BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149134.1 - phase: 0 
         (555 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g47850 hypothetical protein                                        322  4e-88
At2g28980 putative non-LTR retroelement reverse transcriptase         299  3e-81
At3g44650 putative protein                                            296  3e-80
At2g05200 putative non-LTR retroelement reverse transcriptase         295  6e-80
At3g45550 putative protein                                            293  2e-79
At4g10830 putative protein                                            292  3e-79
At2g05980 putative non-LTR retroelement reverse transcriptase         292  3e-79
At2g23880 putative non-LTR retroelement reverse transcriptase         291  6e-79
At4g02490                                                             288  7e-78
At1g25430 hypothetical protein                                        286  2e-77
At3g25485 unknown protein                                             284  1e-76
At2g31080 putative non-LTR retroelement reverse transcriptase         282  4e-76
At4g09710 RNA-directed DNA polymerase -like protein                   281  9e-76
At2g25550 putative non-LTR retroelement reverse transcriptase         281  9e-76
At2g11240 pseudogene                                                  281  9e-76
At2g31520 putative non-LTR retroelement reverse transcriptase         280  2e-75
At2g14430 putative non-LTR retroelement reverse transcriptase         280  2e-75
At1g31030 F17F8.5                                                     280  2e-75
At3g32110 non-LTR reverse transcriptase, putative                     278  4e-75
At2g17910 putative non-LTR retroelement reverse transcriptase         270  2e-72

>At1g47850 hypothetical protein
          Length = 799

 Score =  322 bits (824), Expect = 4e-88
 Identities = 180/520 (34%), Positives = 276/520 (52%), Gaps = 6/520 (1%)

Query: 33  ATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKN 92
           AT   +LT   T EE +  +F + S+  PGPD + + FF+  W+I  +D   A+  FF  
Sbjct: 16  ATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIK 75

Query: 93  GWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQ 152
           G+LP   NA  + LIPK   A  +  YR I+  N  +K+I+K++A+RL  +LP+ I + Q
Sbjct: 76  GFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQ 135

Query: 153 RGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFN 212
             FV+ R + + + L +E +      S     A+KID++KAFD++ W FLL  L+   F 
Sbjct: 136 SAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFP 195

Query: 213 ELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILA 272
           E FC+WIK  + ++   + +NG   GFF   RG+RQG  LSP LF I   VLS  I + A
Sbjct: 196 ENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAA 255

Query: 273 DKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKS 332
               I      +   L   CF  DDLMVF   +  S+  + ++F  +A  SG  +++ KS
Sbjct: 256 VHRNIGYHPKCKKLSLTHLCF-ADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKS 314

Query: 333 FIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWK 392
            ++  G+++   NNI++   F  G LP  YLG P+   +     + P+ DKV++K++ W 
Sbjct: 315 TLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWT 374

Query: 393 ASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVA 452
           A  LS AGR+ L+ SV+ S+    MS Y  P   +KE+EK    F+WSG     K   + 
Sbjct: 375 ARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKIT 434

Query: 453 WRKICADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHI 511
           W  +C   +EGGLG+KSL+  N+ + LK+ W L+ +    W N + + +IR     + + 
Sbjct: 435 WTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAND 494

Query: 512 SSSI----WSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
            SS+    W  +     V K  C   +  G   +FW D+W
Sbjct: 495 RSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNW 534


>At2g28980 putative non-LTR retroelement reverse transcriptase
          Length = 1529

 Score =  299 bits (765), Expect = 3e-81
 Identities = 176/519 (33%), Positives = 268/519 (50%), Gaps = 6/519 (1%)

Query: 34   TTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNG 93
            T   +LT   T EE++  +F + ++ +PGPD + + FF+  W++   D   A+  FF  G
Sbjct: 741  TDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKG 800

Query: 94   WLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQR 153
            +LP   NA  + LIPK   A  +  YR I+  N  +K+I+K+LA+RL  +LPS I + Q 
Sbjct: 801  FLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQS 860

Query: 154  GFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNE 213
             FV+ R + + + L +E +     +S     A+KID++KAFD++ W FLL  L+   F E
Sbjct: 861  AFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPE 920

Query: 214  LFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILAD 273
             F +WIK  + ++   + +NG   GFF  +RG+RQG  LSP LF I   VLS  I   A 
Sbjct: 921  TFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAV 980

Query: 274  KGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSF 333
               I          L   CF  DDLMVF      S+  + ++F  +A  SG  +++ KS 
Sbjct: 981  HRNIGYHPKCEKIGLTHLCF-ADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKST 1039

Query: 334  IFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKA 393
            I+  G++ +     ++   F  G LP  YLG P+   +     + P+ + VK K++ W A
Sbjct: 1040 IYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTA 1099

Query: 394  SLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAW 453
              LS AGR+ L+ SV+ S+    MS Y  P   ++E+EK    F+WSG V   K   +AW
Sbjct: 1100 RSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAW 1159

Query: 454  RKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSRVIRDHRCMNHHIS 512
              IC   +EGGLG+KSL   N+ + LK+ W L+ +    W   I + +IR     + +  
Sbjct: 1160 SSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANER 1219

Query: 513  SSI----WSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
            SS+    W  +     + K      V +G   +FW D W
Sbjct: 1220 SSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHW 1258


>At3g44650 putative protein
          Length = 762

 Score =  296 bits (757), Expect = 3e-80
 Identities = 158/515 (30%), Positives = 268/515 (51%), Gaps = 6/515 (1%)

