BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.9 + phase: 0 /pseudo
(1214 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 553 e-157
At2g31080 putative non-LTR retroelement reverse transcriptase 535 e-152
At4g15590 reverse transcriptase like protein 521 e-148
At2g45230 putative non-LTR retroelement reverse transcriptase 471 e-133
At2g25550 putative non-LTR retroelement reverse transcriptase 467 e-131
At4g10830 putative protein 466 e-131
At2g31520 putative non-LTR retroelement reverse transcriptase 466 e-131
At4g09710 RNA-directed DNA polymerase -like protein 456 e-128
At2g05200 putative non-LTR retroelement reverse transcriptase 435 e-122
At2g17910 putative non-LTR retroelement reverse transcriptase 432 e-121
At2g01840 putative non-LTR retroelement reverse transcriptase 425 e-119
At3g31420 hypothetical protein 419 e-117
At2g11240 pseudogene 418 e-116
At1g47910 reverse transcriptase, putative 408 e-113
At1g24640 hypothetical protein 407 e-113
At3g45550 putative protein 367 e-101
At1g25430 hypothetical protein 350 3e-96
At2g41580 putative non-LTR retroelement reverse transcriptase 349 5e-96
At3g25485 unknown protein 342 1e-93
At1g31100 hypothetical protein 336 4e-92
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 553 bits (1426), Expect = e-157
Identities = 317/842 (37%), Positives = 466/842 (54%), Gaps = 55/842 (6%)
Query: 4 TITGPWMLIGDFNETHLPSEQRGGTFH-HNRAATFSNFMNNCNLLDLTTTGGRFTWHKNN 62
++ GP ++ GDFN E+ GG + + F ++N+ +L+DL G +FTW +
Sbjct: 692 SMDGPVVIGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGR 751
Query: 63 NGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGG-LPLTRGPRPFRF 121
++K+LDR + RL + EA V L L SDH PL ++ + RG RPFRF
Sbjct: 752 EERFFVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRF 811
Query: 122 EAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKG 181
EAAW+ H + ++ SW+ P A LK
Sbjct: 812 EAAWLSHPGFKELLLTSWNKDISTPEA------------------------------LK- 840
Query: 182 VQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVI 241
VQ L+ S E+EL +++ +L QEE++W QKSRE+W GD+NT FFH T+I
Sbjct: 841 VQELLDLHQSDDLLKKEEELLKDFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTII 900
Query: 242 RRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFC-------GSQIPYSRFFNEGRHP 294
RR+ N+I LQ +G S++ L+ A+ Y+K+ + Q+P F
Sbjct: 901 RRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGF------T 954
Query: 295 ALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSA 354
AL + +SLT P + EV A+ SM YKAPGPDGF +F++Q W +VG+ V V
Sbjct: 955 ALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDF 1014
Query: 355 FLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIG 414
F +G F ++ L+ LI K+ P FRPISLCN L+K ITKV+V RL+ +N LIG
Sbjct: 1015 FSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIG 1074
Query: 415 PYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLD 474
P Q+SF+PGR + DN +++QE++H M+R K KG++ KLDLEKA+D + WD L L
Sbjct: 1075 PAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKA 1134
Query: 475 FGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAI 534
G P V+ IM CV + LLWNG K FKP GLRQGDPLSPYLF+LC+E+L I
Sbjct: 1135 AGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLI 1194
Query: 535 QDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKIN 594
+ ++ W+PI I GP++SH+ FADD++LF +A Q++ + + ++F ASG K++
Sbjct: 1195 ESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVS 1254
Query: 595 ISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTR 654
+ KS+ Y+S ++ SG+++T LGKYLG P+LQ R + F ++++ +R
Sbjct: 1255 LEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSR 1314
Query: 655 LASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKG 713
LA WK R+L+ GRLTL +VL++I + M LPQ+ D +D+ +R FLW + K
Sbjct: 1315 LAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKK 1374
Query: 714 IHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSL 773
HLV W + P+ GGLGIRSA N L+ K+ W ++ + LW ++ KY G +
Sbjct: 1375 QHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVG-DV 1433
Query: 774 LEAN---VNSNSSPSWFSI-IRAKDILKTGYSWRAGAGTS-SFWFSNWSSHGYLG--SLV 826
+ N SN S +W S+ + +D++ W G G FW W S + S+V
Sbjct: 1434 HDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIV 1493
Query: 827 PI 828
P+
Sbjct: 1494 PL 1495
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 535 bits (1378), Expect = e-152
Identities = 303/821 (36%), Positives = 456/821 (54%), Gaps = 53/821 (6%)
