BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149131.10 - phase: 0 /pseudo
(188 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16930 hypothetical protein 72 2e-13
At5g60610 unknown protein 68 3e-12
At1g06630 unknown protein 68 3e-12
At1g49610 hypothetical protein 67 4e-12
At5g02930 putative protein 67 7e-12
At5g52460 putative protein 66 1e-11
At1g80470 hypothetical protein 66 1e-11
At5g56440 putative protein 65 2e-11
At3g44060 putative protein 65 2e-11
At5g56370 unknown protein 64 4e-11
At3g58930 putative protein 64 4e-11
At5g22660 unknown protein 64 5e-11
At5g02910 unknown protein 64 6e-11
At1g69630 hypothetical protein 64 6e-11
At5g22730 unknown protein 63 8e-11
At3g58960 putative protein 63 8e-11
At1g48400 62 2e-10
At5g53630 heat shock transcription factor HSF30-like protein 61 3e-10
At5g02700 putative protein 61 3e-10
At5g53840 putative protein 61 4e-10
>At1g16930 hypothetical protein
Length = 449
Score = 71.6 bits (174), Expect = 2e-13
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 22/146 (15%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFN 76
D+I++LPD +L QILS + +E+ TS+LSKRW +LW +D D D SF
Sbjct: 15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDDVFVSFV 74
Query: 77 D----SMSSILLSRY---HNINK--------WINFVVQHGLKYLRLGLHISVEDDDDDAY 121
+ S + L R+ + +N+ WIN V++ + +H V+DDD
Sbjct: 75 NRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKR--RVCHFNVHNEVDDDD---- 128
Query: 122 VDIPILPVSILTCRTLVSLDLWRVLI 147
++ +P+S+ +C LV+L L+RV +
Sbjct: 129 -ELVKMPLSLYSCERLVNLQLYRVAL 153
>At5g60610 unknown protein
Length = 388
Score = 68.2 bits (165), Expect = 3e-12
Identities = 55/173 (31%), Positives = 82/173 (46%), Gaps = 31/173 (17%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFT-----DCID--FTDIILND 68
+D+I+ LPDE+L +I+S +P + A +TSILSKRW LWK+ DC + D IL +
Sbjct: 1 MDRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPKLECDCTEPALRDFILKN 60
Query: 69 TDSTYSFNDSM------SSILLSRYHNINKWINFVVQHGLKYLRLGLHISVEDDDDDAYV 122
+S+ S L + +I W + H L+ LR+ + YV
Sbjct: 61 LPLQARIIESLYLRFRRESFL---FQDIKLWGGIAISHCLRELRIDFFSHYA----NPYV 113
Query: 123 DIPILPVSILTCRTLVSLDLWRVLIFLLLGLDFHHSMPFIWTIRSSNTFQILC 175
ILP S+ TC++LV+L LLGL +P + S T + C
Sbjct: 114 ---ILPRSLYTCKSLVTLK--------LLGLGIRVDVPRDVCLPSLKTLLLQC 155
>At1g06630 unknown protein
Length = 403
Score = 68.2 bits (165), Expect = 3e-12
Identities = 43/150 (28%), Positives = 74/150 (48%), Gaps = 31/150 (20%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDII--LNDTDSTYS 74
D IN LPDEIL +ILSL+ ++A +TS+LSK+W L+K D ++F D + + + +++Y
Sbjct: 12 DAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGMGEQEASYV 71
Query: 75 FNDSMSSILLSRYHNINKWINFVVQHGLKYLRLGLHISVEDDDDDAYV------------ 122
F +S + +++ + + ++ L L H+ +D+ A V
Sbjct: 72 FPESFKDL-------VDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRGV 124