Query: 38  LLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPN 97
           +LT + + EE+K  +F + +D +PGPD F + FF+  W I+  +   A+  FF  G+LP 
Sbjct: 1   MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60

Query: 98  NFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQ 157
             N+  + LIPK   +  +  YR I+  N  +K+I+K+LA+RL  +LP  I+  Q  FV+
Sbjct: 61  GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120

Query: 158 GRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCN 217
            R + + + L ++ +      S     A+KID++KA D++ W FL+  L    F E+F +
Sbjct: 121 DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIH 180

Query: 218 WIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLI 277
           WI+  + +    + +NG   GFF  +RG+RQG  LSP LF I  +VLS+ +  +   G I
Sbjct: 181 WIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRI 240

Query: 278 DLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAG 337
                 +   L  H  + DDLM+    +  S+  +  +F  ++  SG  +++ KS IF+ 
Sbjct: 241 GYHPHCKRMGLT-HLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSA 299

Query: 338 GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLS 397
           G++ T    +     F VG LP  YLG P+   +   + + P+ ++++ ++  W +  LS
Sbjct: 300 GLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLS 359

Query: 398 IAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKIC 457
            AGR  L+ S++ S     +S +  P   ++E+EK   +F+WSG     K   ++W ++C
Sbjct: 360 FAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVC 419

Query: 458 ADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCM----NHHIS 512
               EGGLG++SL   N+   LK+ W ++   D  W   +   +++         N ++ 
Sbjct: 420 KPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLG 479

Query: 513 SSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
           S IW  +     V K  C   VG+G+  +FW D W
Sbjct: 480 SWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDW 514


>At2g05200 putative non-LTR retroelement reverse transcriptase
          Length = 1229

 Score =  295 bits (754), Expect = 6e-80
 Identities = 179/543 (32%), Positives = 273/543 (49%), Gaps = 21/543 (3%)

Query: 19  DHLLVEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIV 78
           D  +V+EAI  +V    N  LT +P  EEVK+AVF +N+  APGPD F A F+  YW+I+
Sbjct: 299 DFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHII 358

Query: 79  KKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLAD 138
             DV   +  FF +   P   N   I LIPK      V  YR IAL N  +KI+ K++  
Sbjct: 359 STDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTK 418

Query: 139 RLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGG--NLALKIDVTKAFDT 196
           R+  ILP +IS+ Q  FV GR I D + +T E ++ L   S     ++A+K D++KA+D 
Sbjct: 419 RMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDR 478

Query: 197 LNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLL 256
           + WDFL  VL+ FGF+ ++ +W+   + S      +NG   G     RG+RQGDPLSP L
Sbjct: 479 VEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCL 538

Query: 257 FCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLF 316
           F +  EVLS   +       +  +  S N     H  + DD M F K+   S   L  + 
Sbjct: 539 FILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEIL 598

Query: 317 TRYADCSGQIMNIRKSFI-FAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGI 375
           +RY   SGQ +N  KS + F+     +    +  IL          YLG P   G+ K  
Sbjct: 599 SRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRD 658

Query: 376 HFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIK 435
            F  I DK++ K   W +  LS AG+  ++K+V+ SM +++MS +  P  + ++++  + 
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718

Query: 436 NFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANI 495
            F W      RK   VAW K+      GGLG + +   N++   K+ W L+ S E     
Sbjct: 719 RFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPES---- 774

Query: 496 IRSRVIRDHRCMNHHISSSI-----------WSGVKAEFHVIKDNCSWIVGDGKQINFWS 544
           + SR++    C   H SS +           W  + A   ++K+   W++ +G++++ W+
Sbjct: 775 LLSRILLGKYC---HSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWN 831

Query: 545 DSW 547
           D W
Sbjct: 832 DPW 834


>At3g45550 putative protein
          Length = 851

 Score =  293 bits (750), Expect = 2e-79
 Identities = 178/532 (33%), Positives = 279/532 (51%), Gaps = 19/532 (3%)

Query: 28  PKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVL 87
           P  V    N  LT      E+  A+  +  D APGPD   A F++  W+IV  DV + V 
Sbjct: 34  PSSVTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVK 93

Query: 88  DFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSI 147
            FF++  +  + N  +I +IPK  N  ++  YR IAL N  +K+I+K + +RL   L SI
Sbjct: 94  LFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSI 153

Query: 148 ISKEQRGFVQGRNIRDCIALTSEAINVLD-----NKSFGGNLALKIDVTKAFDTLNWDFL 202
           +S  Q  F+ GR I D + +  E ++ L      +K++   +A+K DV+KA+D + WDFL
Sbjct: 154 VSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTY---MAVKTDVSKAYDRVEWDFL 210

Query: 203 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEE 262
              ++ FGF + +  WI   + S    + +NG+ HG+ +  RG+RQGDPLSP LF +  +
Sbjct: 211 ETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGD 270

Query: 263 VLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADC 322
           +LS  I + A  G I  +          H  + DD + FC+A + +   LK +F  Y   
Sbjct: 271 ILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYY 330

Query: 323 SGQIMNIRKSFIFAG----GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQ 378
           SGQ +N++KS I  G    G T TR+  ++NI     G     YLG P   G+ K   F 
Sbjct: 331 SGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGG---KYLGLPEQFGRKKKEMFN 387