Query: 5 ITGPWMLIGDFNETHLPSEQRGGTFHHNR-AATFSNFMNNCNLLDLTTTGGRFTWHKNNN 63
+ GP ++ GDFN E+ GG + + F +++N +L+DL G +FTW +
Sbjct: 29 LEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDWINELSLIDLGFKGNKFTWRRGRQ 88
Query: 64 GIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEA 123
+++K+LDR RL + EA V L + SDH PL ++ L +
Sbjct: 89 ESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDHAPLYVQLEPLQQRK--------- 139
Query: 124 AWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQ 183
R W N +VFG+I RK ++ +K VQ
Sbjct: 140 ------------LRKW---------------------NREVFGDIHVRKEKLVADIKEVQ 166
Query: 184 SYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRR 243
L V S E+ L E + +L QEE LW+QKSRE++++LGD+NT FFH T+IRR
Sbjct: 167 DLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRR 226
Query: 244 KWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSR-FFNEGRHPALDDTGKT 302
+ N+I L+ + +D L+ AL Y+K+ + + R G ++ + K
Sbjct: 227 RRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKA 286
Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 362
+L TK EV +A+ SM +KAPGPDG+ +F++Q W VG V V F TG
Sbjct: 287 ALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPA 346
Query: 363 AISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLP 422
+ ++ L+ LI K+ P + FRP+SLCN L+KIITK++V RL+ ++ LIGP Q+SF+P
Sbjct: 347 STNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIP 406
Query: 423 GRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIV 482
GR + DN +++QE +H M+R K +KG++ KLDLEKA+D V WDFL L G +
Sbjct: 407 GRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWT 466
Query: 483 KLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGS 542
IM V+ + S+LWNG + F P GLRQGDPLSPYLF+LC+E+L I+ +V +
Sbjct: 467 SRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKRE 526
Query: 543 WEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYY 602
W+PI + G ++SH+ FADD++LF +A +Q++ I + +RF ASG K+++ KS+ ++
Sbjct: 527 WKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFF 586
Query: 603 SSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRL 662
S ++ SGI T LGKYLG P+LQ R + F +LE++ RLA WK R
Sbjct: 587 SHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRS 646
Query: 663 LNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKT 721
L+ GR+TL +VLS+IP + M LP + D++D+ +R FLW + K HL++W+
Sbjct: 647 LSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRK 706
Query: 722 ITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSG----TSLLEAN 777
I +PK+ GG+G+RSARD N L+ K+ W ++Q LW ++ KKY G TS L+
Sbjct: 707 ICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQ 766
Query: 778 VNSNSSPSWFSI-IRAKDILKTGYSWRAGAG-TSSFWFSNW 816
+S +W S+ + ++++ G W G G T FW W
Sbjct: 767 PRWSS--TWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW 805
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 521 bits (1342), Expect = e-148
Identities = 283/718 (39%), Positives = 418/718 (57%), Gaps = 38/718 (5%)
Query: 53 GGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPL 112
G RFTW + ++K+LDR + RL + EA +LC + +
Sbjct: 5 GNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEA---LLCPAQN-------------V 48
Query: 113 TRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRK 172
RPFRFEAAW+ H + ++ SW T P A L ++ +N +VFGNI RK
Sbjct: 49 DARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVA-LNRLRWQLKKWNKEVFGNIHVRK 107
Query: 173 SRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNT 232
+V LK VQ LE V + + E L E++ +L QEE LW+QKSRE+ + LGD+NT
Sbjct: 108 EKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNT 167
Query: 233 AFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSR--FFNE 290
FFH TVIRR+ N+I L+ ++ L++ A+ Y++K + + R E
Sbjct: 168 TFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLPTE 227
Query: 291 GRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHL 350
G P L K +L P T+ EV A+ SM +KAPGPDG+ +F++Q W VG+ V
Sbjct: 228 G-FPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKF 286
Query: 351 VRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLN 410
V F +G + ++ L+ L+ K+ P FRP+SLCN L+KIITK++V RL+ ++
Sbjct: 287 VMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVIS 346
Query: 411 NLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNS 470
LIGP Q+SF+PGR + DN +++QE +H M+R K +KG++ KLDLEKA+D + WDFL
Sbjct: 347 KLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAE 406