Query: 123 ----------DIPILPVSILTCRTLVSLDL 142
+ L +LTC+TLV L L
Sbjct: 125 SEVVLRINDRGLHFLSPQLLTCKTLVKLTL 154
>At1g49610 hypothetical protein
Length = 354
Score = 67.4 bits (163), Expect = 4e-12
Identities = 44/130 (33%), Positives = 62/130 (46%), Gaps = 18/130 (13%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSF 75
VD I+SLPD IL + LSLIP + A TS+LSKRW H+W T +DF D D D F
Sbjct: 25 VDSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHVWSETPSLDFDDCYKLDVD----F 80
Query: 76 NDSMSSILLSR--------------YHNINKWINFVVQHGLKYLRLGLHISVEDDDDDAY 121
D ++ +R I+ WI F + ++ L L + D D Y
Sbjct: 81 IDKTLALYRARKIMTFDLWITNGINLPYIDGWIKFAMSRNVENLFLSFDFRLYDVPDYLY 140
Query: 122 VDIPILPVSI 131
++ + +SI
Sbjct: 141 INSSVKQLSI 150
>At5g02930 putative protein
Length = 469
Score = 66.6 bits (161), Expect = 7e-12
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 5 RRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF--- 61
+R + VD I+ LPD +L I S IP E A TS+LSKRW H+W T + F
Sbjct: 16 KRSKNVSVDVGVDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWL 75
Query: 62 --TDIILNDTDSTYSFNDSMSSILLSRY------HNINKWINFVVQHGLKYLRL 107
+ ++N T ++Y+ + S L +RY H++N I F + H + L L
Sbjct: 76 KVSPKLINKTLASYTASKIKSFHLCTRYSYEADTHHVNSSIEFAMSHNVDDLSL 129
>At5g52460 putative protein
Length = 331
Score = 65.9 bits (159), Expect = 1e-11
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 3 RRRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFT 62
R +RI E D+I+SLPD++L QIL L+P+++A T ILSKRW ++W ++++
Sbjct: 4 RCQRIDEEVVASR-DEISSLPDDLLIQILLLVPIKDAVGTMILSKRWRYVWTLLPKLEYS 62
Query: 63 DIILNDTDSTYSFNDSMSSILLSRYHNINKWINFVVQHGLKYLRLGLHISVEDDDDDAYV 122
D ++ +S + F + + + L + + +V ++ L L LH + E
Sbjct: 63 D-PGDECESVWKFLEKL--LELHKAPFLETLCIQLVDRFVRKLELELHWTAEPTS----- 114
Query: 123 DIPILPVSILTCRTLVSLDL 142
LP S+ TC+TLV L L
Sbjct: 115 ----LPKSLYTCKTLVELTL 130
>At1g80470 hypothetical protein
Length = 464
Score = 65.9 bits (159), Expect = 1e-11
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 22/145 (15%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFN 76
D I+ L D++L QILS +P E+ TS +SKRW +LW+ +D F
Sbjct: 15 DWISGLADDLLLQILSKVPTRESVFTSRMSKRWRNLWRHVPALDLDSSKFPHESDLEDFF 74
Query: 77 DSM----SSILLSRY---HNINKW--------INFVVQHGLKYLRLGLHISVEDDDDDAY 121
DS ++ + R+ +N+ + I+ VV+ GLK L + +++EDD
Sbjct: 75 DSFLQFDGNLKIERFKWIYNVEEHCDPEFVSRIDHVVKRGLKDLTILSKVNIEDDS---- 130
Query: 122 VDIPILPVSILTCRTLVSLDLWRVL 146
+PVS+ +C TLV+L L+ V+
Sbjct: 131 ---VRMPVSLYSCATLVNLTLYSVV 152
>At5g56440 putative protein
Length = 430
Score = 65.1 bits (157), Expect = 2e-11
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 34/176 (19%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTD--STY 73
+D+I+ LPD+++ +ILS +P + +T++LSKRW +LWK +D+ D L DT+
Sbjct: 1 MDRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRDPSLVDTEHWRAS 60
Query: 74 SFNDS---------MSSILLSRYHN-----INKWINFVVQHGLKYLRLGLHISVEDDDDD 119
F D + ++ LS N I WI+ + ++ L + +I
Sbjct: 61 RFVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHIYRYIPSTG---- 116
Query: 120 AYVDIPI-LPVSILTCRTLVSLDLWRVLIFLLLGLDFHHSMPFIWTIRSSNTFQIL 174
PI LP S+ TC TLVSL +LLL + PF++ RS +L
Sbjct: 117 -----PIRLPRSLYTCETLVSL-------YLLLDFTVDDA-PFMFCFRSLKVLVLL 159
>At3g44060 putative protein
Length = 427
Score = 65.1 bits (157), Expect = 2e-11
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 26/143 (18%)
Query: 19 INSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIIL-NDTDSTYSFND 77
++ LPD++L QIL L+P +EA +TS+LSKRW L+ +D +DF D I D SFND
Sbjct: 1 MDCLPDDLLVQILYLLPTKEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPEDILKSFND 60
Query: 78 SMSSILLSR------------------YHNINKWINFVVQHGLKYLRLGLHISVEDDDDD 119
+ S L + YH +++WI ++HG+ L L L +
Sbjct: 61 FVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHLM-------HE 113
Query: 120 AYVDIPILPVSILTCRTLVSLDL 142
++ + +P + TLV L L
Sbjct: 114 SWPWLFSIPSKVFNSSTLVKLSL 136
>At5g56370 unknown protein
Length = 421
Score = 64.3 bits (155), Expect = 4e-11
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTY-- 73
+D I+ LPD+ L +ILSL+P ++ TS+LSKRW +LWK + ++ I N T+
Sbjct: 1 MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKNADHGTFVR 60
Query: 74 ----SFNDSMSSILLSRYHNINK---------WINFVVQHGLKYLRLGLHISVEDDDDDA 120
S SM+ +L S + + + W+ V+ GL L D D +
Sbjct: 61 FVDRSLLLSMAPVLESLHLKLGRQCSEVDIGFWVRIAVEKGLCEL---------DFDYEH 111
Query: 121 YVDIPI-LPVSILTCRTLVSLDLWRV 145
Y P LP S+ TC TL L L V
Sbjct: 112 YKTEPCRLPQSLFTCGTLTVLKLKNV 137
>At3g58930 putative protein
Length = 455
Score = 64.3 bits (155), Expect = 4e-11
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKF-------------------- 55
+D++++LPD + ILS +P + A TS+LSK W +LWK
Sbjct: 1 MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60
Query: 56 -----TDCIDFTDIILNDTDSTYSFNDSMSSILLSRYHNINKWINFVVQHGLKYLRLGLH 110
+DF D +L D + S+ I ++N+WI V+Q G+ L L +
Sbjct: 61 RLEIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDHVNRWICNVLQRGVSDLDLFID 120
Query: 111 ISVEDDDDDAYVDIPILPVSILTCRTLVSLDL 142
S ED +D +LP + +TLV L +
Sbjct: 121 FSYEDTQEDE----DMLPQEMFVSKTLVKLKI 148
>At5g22660 unknown protein
Length = 315
Score = 63.9 bits (154), Expect = 5e-11
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 30/149 (20%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTY--- 73
D+I+SLPD +LSQILS +P E A TSILS RW LW T +D DI D +T+
Sbjct: 13 DRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVLDI-DIDAFDDATTFISF 71
Query: 74 ------SFNDSMSSILLSRYH-------NINKWINFVVQHGLKYLRLGLHISVEDDDDDA 120
SF DS L + I WI V+ +++L + D+
Sbjct: 72 ATRFLDSFKDSCLHKLQISFQMEAVDMWTIIPWIEDAVKRRIQHLEV-----------DS 120
Query: 121 YVD--IPILPVSILTCRTLVSLDLWRVLI 147
+D I LP+++ +LVSL L V++
Sbjct: 121 RIDHMIDTLPLTVYLSESLVSLRLHLVML 149