Query: 379 PIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 438
            I D+VK + A W A  LS AG+  L+KSV  +M V+ MS +  P  I+ E+E  + NF 
Sbjct: 388 YIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFW 447

Query: 439 WSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIR 497
           W     KR +  VAW+++    +EGGLG + L   N+A   K  W ++Q  +  +A +++
Sbjct: 448 WEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMK 507

Query: 498 SRVIRDHRCMNHHISSSI---WSGVKAEFHVIKDNCSWIVGDGKQINFWSDS 546
           +R  +D+  ++    S     WS + +   +++    +++GDGK I    D+
Sbjct: 508 ARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN 559


>At4g10830 putative protein
          Length = 1294

 Score =  292 bits (748), Expect = 3e-79
 Identities = 171/503 (33%), Positives = 269/503 (52%), Gaps = 11/503 (2%)

Query: 47   EVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIIL 106
            E+ NA+  +  D APGPD   A F++  W IV  DV + V  FF+  ++  + N  +I +
Sbjct: 794  EIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICM 853

Query: 107  IPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIA 166
            IPK  N +++  YR IAL N  +KII+K L +RL   L +I+S  Q  F+ GR + D + 
Sbjct: 854  IPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVM 913

Query: 167  LTSEAINVLDNKSFGGN--LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILH 224
            +  E ++ L  +       +A+K DV+KA+D + W+FL   ++ FGF+E +  WI   + 
Sbjct: 914  IAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVK 973

Query: 225  SSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASR 284
            S    + +NG  HG     RG+RQGDPLSP LF +  ++L+  I     +G  D+     
Sbjct: 974  SVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG--DIRGIRI 1031

Query: 285  NNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFI-FAGGITD 341
             N +P   H  + DD + FC++ + +   LK +F  Y   SGQ +N+ KS I F   +  
Sbjct: 1032 GNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHG 1091

Query: 342  TRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGR 401
            T  N + NILG         YLG P   G+ K   F  I ++VK + + W A  LS AG+
Sbjct: 1092 TTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGK 1151

Query: 402  IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYE 461
              ++KSV  SM V+ MS +  P+ I+ E+E  + NF W  +  KR++  +AW+++    +
Sbjct: 1152 EIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKK 1211

Query: 462  EGGLGVKSLICLNEATNLKICWNLMQS-DEQWANIIRSRVIRDHRCMN---HHISSSIWS 517
            EGGLG + L   N+A   K  W ++ + +  +A I+++R  R+   ++       S  W+
Sbjct: 1212 EGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWT 1271

Query: 518  GVKAEFHVIKDNCSWIVGDGKQI 540
             + A   VIK    +IVGDGK +
Sbjct: 1272 SMLAGLDVIKKGSRFIVGDGKTV 1294


>At2g05980 putative non-LTR retroelement reverse transcriptase
          Length = 1352

 Score =  292 bits (748), Expect = 3e-79
 Identities = 163/494 (32%), Positives = 257/494 (51%), Gaps = 6/494 (1%)

Query: 60   APGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQY 119
            +PGPD +   FF+  W ++ +D+  A+  FF  G+LP   N   + LI K      +  Y
Sbjct: 617  SPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDY 676

Query: 120  RTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKS 179
            R I+  N  +KI++K++A+RL +ILP+ I+  Q  F++ R + + + L SE +     +S
Sbjct: 677  RPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKES 736

Query: 180  FGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGF 239
                 ALKID++KAFD + W FL+ VLK     E+F +WI+  + ++   + +NG   GF
Sbjct: 737  ISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGF 796

Query: 240  FNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLM 299
            F   RG+RQG  LSP L+ I   VLS  +   A +  I      RN  L   CF  DD+M
Sbjct: 797  FRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCF-ADDIM 855

Query: 300  VFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLP 359
            VF      S+    ++F ++A  S   +++ KS IF  GI+     +I+    F +G+LP
Sbjct: 856  VFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLP 915

Query: 360  FTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSI 419
              YLG P+   +     + P+ +K++A++  W    LS AGR+QL+KSV+ S+    +S+
Sbjct: 916  VKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSV 975

Query: 420  YSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNL 479
            +  P   L+E+EK    F+WSG     K   +AW ++C   EEGGLG+K L   NE + L
Sbjct: 976  FRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLL 1035

Query: 480  KICWNLMQS-DEQWANIIRSRVIRDHRCM----NHHISSSIWSGVKAEFHVIKDNCSWIV 534
            K+ W ++ + D  W   +   +IR         N  + S +W  +  +    +      V
Sbjct: 1036 KLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095

Query: 535  GDGKQINFWSDSWC 548
              G   +FW D WC
Sbjct: 1096 RSGTFTSFWHDHWC 1109


>At2g23880 putative non-LTR retroelement reverse transcriptase
          Length = 1216

 Score =  291 bits (745), Expect = 6e-79
 Identities = 166/530 (31%), Positives = 267/530 (50%), Gaps = 6/530 (1%)

Query: 23  VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDV 82
           +E  +P       +RLLT + T EE+K  +F +  D +PGPD + + F++  W I+  +V
Sbjct: 154 LENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEV 213

Query: 83  YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
             A+  FF  G+LP   N+  + LIPK   A  +  YR I+  N  +K I+K+LA+RL +
Sbjct: 214 IIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKR 273

Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFL 202
           ILP  I   Q  FV+ R + + + L +E +      S     A+KID++KAFD+L W FL
Sbjct: 274 ILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFL 333

