+
Sbjct: 162 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 221
Query: 155 YREGNSCADVLANIGLTL 172
YRE N AD LAN L
Sbjct: 222 YREANRLADGLANYAFFL 239
>At4g08830 putative protein
Length = 947
Score = 50.8 bits (120), Expect = 5e-07
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 31 RSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSL 88
R+ + + V W PP W+K N GA G A GG+ R+ +G + G FA + ++
Sbjct: 832 RTRVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAP 891
Query: 89 FAELCGAMRSIEFAQSKSWNNFWLETDSMLVV 120
AEL G + A + + LE DS LVV
Sbjct: 892 LAELWGVYYGLYMAWERRFTRVELEVDSELVV 923
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 49.3 bits (116), Expect = 1e-06
Identities = 41/159 (25%), Positives = 69/159 (42%), Gaps = 8/159 (5%)
Query: 38 VLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
V W PP H W+K N GA++ G G + RN G+ L L S+ A
Sbjct: 1213 VKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEA 1272
Query: 96 MRSIEFAQSK-SWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIISNMNFLA-SH 153
+R + S+ ++ E+DS +V +N +P + R + + ++ + +
Sbjct: 1273 LRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIP-SLAPRIQDIRNLLRHFEEVKFQF 1331
Query: 154 IYREGNSCADVLANIGLTLDTYVYYYSLPLQVRSDYVKN 192
REGN+ AD A L+L + Y + D++KN
Sbjct: 1332 TRREGNNVADRTARESLSL---MNYDPKMYSITPDWIKN 1367
>At1g47320 hypothetical protein
Length = 259
Score = 48.5 bits (114), Expect = 2e-06
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 59 GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSML 118
G A GG+ ++ G++ G F+ + ++ AEL GA + A + ++ LE DS +
Sbjct: 114 GLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWERKSSHIELEVDSEI 173
Query: 119 VVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHIYREGNSCADVLANIGLTLDTYVY 177
VV K + C IS + H+YRE N AD LAN Y
Sbjct: 174 VVGFLKTGISDHHPLSFLVRLCHGFISKDWRVRIFHVYREANRFADGLAN---------Y 224
Query: 178 YYSLPL 183
+SLPL
Sbjct: 225 VFSLPL 230
>At4g15580 splicing factor like protein
Length = 559
Score = 47.8 bits (112), Expect = 4e-06
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 19/159 (11%)
Query: 19 ILKAFNVSIHPPRSM--LVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQF 74
+ KA N+ +S+ + + + W+ P W+K + GA G AA GG+ R+ G +
Sbjct: 5 VTKAHNLVAGGSQSVARVERHIAWTKPPEGWVKVSTDGASRGNPGPAAAGGVIRDEDGLW 64
Query: 75 LGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVR 134
+G FA L++ + G + LE DS LVV ++ +
Sbjct: 65 VGGFALQLAFVRLRWQSCGGRVE--------------LEVDSELVVGFLQSGISEAHPLA 110
Query: 135 NRWNNCQIIISNMNFL-ASHIYREGNSCADVLANIGLTL 172
C ++S + SH+YRE N AD LAN +L
Sbjct: 111 FLVRLCHGLLSKDWLVRVSHVYREANRLADGLANYAFSL 149
>At4g29090 putative protein
Length = 575
Score = 43.9 bits (102), Expect = 6e-05
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 40 WSPPIHSWIKGNCVGAFASGKAAC--GGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMR 97
W PP H W+K N + C G + RN G+ A L S+ AMR
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 98 SIEFAQSK-SWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIISNMNFLA-SHIY 155
+ S+ +N E+DS ++++ N I P ++ + Q ++S + I
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWP-SLKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 156 REGNSCADVLANIGLTLDTY 175
REGN+ A+ +A L+ Y
Sbjct: 539 REGNTLAERVARESLSFLNY 558
>At1g26950 hypothetical protein
Length = 158
Score = 42.7 bits (99), Expect = 1e-04
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 65 GIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLV----V 120
G R+ G + G FA L + AEL G + A K LE DS LV
Sbjct: 17 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITRLELEVDSKLVAGFLT 76
Query: 121 QAFKNSAIVPWQVRNRWNNCQIIISNMNFL--ASHIYREGNSCADVLANIGLTL 172
++S ++ + VR + S+ +++ SH+YRE N AD LAN +L
Sbjct: 77 TGIEDSHLLSFLVRLCYG-----FSSKDWIVRVSHVYREANRFADELANYAFSL 125
>At1g04630 unknown protein
Length = 356
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 39 LWSPPIHSWIKGNCVGAF-ASGKAACGGIFRNRLGQFLG-CFAEGLSYGNSLFAELCGAM 96
LW+ P W K N G + ++ + G + R+ G FLG A G N + +EL +
Sbjct: 194 LWTTPPIGWTKCNYDGTYHSNAPSKAGWLLRDDRGTFLGAAHAIGSITTNPMESELQALV 253
Query: 97 RSIEFAQSKSWNNFWLETD----SMLVVQAFKNSAIVPW-----QVRNRWNNCQIIISNM 147