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
L G + +K IM CV+ SLLWNG K F P GLRQGDP+SPYLF+LC+E+L
Sbjct: 407 TLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERL 466
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
I+ AV +G W+ I I GP++SH+ FADD++LF +A +Q
Sbjct: 467 CHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQ---------------- 510
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
K+++ KS+ ++S+ +TA +GI ST LGKYLG P+LQ R + F +LE+
Sbjct: 511 -KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLER 569
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS- 709
+ +RL+ WK+R L+ GR+TL +VL +IP + M LP ++ + +D+ +RNFLW +
Sbjct: 570 VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629
Query: 710 NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKY 767
+ HL++WK + RPK+ GGLG+R+++D N LL K+ W ++ LW +L +KY
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKY 687
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 471 bits (1213), Expect = e-133
Identities = 275/821 (33%), Positives = 420/821 (50%), Gaps = 19/821 (2%)
Query: 6 TGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTTGGRFTWHKNNNG 64
+GPWML GDFNE PSE+ GG + F +N+C L ++ +G +F+W+ N N
Sbjct: 128 SGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRND 187
Query: 65 IRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAA 124
++ +LDR +AN W FP+A L ++ SDH+PL+ G R F+++
Sbjct: 188 -ELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVG-DNWRKWAGFKYDKR 245
Query: 125 WIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQS 184
W+ + +++ WS + A + ME ++ K R++ +Q
Sbjct: 246 WVQREGFKDLLCNFWSQQSTKTNALM---MEKIASCRREISKWKRVSKPSSAVRIQELQF 302
Query: 185 YLERV------DSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
L+ D L+KEL EYN+ EE W +KSR W++ GD+NT +FHA
Sbjct: 303 KLDAATKQIPFDRRELARLKKELSQEYNN----EEQFWQEKSRIMWMRNGDRNTKYFHAA 358
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
T RR N+I KL G + L A YFKK F + Y+ E P + D
Sbjct: 359 TKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSD 418
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
+L +PITK+EV A S+ P+K PGPDG + ++Q+W +GD + +V++ F +G
Sbjct: 419 QMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSG 478
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+ ++ T I LIPKI DFRPISLCN +YK+I K++ +RL+ L +LI Q+
Sbjct: 479 SIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQA 538
Query: 419 SFLPGRGTADNSIILQEILHFM-KRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+ GR +DN +I E+LH + +K + ++A K D+ KA+D V W FL + GF
Sbjct: 539 AFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGF 598
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
D ++LIM CV S Y +L NG P+ GLRQGDPLSPYLF++C E L +Q A
Sbjct: 599 ADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSA 658
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+ + + P ISHLLFADD + + K L I + + +S ASG ++N K
Sbjct: 659 EQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S Y+ + + GI+ G YLG P K + +++ +++ ++
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLG 778
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHL 716
W++ L+ G+ L +V +PTY M +P+ IC I+ F WK +G+H
Sbjct: 779 WQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHW 838
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
W ++RPK++GGLG + NI LLGK +W M+ + L + +Y S + L A
Sbjct: 839 KAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNA 898
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNW 816
+ S S +W SI A+ ++K G G G T + W W
Sbjct: 899 PLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPW 939
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 467 bits (1202), Expect = e-131
Identities = 285/816 (34%), Positives = 415/816 (49%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTW- 58
I+D W+L+GDFNE +E+ GG F N +++C++ D+ + G RF+W
Sbjct: 504 ISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV 563
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++ + ++ LDR N W +FP A +E L SDH P+L+ F R +
Sbjct: 564 GERHTHTVKCC---LDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNE-SFPRRSK 619
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHN---PTASLIKVMENSII-FNHDVFGNIFQRKS 173
FRF+ ID + +V+ SW T+ ++ P I ++ H N QR
Sbjct: 620 LFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIK 679
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L RVD L +LQ+ EE+ W QKSR QW+K GD+NT