Query: 203 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEE 262
             VL    F   F +WI   + ++   I +NG   G+F   RG+RQG  LSP LF I  +
Sbjct: 334 THVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMD 393

Query: 263 VLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADC 322
           VLSR +   A           +   L   CF  DDLM+    K+ S+  +  +  ++A  
Sbjct: 394 VLSRMLDKAAGAREFGYHPRCKTLGLTHLCF-ADDLMILTDGKIRSVDGIVKVLNQFAAK 452

Query: 323 SGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIAD 382
            G  + + K+ ++  G++D     + +   F VG LP  YLG P+   +     + P+ D
Sbjct: 453 LGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLID 512

Query: 383 KVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGD 442
           +++ ++  W +  LS AGR+ L+ SV+ S+    M+ +  P + + E+ +     +WSG 
Sbjct: 513 QIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGP 572

Query: 443 VTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRSRVI 501
               K   V+W +IC   +EGGLG++SL   N+ ++LK+ W L+   D  W    R  ++
Sbjct: 573 ELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLL 632

Query: 502 RDHRC----MNHHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
           +         +  + S IW  +     V K  C   V +G   +FW D+W
Sbjct: 633 KKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNW 682


>At4g02490
          Length = 657

 Score =  288 bits (736), Expect = 7e-78
 Identities = 163/503 (32%), Positives = 258/503 (50%), Gaps = 24/503 (4%)

Query: 51  AVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKT 110
           A+F +  + APGPD F   FF   W IVK+    A+ +FF  G L   FNA +I LIPK 
Sbjct: 2   ALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKV 61

Query: 111 PNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSE 170
           P AD ++ +R +A     +K+I ++++ RL   +   +   Q GF++GR + + + L SE
Sbjct: 62  PGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASE 121

Query: 171 AINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFI 230
            ++    +       L++D+TKA+D +NW+FL+ +LK      +F NWI   + +    I
Sbjct: 122 LVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSI 181

Query: 231 SMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLP- 289
           + NG   GFF   +G+RQGDP+S  LF +V ++L+RS+ + A +G   L       CL  
Sbjct: 182 AYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVL----HPKCLAP 237

Query: 290 --FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNI 347
              H  + DD++VFC   +SSL+ +  +   +   SG  +N++K+ +   G    R   +
Sbjct: 238 MITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIM 297

Query: 348 VNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKS 407
              LG + GSLP  YLG P+   K K   +QP+ D++ ++   W A  LS AGR+QL+KS
Sbjct: 298 AASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKS 357

Query: 408 VVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGV 467
           V+ S +    SI+  P + L ++E+    F+WSG     +   ++W  +C+  E GGLG+
Sbjct: 358 VIYSTINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGL 417

Query: 468 KSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAEFHVI 526
           K L   N+   LK+ W L   S   W + +R                 +W  +     V 
Sbjct: 418 KRLSSWNKVLALKLIWLLFTASGSLWVSWVR----------------WVWRKLCKLREVA 461

Query: 527 KDNCSWIVGDGKQINFWSDSWCG 549
           +      VG G    FW D+W G
Sbjct: 462 RPFVICEVGSGITARFWQDNWTG 484


>At1g25430 hypothetical protein
          Length = 1213

 Score =  286 bits (732), Expect = 2e-77
 Identities = 159/521 (30%), Positives = 269/521 (51%), Gaps = 32/521 (6%)

Query: 44  TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
           + E+++ A+F L  + + GPD F A FF   W+IV  +V +A+ +FF +G L   +NA +
Sbjct: 448 SNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATT 507

Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
           I+LIPK  N      +R I+ +N  +K+I ++L DRL ++L  +IS  Q  F+ GR++ +
Sbjct: 508 IVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAE 567

Query: 164 CIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTIL 223
            + L ++ ++  +  +      LK+D+ KAFD++ W+F++  L+     E F NWI   +
Sbjct: 568 NVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCI 627

Query: 224 HSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAAS 283
            +    +S+NG   GFF   +G+RQGDPLSP LF +  E  S  +    + GLI     +
Sbjct: 628 STPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKA 687

Query: 284 RNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTR 343
            N  +  H  + DD+M+F      SL  +      +A  SG  +N  KS ++  G+    
Sbjct: 688 SNLSIS-HLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLE 746

Query: 344 MNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQ 403
            +N     GF +G+LP  YLG P+   K +   ++P+ +K+ A+   W    LS AGRIQ
Sbjct: 747 -SNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQ 805

Query: 404 LVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEG 463
           L+ SV+   +   MS +  P   +K +E     F+WSG++ + K + V+W  +C    EG
Sbjct: 806 LISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEG 865

Query: 464 GLGVKSLICLNEATNLKICWNL-MQSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAE 522
           GLG++ L+  N+  ++++ W L +  D  WA         D + ++H    S W+    +
Sbjct: 866 GLGLRRLLEWNKTLSMRLIWRLFVAKDSLWA---------DWQHLHHLSRGSFWAVEGGQ 916

Query: 523 FHVIKDNCSW----------------IVGDGKQINFWSDSW 547
                D+ +W                 VG+G + ++W D+W
Sbjct: 917 ----SDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNW 953


>At3g25485 unknown protein
          Length = 979

 Score =  284 bits (726), Expect = 1e-76
 Identities = 162/505 (32%), Positives = 258/505 (51%), Gaps = 26/505 (5%)