+++ S+ + + E D S +V N A+ W R+++ C+ +
Sbjct: 254 MAMQHCWSRGYRKIYFEGDNKEVSEIVNGRSSNFAVFNWIRDISAWRSKFEECKFTWTR- 312
Query: 148 NFLASHIYREGNSCADVLANIGLTLDTYVYYYSLPLQVRSDYV 190
R N AD LA L L+T Y Y+ V +D++
Sbjct: 313 --------RFSNMAADALAKQQLPLNTQFYCYNYIPFVITDFL 347
>At3g25270 hypothetical protein
Length = 343
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/137 (24%), Positives = 61/137 (43%), Gaps = 9/137 (6%)
Query: 1 MSAHNSKLSASSSITEF----TILKAFNVSIHPPRSM--LVKEVLWSPPIHSWIKGNCVG 54
+S N+ A + + E+ T +++ N +H R + W P +WIK N G
Sbjct: 141 ISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDG 200
Query: 55 AF--ASGKAACGGIFRNRLGQFLGC-FAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFW 111
AF + A G + R+ G ++G A G + +SL +E + +++ A S+ +
Sbjct: 201 AFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVI 260
Query: 112 LETDSMLVVQAFKNSAI 128
E DS V + N +
Sbjct: 261 FEGDSKQVEELMNNEKL 277
>At2g04420 putative non-LTR retrolelement reverse transcriptase
Length = 221
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/151 (25%), Positives = 65/151 (42%), Gaps = 12/151 (7%)
Query: 40 WSPPIHSWIKGNCVGAF--ASGKAACGGIFRNRLGQFLGCF-AEGLSYGNSLFAELCGAM 96
W P WIK N G+F + + G + R+ G + G A G + N+L +EL +
Sbjct: 63 WEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQALV 122
Query: 97 RSIEFAQSKSWNNFWLETDSMLVVQAFKNSAI----VPWQVRNRWNNCQIIISNMNFLAS 152
+++ S+ + E DS V + + W +R W+ + + S
Sbjct: 123 MAMQHTWSQGYRKVIFEGDSKQVEELLNRKQMHFGAFNW-IREAWSWSKRF---EEVIFS 178
Query: 153 HIYREGNSCADVLANIGLTLDT-YVYYYSLP 182
R N AD+LA L DT ++Y+Y +P
Sbjct: 179 WTPRTNNQPADMLAKSHLPQDTSFIYHYFVP 209
>At2g02650 putative reverse transcriptase
Length = 365
Score = 38.5 bits (88), Expect = 0.002
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 15/168 (8%)
Query: 24 NVSIHPPRSMLVKEVLWSPPIHSWIKGNCVGAFASGK--AACGGIFRNRLGQFLGCFAEG 81
+V+ +P ++ W+PP W+K N + G G R G + C
Sbjct: 190 HVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAK 249
Query: 82 LSYGN-SLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNS------AIVPWQVR 134
L SL AE G + +++ + W E+DS +V N + + +R
Sbjct: 250 LQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNGEDHSLLGTLIYDIR 309
Query: 135 NRWNNCQIIISNMNFLASHIYREGNSCADVLANIGLTLDTYVYYYSLP 182
+ W ++ ++ F + RE NS AD LA+ D Y+ P
Sbjct: 310 H-W-MLKLPYCSLEF----VNRERNSAADALASHVHARDPLFQSYTTP 351
>At5g51080 unknown protein
Length = 322
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/152 (23%), Positives = 61/152 (39%), Gaps = 8/152 (5%)
Query: 29 PPRSMLVKEVLWSPPIHSWIKGNCVGAFAS------GKAACGGIFRNRLGQFLGCFAEGL 82
P SM V+++ P C+ F G + + + G + +GL
Sbjct: 163 PSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGL 222
Query: 83 SYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNN--C 140
+ AE G + ++ A K + ++TDS LV K V +V ++ +
Sbjct: 223 GIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAK 282
Query: 141 QIIISNMNFLASHIYREGNSCADVLANIGLTL 172
Q+ ++F SH+ R NS AD AN+ L
Sbjct: 283 QLSDKCLSFEISHVLRSLNSDADEQANMAARL 314
>At2g46460 hypothetical protein
Length = 160
Score = 37.7 bits (86), Expect = 0.004
Identities = 38/160 (23%), Positives = 65/160 (39%), Gaps = 21/160 (13%)
Query: 40 WSPPIHSWIKGNCVGAF-ASGKAACGGIFRNRLGQFLGC-FAEGLSYGNSLFAELCGAMR 97
W+ P H W K N G++ + G I R+ GQF+ A G N+L +E +
Sbjct: 3 WTRPPHGWKKCNYDGSYNREMPSKAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLI 62
Query: 98 SIEFAQSKSWNNFWLETDSMLVVQAFKNSA----IVPW-----QVRNRWNNCQIIISNMN 148
+++ S W E D+ V++ I W + R+ C+
Sbjct: 63 TMQSCWSHGHRKIWFEGDNREVMEILNRRKSRFDIFNWIRDVQAWKQRFQECRF------ 116
Query: 149 FLASHIYREGNSCADVLANIGLTL-DTYVYYYSLPLQVRS 187
+ I R+ N AD+LA L + + +Y +P+ + S
Sbjct: 117 ---TWINRKQNKPADILAKSHLPQNEQFKFYDYIPIVISS 153
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,573,807
Number of Sequences: 26719
Number of extensions: 176530
Number of successful extensions: 464
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 46
length of query: 204
length of database: 11,318,596
effective HSP length: 95
effective length of query: 109
effective length of database: 8,780,291
effective search space: 957051719
effective search space used: 957051719
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149197.4