Sbjct: 680 KLQSSLNRAMESTRRVDRQ----LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 735
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
+FHA T R N+++ + G + + A +F F + I S
Sbjct: 736 YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 795
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
+ +T LT + E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 796 STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKK 855
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T P+I++T I +IPKI +P T D+RPI+LCN LYK+I+K LV+RL+ LN+++
Sbjct: 856 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 915
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR K Y+A K D+ KA+D V WDFL + +
Sbjct: 916 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 975
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + + IM V S +YS+L NG+ PT G+RQGDPLSPYLFILC + LS
Sbjct: 976 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 1035
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I G + I N P I+HL FADD L F +A Q + ++FD + SG K
Sbjct: 1036 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 1095
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+ KS + S + L I I + GKYLG P GR K+ F +I+++++
Sbjct: 1096 INVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 1155
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R ++W R L+ G+ + SV +P Y M LP+ I I+ NF W K SN
Sbjct: 1156 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 1215
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+GI V WK + K GGLG R N LL K W ++Q N L+ ++ +Y
Sbjct: 1216 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1275
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A V S W S++ +LK G G G
Sbjct: 1276 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDG 1311
>At4g10830 putative protein
Length = 1294
Score = 466 bits (1199), Expect = e-131
Identities = 287/816 (35%), Positives = 425/816 (51%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTTGGRFTW- 58
++ T PW+LIGDFNE +E+ GG F N ++ C+L D+ + G RF+W
Sbjct: 484 LSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV 543
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++++ ++ LDR N + FP A +E L SDH PL L TR R
Sbjct: 544 GERHSHTVKCC---LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTE-TRKMR 599
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASL---IKVMENSII-FNHDVFGNIFQRKS 173
PFRF+ ++ + VK W+ + L ++ ++ H N R +
Sbjct: 600 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRIN 659
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L S + R + + +++EL Y EE W QKSR QW+K GD+NT
Sbjct: 660 QLQAALDKAMSSVNRTERRTISHIQRELTVAYR----DEERYWQQKSRNQWMKEGDRNTE 715
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
FFHA T R N++ ++ G+ + A ++F K + + P S G
Sbjct: 716 FFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFK 775
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
P + + LT ++ E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 776 PIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKI 835
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T + +I++T I +IPKI +P T D+RPI+LCN LYKII+K LV RL+ L+ ++
Sbjct: 836 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 895
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR + Y+A K D+ KA+D V W+FL + +
Sbjct: 896 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 955
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + +K IM V S NYS+L NG +P G+RQGDPLSPYLFILC + L+
Sbjct: 956 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1015
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I++ V +G I I N P ++HL FADD L F ++ Q + ++FD + SG K
Sbjct: 1016 LIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQK 1075
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+SKS + S N L I GIQS GKYLG P GR KR FN+I+E+++
Sbjct: 1076 INMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVK 1135
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R +SW + L+ G+ + SV ++P Y M LP NI I+ NF W K +
Sbjct: 1136 KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKK 1195
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+ I + WK + K GGLG R N LL K VW M+ + N L+ ++ +Y
Sbjct: 1196 REIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRED 1255
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A S W S++ D++K G + G G
Sbjct: 1256 SILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDG 1291