Query: 44  TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
           T EE+K  +F ++SD +PGPD F   F++  W I+  +   AV  FF+ G+LP   N+  
Sbjct: 370 TGEEIKTVLFFMSSDKSPGPDGFTTEFYKATWEIIGAEFIVAVKSFFEKGFLPKGVNSTI 429

Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
           + LIPK      +  YR I+  N  +K+I+K++A RL +ILP  I+  Q  FV+ R +  
Sbjct: 430 LALIPKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEILPQFIAGNQSAFVKDRLLIQ 489

Query: 164 CIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTIL 223
            + L +E +     +S     A+KID++KAFD++ W FL  VL +  F++ F +WI   +
Sbjct: 490 NLLLATEIVKDYHKESVSDRCAIKIDISKAFDSVQWSFLENVLHSLNFSQEFIHWIMLCI 549

Query: 224 HSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAAS 283
            ++   + +NG   GFFN +RG+RQG  LSP LF I  +VLS+ +   A           
Sbjct: 550 TTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFVIAMDVLSKMLDRAAGFKKFGYHPRC 609

Query: 284 RNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTR 343
           +   L  H  + DDLMV    K+ S+  + S+F  +A  SG  +++ KS I+  G  +  
Sbjct: 610 QTIGLT-HLTFADDLMVLSDGKVRSVEGIVSVFDEFAKKSGLKISMEKSTIYLAGSANMY 668

Query: 344 MNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQ 403
              I     F VGSLP  YLG P+   +     ++P+ +++K K+  W A  LS AGR+ 
Sbjct: 669 RREIEERFKFAVGSLPVRYLGLPLVTKRFSSADYRPLVEQIKRKIGTWTARYLSYAGRLN 728

Query: 404 LVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEG 463
           L+ SV+ S+    ++ +  P + ++E++K    F+WSG     K   V W  IC    EG
Sbjct: 729 LISSVIWSICNFWIAAFRLPRECIREIDKLCSAFLWSGPELNSKRAKVNWEAICKPKREG 788

Query: 464 GLGVKSLICLNEATNLKICWN-LMQSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAE 522
           GLG++SL   N+ + LK+ W  + + D  W  +++ R                       
Sbjct: 789 GLGLRSLKEANDVSCLKLIWRWVSRGDSLWRKLLKYR----------------------- 825

Query: 523 FHVIKDNCSWIVGDGKQINFWSDSW 547
               K  C   + +G + +FW D+W
Sbjct: 826 -DTAKQFCKVDIRNGGRTSFWFDNW 849


>At2g31080 putative non-LTR retroelement reverse transcriptase
          Length = 1231

 Score =  282 bits (721), Expect = 4e-76
 Identities = 170/513 (33%), Positives = 262/513 (50%), Gaps = 9/513 (1%)

Query: 44  TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
           TK EV +AV  +    APGPD +   F+Q  W  V   V   VL+FF+ G LP + N   
Sbjct: 293 TKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDAL 352

Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
           ++LI K    + + Q+R ++L N  FKII K++  RL  ++  +I   Q  F+ GR   D
Sbjct: 353 LVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSID 412

Query: 164 CIALTSEAINVLDNKSFG-GNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTI 222
            I L  EA++ +  K    G + LK+D+ KA+D + WDFL   L+  G +E + + I   
Sbjct: 413 NIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAG 472

Query: 223 LHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAA 282
           +    M +  NG +   F   RG+RQGDPLSP LF +  E L   I     K     IA 
Sbjct: 473 VTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAV 532

Query: 283 SRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDT 342
           S       H  + DDL++F +A ++ + +++ +  R+ + SGQ +++ KS IF       
Sbjct: 533 SCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSR 592

Query: 343 RMNNIVNI-LGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGR 401
            M  +++   G         YLG PI + +     F  + ++V A+LA WK   LS+AGR
Sbjct: 593 EMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGR 652

Query: 402 IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYE 461
           I L K+V+ S+ VH MS    P+  L  ++++ + F+W   + K+K   ++WRKIC    
Sbjct: 653 ITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKA 712

Query: 462 EGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSRV----IRDHRCMNHHIS-SSI 515
           EGG+G++S   +N+A   K+ W L+Q  E  WA ++R +     ++D   +      SS 
Sbjct: 713 EGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSST 772

Query: 516 WSGVKAEF-HVIKDNCSWIVGDGKQINFWSDSW 547
           W  V      V+     W+ GDG  I FW D W
Sbjct: 773 WRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW 805


>At4g09710 RNA-directed DNA polymerase -like protein
          Length = 1274

 Score =  281 bits (718), Expect = 9e-76
 Identities = 171/550 (31%), Positives = 271/550 (49%), Gaps = 25/550 (4%)

Query: 19  DHLLVEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIV 78
           D  +V+EA+  ++ +  N  L  + +  E+K A+F +++D APGPD F A FF  YW+I+
Sbjct: 345 DLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDII 404

Query: 79  KKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLAD 138
           + DV   +  FF +  L    N   + LIPK      V  YR IAL N ++KI+ K+L  
Sbjct: 405 EADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTR 464

Query: 139 RLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVL--DNKSFGGNLALKIDVTKAFDT 196
           RL   L  +IS  Q  FV GR I D + +T E ++ L         ++A+K D++KA+D 
Sbjct: 465 RLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDR 524