>At5g02910 unknown protein
Length = 458
Score = 63.5 bits (153), Expect = 6e-11
Identities = 39/101 (38%), Positives = 54/101 (52%), Gaps = 9/101 (8%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTD--CIDFTDIILNDTDSTY 73
+D I+SLPDEIL ILS +P + A TS+LSKRW ++W T ID N D T
Sbjct: 10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69
Query: 74 SFNDS-------MSSILLSRYHNINKWINFVVQHGLKYLRL 107
SF + + + LL+R ++N I F + H + L L
Sbjct: 70 SFFSAPKITSFHLHTTLLNRIDSVNGCIEFAISHNAEKLSL 110
>At1g69630 hypothetical protein
Length = 451
Score = 63.5 bits (153), Expect = 6e-11
Identities = 46/145 (31%), Positives = 70/145 (47%), Gaps = 26/145 (17%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSF 75
VD I+ LPD +L ++L +P ++ TS+LS+RW +LWK +D + + ++ SF
Sbjct: 17 VDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNTDFQEFNTFLSF 76
Query: 76 NDSM----SSILLSRY--------------HNINKWINFVVQHGLKYLRLGLHISVEDDD 117
DS S L ++ I +WIN +V ++ HI V DD
Sbjct: 77 VDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTIVTRKVQ------HIDVLDDS 130
Query: 118 DDAYVDIPILPVSILTCRTLVSLDL 142
++ LP SI TC +LVSL L
Sbjct: 131 YGSWE--VQLPSSIYTCESLVSLKL 153
>At5g22730 unknown protein
Length = 457
Score = 63.2 bits (152), Expect = 8e-11
Identities = 50/167 (29%), Positives = 80/167 (46%), Gaps = 29/167 (17%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFN 76
D I+ LPD +++QIL +P+++ TS LS RW LW +D D ++ F
Sbjct: 19 DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQDYNAFVGFM 78
Query: 77 DS-----------MSSILLSRYHNIN------KWINFVVQHGLKYLRLGLHISVEDDDDD 119
+ + + LS +N +WI+FVV+ LK H+ VE +
Sbjct: 79 NKFIDFSGEEKICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLK------HLDVECLVNR 132
Query: 120 AYVDIPILPVSILTCRTLVSLDLWRVLIFLLLGLDFHHSMPFIWTIR 166
+++ +P+S+ C TLV+L L RV LLG S+P + T+R
Sbjct: 133 KFLE--EMPLSLYVCDTLVNLRLHRV----LLGKFEAVSLPCLKTMR 173
>At3g58960 putative protein
Length = 475
Score = 63.2 bits (152), Expect = 8e-11
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 24/147 (16%)
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSF 75
+D+I+SL ++I+S I+S + ++AA S+LSKRW +++ ++F + + N T
Sbjct: 1 MDRISSLSNDIISNIVSFLSAKDAAVASVLSKRWQNIYTIVPNLEFDNTLENQGSLTDFL 60
Query: 76 NDSMSSILLSRYHNI----------------NKWINFVVQHGLKYLRLGLHISVEDDDDD 119
N ++ +R N+ N+++ V++ G+ L+L + +++ D
Sbjct: 61 NGLLALPASTRIKNVSIKRRGRDGPNRDADLNRFLCNVLKRGVLKLKLDIWVTL----DG 116
Query: 120 AYVDIPILPVSILTCRTLVSLDLWRVL 146
Y LPV + TC+TLV L+L +L
Sbjct: 117 RY----SLPVEVFTCKTLVELELGSIL 139
>At1g48400
Length = 513
Score = 61.6 bits (148), Expect = 2e-10
Identities = 48/152 (31%), Positives = 72/152 (46%), Gaps = 36/152 (23%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTD--CIDFTDIILND------ 68
D I++LPDEIL +ILSL+P + AA+TS+LSKRW +L D C D + ++ +
Sbjct: 10 DSISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLLGLVDNLCFDESMVVYPNEEEETS 69