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 466 bits (1199), Expect = e-131
Identities = 285/816 (34%), Positives = 414/816 (49%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTW- 58
I+D W+L+GDFNE +E+ GG F N +++C++ D+ + G RF+W
Sbjct: 278 ISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV 337
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++ + ++ LDR N W +FP A E L SDH P+L+ F R +
Sbjct: 338 GERHTHTVKCC---LDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNE-SFPRRSK 393
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHN---PTASLIKVMENSII-FNHDVFGNIFQRKS 173
FRF+ ID + +V+ SW T+ ++ P I ++ H N QR
Sbjct: 394 LFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIK 453
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L RVD L +LQ+ EE+ W QKSR QW+K GD+NT
Sbjct: 454 KLQSSLNRAMESTRRVDRQ----LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 509
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
+FHA T R N+++ + G + + A +F F + I S
Sbjct: 510 YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 569
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
+ +T LT + E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 570 STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKK 629
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T P+I++T I +IPKI +P T D+RPI+LCN LYK+I+K LV+RL+ LN+++
Sbjct: 630 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 689
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR K Y+A K D+ KA+D V WDFL + +
Sbjct: 690 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 749
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + + IM V S +YS+L NG+ PT G+RQGDPLSPYLFILC + LS
Sbjct: 750 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 809
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I G + I N P I+HL FADD L F +A Q + ++FD + SG K
Sbjct: 810 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 869
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+ KS + S + L I I + GKYLG P GR K+ F +I+++++
Sbjct: 870 INVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 929
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R ++W R L+ G+ + SV +P Y M LP+ I I+ NF W K SN
Sbjct: 930 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 989
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+GI V WK + K GGLG R N LL K W ++Q N L+ ++ +Y
Sbjct: 990 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1049
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A V S W S++ +LK G G G
Sbjct: 1050 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDG 1085
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 456 bits (1174), Expect = e-128
Identities = 278/816 (34%), Positives = 413/816 (50%), Gaps = 20/816 (2%)
Query: 9 WMLIGDFNETHLPSEQRGGTFH-HNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W+L GDFN+ SE++GG F +F++ L D+ TG +W +
Sbjct: 75 WLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSW-RGTRYSHF 133
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWID 127
+ +LDR + N W FP + E L SDH PL+ FG PL R +PFRF+ +
Sbjct: 134 IKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRS-KPFRFDRRLRE 192
Query: 128 HYDYGNVVKRSWSTHTHNPTASLIKVMENSII-FNHDVFGNIFQRKSRVEWRLKGVQSYL 186
+ +VK W + I SII + + N + + + L+ S
Sbjct: 193 KEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALS-A 251
Query: 187 ERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWN 246
+ D + +EL+ Y QEE+ W Q SR QW+ GD+N +FHA T RR N
Sbjct: 252 DIPDPSLIGSITQELEAAYR----QEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLN 307
Query: 247 KIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTS 306
+ ++ +G + + YF+ F S + E P + L
Sbjct: 308 NLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIK 367
Query: 307 PITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISN 366
+ E+ AL S+ KAPGPDGF FF YW I+ DV +RS F+ P ++
Sbjct: 368 ISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNE 427
Query: 367 TLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGT 426
T + LIPKI +P D+RPI+LCN YKI+ K+L RL+P+L+ LI +QS+F+PGR
Sbjct: 428 THVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAI 487
Query: 427 ADNSIILQEILHFMKRSKRKKGY-VAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLI 485
ADN +I EILHF++ S KK +A K D+ KA+D + W+FL L+ GF D ++ +
Sbjct: 488 ADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWV 547