Query: 197 LNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLL 256
           + W+FL  VL   GF++ +  W+   + +      +NG+  G    +RG+RQGDPLSP L
Sbjct: 525 IKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYL 584

Query: 257 FCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLF 316
           F +  EVLS       +KG++  I  +R +    H  + DD M FCK   +    L ++ 
Sbjct: 585 FILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNIL 644

Query: 317 TRYADCSGQIMNIRKSFIFAGGIT--DTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKG 374
            +Y   SGQ +N+ KS I     T  D +    +++   N G +   YLG P   G+ K 
Sbjct: 645 KKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIG-KYLGLPEHFGRRKR 703

Query: 375 IHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWI 434
             F  I D+++ +   W    LS AG+  L+K+V+ SM  + M  +  P  + K+++  +
Sbjct: 704 DIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVL 763

Query: 435 KNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWAN 494
             F W     KRKM  V+W K+     EGGLG + +         K+ W +++       
Sbjct: 764 TRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREI-------EAKLSWRILKEPHS--- 813

Query: 495 IIRSRVIRDHRC---------MNHHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSD 545
            + SRV+    C          +   +S  W G+ A   +++    W +G G  IN W++
Sbjct: 814 -LLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTE 872

Query: 546 SWCGQVLAQT 555
           +W      QT
Sbjct: 873 AWLSPSSPQT 882


>At2g25550 putative non-LTR retroelement reverse transcriptase
          Length = 1750

 Score =  281 bits (718), Expect = 9e-76
 Identities = 178/531 (33%), Positives = 278/531 (51%), Gaps = 23/531 (4%)

Query: 31   VDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFF 90
            V  T N  LT   +  E+ +A+  +  D APGPD   A F++  W+IV  DV   V  FF
Sbjct: 798  VTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFF 857

Query: 91   KNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISK 150
            +  ++  + N  +I +IPK  N  ++  YR IAL N  +K+I+K L +RL   L SI+S 
Sbjct: 858  ETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSD 917

Query: 151  EQRGFVQGRNIRDCIALTSEAINVLD-----NKSFGGNLALKIDVTKAFDTLNWDFLLLV 205
             Q  F+ GR I D + +  E ++ L      +K++   +A+K DV+KA+D + WDFL   
Sbjct: 918  SQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTY---MAVKTDVSKAYDRVEWDFLETT 974

Query: 206  LKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLS 265
            ++ FGF   +  WI   + S    + +NG+ HG+    RG+RQGDPLSP LF +  ++LS
Sbjct: 975  MRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILS 1034

Query: 266  RSISILADKGLIDLIAASRNNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCS 323
              I+  A  G  DL      N  P   H  + DD + FC+A + +   LK +F  Y   S
Sbjct: 1035 HLINGRASSG--DLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYS 1092

Query: 324  GQIMNIRKSFIFAG----GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQP 379
            GQ +N++KS I  G    G T +R+  I+ I     G     YLG P   G+ K   F+ 
Sbjct: 1093 GQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGG---KYLGLPEQFGRKKKEMFEY 1149

Query: 380  IADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIW 439
            I D+VK + + W A  LS AG+  ++KSV  +M V+ MS +  P  I+ E+E  + NF W
Sbjct: 1150 IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWW 1209

Query: 440  SGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRS 498
                 +R +  VAW+++    +EGGLG + L   N+A   K  W L+Q  +  +A ++++
Sbjct: 1210 EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1269

Query: 499  RVIRDHRCMNHHI---SSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDS 546
            R  +D   ++  +    S  W+ +     ++K     ++GDG+ I    D+
Sbjct: 1270 RYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN 1320


>At2g11240 pseudogene
          Length = 1044

 Score =  281 bits (718), Expect = 9e-76
 Identities = 172/534 (32%), Positives = 265/534 (49%), Gaps = 19/534 (3%)

Query: 23  VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDV 82
           ++EAI   +    N         EE+K+A F +++D APGPD F A FFQ  W  V  ++
Sbjct: 242 IKEAIKPFISPEQN--------PEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNI 293

Query: 83  YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
              +  FF +  L    N   I LIPK  +   +  YR IAL    +KII+K+L+ RL  
Sbjct: 294 VLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQP 353

Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGN----LALKIDVTKAFDTLN 198
           IL  IIS+ Q  FV  R   D + +T EA++ L  KS G      +A+K +++KA+D + 
Sbjct: 354 ILQEIISENQSAFVPKRASNDNVLITHEALHYL--KSLGAEKRCFMAVKTNMSKAYDRIE 411

Query: 199 WDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFC 258
           WDF+ LV++  GF++ + +WI   + +      +NG+  G     RG+RQGDPLSP LF 
Sbjct: 412 WDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFI 471

Query: 259 IVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTR 318
           I  EVLS         G +  +  S+ N    H  + DD + FC++ + S      +  +
Sbjct: 472 ICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKK 531

Query: 319 YADCSGQIMNIRKSFI-FAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHF 377
           Y + SGQ++N  KS I F+    D        ILG  +      YLG P   G+ K   F
Sbjct: 532 YEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLF 591

Query: 378 QPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNF 437
             I D+++ +   W +  LS AG+  ++KSV+ SM  +TMS +   + + K ++  + +F
Sbjct: 592 NQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHF 651

Query: 438 IWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDE-QWANII 496
            W     K+KM  +AW K+  + +EGGLG K +   N+A   K+ W ++QS       I+
Sbjct: 652 WWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRIL 711