Query: 69 --------TDSTYSF--NDSMSSILLSRYHNIN--------KWINFVVQHGLKYLRLGLH 110
D T++ N + LSR + N +WI V++ GL L + LH
Sbjct: 70 GSLRFCDFVDKTFALLSNSHIKKFSLSRVYKYNDDVDGMVRRWIRTVMERGL--LEIHLH 127
Query: 111 ISVEDDDDDAYVDIPILPVSILTCRTLVSLDL 142
+ + + +LT TLV L L
Sbjct: 128 ATP--------MSFVAIETKLLTSNTLVKLTL 151
>At5g53630 heat shock transcription factor HSF30-like protein
Length = 426
Score = 61.2 bits (147), Expect = 3e-10
Identities = 44/173 (25%), Positives = 80/173 (45%), Gaps = 17/173 (9%)
Query: 19 INSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFNDS 78
I+ LPD ++ ILS +P+++ T +LS RW LW + C++ + D ++ SF D
Sbjct: 2 ISQLPDPLICHILSHLPIKDLVTTRVLSTRWRSLWLWLPCLELNSLYFPDFNAFVSFGDK 61
Query: 79 MSSILLSRYHNINKWINFVVQHGL-----KYLRLGLHISVEDDDDDAYVD------IPIL 127
+R INK+ ++ + + YL + +V+ +V I +
Sbjct: 62 FFD--SNRVSCINKFKLYIYGYDVGVDDPSYLTSWIDAAVKCKIQHLHVQCLPAKYIYEM 119
Query: 128 PVSILTCRTLVSLDLWRVLI----FLLLGLDFHHSMPFIWTIRSSNTFQILCC 176
P+S+ C TLV L L RV++ F+ L + ++W +N + + C
Sbjct: 120 PLSLYICETLVYLKLCRVMLDDAEFVSLPCLKTIHLEYVWFPNEANLERFVSC 172
>At5g02700 putative protein
Length = 456
Score = 61.2 bits (147), Expect = 3e-10
Identities = 39/111 (35%), Positives = 60/111 (53%), Gaps = 12/111 (10%)
Query: 2 RRRRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF 61
RR +RI + A D IN +PD+IL ILS IP + A TS+LS+RW H+W T C+D
Sbjct: 17 RRIQRIIDGA-----DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDI 71
Query: 62 T--DIILNDTDSTYSFNDSMSSILLSRYHN-----INKWINFVVQHGLKYL 105
T +N T ++Y+ S L+ ++ ++ WI F + ++ L
Sbjct: 72 TLKHGAMNQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNL 122
>At5g53840 putative protein
Length = 444
Score = 60.8 bits (146), Expect = 4e-10
Identities = 38/143 (26%), Positives = 65/143 (44%), Gaps = 23/143 (16%)
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFN 76
++++ LPD ++ ILS + ++A TSILS RW +LW+ +DF L SF
Sbjct: 18 ERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSRELRSFSEFVSFA 77
Query: 77 DSMSSILLSRY--------------HNINKWINFVVQHGLKYLRLGLHISVEDDDDDAYV 122
S + Y + + WI+ V +H ++++ + +
Sbjct: 78 GSFFYLHKDSYIQKLRVCIYDLAGNYYLTSWIDLVTRHRIQHIDISVF---------TCS 128
Query: 123 DIPILPVSILTCRTLVSLDLWRV 145
++P+S+ TC TLV L L RV
Sbjct: 129 GFGVIPLSLYTCDTLVHLKLSRV 151
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.327 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,092
Number of Sequences: 26719
Number of extensions: 179316
Number of successful extensions: 1103
Number of sequences better than 10.0: 243
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 271
length of query: 188
length of database: 11,318,596
effective HSP length: 93
effective length of query: 95
effective length of database: 8,833,729
effective search space: 839204255
effective search space used: 839204255
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149131.10