Query: 497 RSRVIRDHR---CMNHHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
             +  R      C     SS  W G+     +IK     ++G G     W++ W
Sbjct: 712 LGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPW 765


>At2g31520 putative non-LTR retroelement reverse transcriptase
          Length = 1524

 Score =  280 bits (715), Expect = 2e-75
 Identities = 177/531 (33%), Positives = 278/531 (52%), Gaps = 23/531 (4%)

Query: 31   VDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFF 90
            V  T N  LT   +  E+ +A+  +  D APGPD   A F++  W+IV  DV   V  FF
Sbjct: 572  VTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFF 631

Query: 91   KNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISK 150
            +  ++  + N  +I +IPK  N  ++  YR IAL N  +K+I+K L +RL   L SI+S 
Sbjct: 632  ETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSD 691

Query: 151  EQRGFVQGRNIRDCIALTSEAINVLD-----NKSFGGNLALKIDVTKAFDTLNWDFLLLV 205
             Q  F+ GR I D + +  E ++ L      +K++   +A+K DV+KA+D + WDFL   
Sbjct: 692  SQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTY---MAVKTDVSKAYDRVEWDFLETT 748

Query: 206  LKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLS 265
            ++ FGF   +  WI   + S    + +NG+ HG+    RG+RQGDPLSP LF +  ++LS
Sbjct: 749  MRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILS 808

Query: 266  RSISILADKGLIDLIAASRNNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCS 323
              I+  A  G  DL      N  P   H  + DD + FC+A + +   LK +F  Y   S
Sbjct: 809  HLINGRASSG--DLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYS 866

Query: 324  GQIMNIRKSFIFAG----GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQP 379
            GQ +N++KS I  G    G T +++  I+ I     G     YLG P   G+ K   F+ 
Sbjct: 867  GQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGG---KYLGLPEQFGRKKKEMFEY 923

Query: 380  IADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIW 439
            I D+VK + + W A  LS AG+  ++KSV  +M V+ MS +  P  I+ E+E  + NF W
Sbjct: 924  IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWW 983

Query: 440  SGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRS 498
                 +R +  VAW+++    +EGGLG + L   N+A   K  W L+Q  +  +A ++++
Sbjct: 984  EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1043

Query: 499  RVIRDHRCMNHHI---SSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDS 546
            R  +D   ++  +    S  W+ +     ++K     ++GDG+ I    D+
Sbjct: 1044 RYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN 1094


>At2g14430 putative non-LTR retroelement reverse transcriptase
          Length = 1277

 Score =  280 bits (715), Expect = 2e-75
 Identities = 167/520 (32%), Positives = 259/520 (49%), Gaps = 36/520 (6%)

Query: 33   ATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKN 92
            AT   +LT   T EE++  +F + S+ +PGPD +                          
Sbjct: 615  ATDQDMLTREVTSEEIQKVLFAMPSNKSPGPDGY-------------------------- 648

Query: 93   GWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQ 152
                   NA  + LIPK   A  +  YR I+  N  +K+I+K++A+RL  +LP+ I + Q
Sbjct: 649  ----TRLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQ 704

Query: 153  RGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFN 212
              FV+ R + + + L +E +      S     A+KID++KAFD++ W FLL  L+   F 
Sbjct: 705  SAFVRERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFP 764

Query: 213  ELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILA 272
            E F +WIK  + ++   + +N  Q GFF   RG+RQG  LSP LF I   VLS  I + A
Sbjct: 765  EKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAA 824

Query: 273  DKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKS 332
                I      +   L   CF  DDLMVF   +  S+  + ++F  +A  SG  +++ KS
Sbjct: 825  VHRNIGYHPKCKKLSLTHLCF-ADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKS 883

Query: 333  FIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWK 392
             ++   +++   NNI++   F  G LP  YLG P+   +     + P+ DKV++K++ W 
Sbjct: 884  TLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWT 943

Query: 393  ASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVA 452
            A  LS AGR+ L+ SV+ S+    MS Y  P   +KE+EK    F+WSG     K   + 
Sbjct: 944  ARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKIT 1003

Query: 453  WRKICADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHI 511
            W  +C   +EGGLG+KSL+  N+ + LK+ W L+ +    W N + + +IR     + + 
Sbjct: 1004 WTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAND 1063

Query: 512  SSSI----WSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
             SS+    W  +     V K  C   +  G   +FW D+W
Sbjct: 1064 RSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNW 1103


>At1g31030 F17F8.5
          Length = 872

 Score =  280 bits (715), Expect = 2e-75
 Identities = 156/517 (30%), Positives = 264/517 (50%), Gaps = 6/517 (1%)

Query: 36  NRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWL 95
           N +LT   + EE+K  +F +  D +PGPD + + F++  W+I+ ++    V  FF+ G+L
Sbjct: 93  NEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFL 152

Query: 96  PNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGF 155
           P   N+  + LIPK   A  +  YR I+  N  +K+I+K++A+RL  +LP  I++ Q  F
Sbjct: 153 PKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAF 212

Query: 156 VQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELF 215
           V+ R + + + L +E +      S     A+KID++KAFD++ W FL   L    F+  F
Sbjct: 213 VKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTF 272

Query: 216 CNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKG 275
            +WI   + ++   + +NG   G+F   RG+RQG  LSP LF I  +VLS+ +   A   
Sbjct: 273 IHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVR 332

Query: 276 LIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIF 335
                   +   L  H  + DDLMV    K  S+  +  +F  +   SG  +++ KS ++
Sbjct: 333 KFGFHPKCQRLGLT-HLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLY 391

Query: 336 AGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASL 395
             G++      I     F+VG LP  YLG P+   +     + P+ +++K ++A W    
Sbjct: 392 MAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRF 451

Query: 396 LSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRK 455
            S AGR  L+KSV+ S+    ++ +  P + ++E++K   +F+WSG         ++W  
Sbjct: 452 FSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDI 511

Query: 456 ICADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHISSS 514
           +C    EGGLG+++L   N+ + LK+ W ++  S+  W   +   +IR     +   S+S
Sbjct: 512 VCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTS 571

Query: 515 ----IWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
               IW  +     V K      VG+G+  +FW D W
Sbjct: 572 MGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHW 608


>At3g32110 non-LTR reverse transcriptase, putative
          Length = 1911

 Score =  278 bits (712), Expect = 4e-75
 Identities = 169/515 (32%), Positives = 258/515 (49%), Gaps = 13/515 (2%)

Query: 47   EVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIIL 106
            EV+ A+  +    APGPD F   F+Q  W +V + V + V+DFF +G  P   N   ++L
Sbjct: 972  EVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVL 1031

Query: 107  IPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIA 166
            I K    + + Q+R I+L N  FK I KV+  RL  ++  +I   Q  F+ GR   D I 
Sbjct: 1032 IAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIV 1091

Query: 167  LTSEAINVLDNKS-FGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHS 225
            +  E ++ +  K    G + LK+D+ KA+D + WD L   LK  G    +  WI   +  
Sbjct: 1092 VVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEG 1151

Query: 226  SKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSI--SILADKGLIDLIAAS 283
              M +  NG +   F   RG+RQGDPLSP LF +  E L   I  SI A K     I  S
Sbjct: 1152 PSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKW--KPIKIS 1209

Query: 284  RNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFI-FAGGITDT 342
            ++     H  + DDL++F +A +  + VL+ +  ++   SGQ +++ KS I F+  +   
Sbjct: 1210 QSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRD 1269

Query: 343  RMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRI 402
                I    G         YLG PI + +     F  +  +  ++LA WK  +LS AGR+
Sbjct: 1270 LGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRL 1329

Query: 403  QLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEE 462
             L K+V+ S+LVHTMS    P   L  ++K  + F+W   + K+K   VAW ++C    E
Sbjct: 1330 TLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRRE 1389

Query: 463  GGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSRV-IRDHRCMNHHISSSIWSGVK 520
            GGLG++S   +N+A   K+ W ++      WA ++RS+  + D    N  ++ S WS   
Sbjct: 1390 GGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTW 1449

Query: 521  AEF-----HVIKDNCSWIVGDGKQINFWSDSWCGQ 550
                     VI     W++GDG+QI FW+D W  +
Sbjct: 1450 RSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSE 1484


>At2g17910 putative non-LTR retroelement reverse transcriptase
          Length = 1344

 Score =  270 bits (690), Expect = 2e-72
 Identities = 165/548 (30%), Positives = 273/548 (49%), Gaps = 11/548 (2%)

Query: 11  FLLTIFLQDHLLVE----EAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVF 66
           F   +F   ++L      E +   V +  N  L    T+ EV NAVF +N + APGPD F
Sbjct: 370 FFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGF 429

Query: 67  GACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVN 126
            A FFQ +W++VK  +   +  FF+ G LP ++N   I LIPK  +   +   R I+L +
Sbjct: 430 TALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCS 489

Query: 127 FKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVL--DNKSFGGNL 184
             +KII+K+L  RL K LP+I+S  Q  FV  R I D I +  E I+ L  +++    ++
Sbjct: 490 VLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHM 549

Query: 185 ALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNR 244
           A K D++KA+D + W FL  ++   GFN  + +WI   + S    + +NG  +G     R
Sbjct: 550 AFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTR 609

Query: 245 GVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKA 304
           G+RQGDPLSP LF +  E L   ++     G I  I          H  + DD ++ CKA
Sbjct: 610 GIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKA 669

Query: 305 KMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNN-IVNILGFNVGSLPFTYL 363
                  L    ++Y   SGQ++N+ KS I  G   D ++ + I +  G ++      YL
Sbjct: 670 TKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYL 729

Query: 364 GAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWP 423
           G P      K   F  I +K++++L  W A  LS  G+  L+KS+  ++ V+ MS +  P
Sbjct: 730 GLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLP 789

Query: 424 IKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICW 483
             + +++   + +F W+    KRK+  ++W+++    ++GG G K L C N+A   K  W
Sbjct: 790 KNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAW 849

Query: 484 NLMQ-SDEQWANIIRSRVIRDHRCMNHHISSS---IWSGVKAEFHVIKDNCSWIVGDGKQ 539
            ++Q     ++ + +SR   +   ++    S     W  +     ++      ++G+G++
Sbjct: 850 RVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQK 909

Query: 540 INFWSDSW 547
              W+D W
Sbjct: 910 TFVWTDKW 917


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,481,810
Number of Sequences: 26719
Number of extensions: 528691
Number of successful extensions: 1756
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 105
length of query: 555
length of database: 11,318,596
effective HSP length: 104
effective length of query: 451
effective length of database: 8,539,820
effective search space: 3851458820
effective search space used: 3851458820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)