Query: 486 MHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEP 545
M CV + +YS L NG+ P+ GLRQGDPLSPYLFILC E LS + A +G
Sbjct: 548 MQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVG 607
Query: 546 IHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSG 605
I + PQ++HLLFADD + F K + ++N+ ++ ASG IN++KS +SS
Sbjct: 608 IRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSK 667
Query: 606 TPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNR 665
TP + I + +GKYLG P GR KR F+ I+++++ R SW R L+
Sbjct: 668 TPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSS 727
Query: 666 TGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNK-GIHLVNWKTITR 724
G+ L +VLS++P+Y M LP ++C I F W +K + V+W +T
Sbjct: 728 AGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTL 787
Query: 725 PKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVN-SNSS 783
P + GGLG R + KL W +++ + L +L KY + +S ++ + + S +S
Sbjct: 788 PINEGGLGFRE-------IEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFAS 840
Query: 784 PSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNWSS 818
W I+ +D+L+ G W G G S + W W S
Sbjct: 841 HGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLS 876
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 435 bits (1118), Expect = e-122
Identities = 279/823 (33%), Positives = 405/823 (48%), Gaps = 42/823 (5%)
Query: 16 NETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIR---ILSKK 71
NE SE+RGG + F +F++ L DL +G F+W G+R + ++
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWR----GMRYDWFVRQR 91
Query: 72 LDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDY 131
LDR M+N W SFP E L SDH PL++ + R + FRF+ D+
Sbjct: 92 LDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQ-FRFDNRLRDNDVV 150
Query: 132 GNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEW-RLKGVQSYLERVD 190
+++ +W T+ AS++ M R+ + W RL+ + S E ++
Sbjct: 151 NALIQETW---TNAGDASVLTKMNQC-------------RREIINWTRLQNLNS-AELIE 193
Query: 191 SYRHTLLEKELQDEYN------------HILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
+ L E D N H EE W Q+SR W+ GD+NT +FHA
Sbjct: 194 KTQKALEEALTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAV 253
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
T RR N++ ++ NG++ + + + + YF++ F +E P +
Sbjct: 254 TRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQ 313
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
LT +EV A+ S+ KAPGPDGF F+ YWHI+ DV +R F +
Sbjct: 314 GDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSK 373
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+F ++ T I LIPK P D+RPI+LCN YKI+ K++ R++ L LI QS
Sbjct: 374 NFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQS 433
Query: 419 SFLPGRGTADNSIILQEILHFMKRSKRKKG-YVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+PGR +DN +I E+LHF++ S KK +A K D+ KA+D V WDFL L FGF
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
I + ++ CV+S +YS L NG PT GLRQGDPLSP LFILC E LS A
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRA 553
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+ + +GP+++HLLFADD + F+K+ ++ + R+ +ASG IN K
Sbjct: 554 QRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S +SS TP + I I+ GKYLG P GR KR F I++K++ + S
Sbjct: 614 SSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHS 673
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNN-KGIHL 716
W +R L++ G+ + +VL+++P Y M LP +C I F W + +
Sbjct: 674 WASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSW 733
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
V W +T PK+ GGLG R N LL KL W ++ S L +L KY +S +E
Sbjct: 734 VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC 793
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNWSS 818
+ S S W SII ++ILK G W G S W W S
Sbjct: 794 KLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLS 836
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 432 bits (1110), Expect = e-121
Identities = 272/821 (33%), Positives = 408/821 (49%), Gaps = 17/821 (2%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W LIGDFN+ E+ GG + F + + NC++ +L +TG FTW N N +
Sbjct: 109 WCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND-QW 167
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ KLDR N W FP A L + SDH P+L++F L RG FR++
Sbjct: 168 VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ--FRYDKRLD 225
Query: 127 DHYDYGNVVKRSW----STHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGV 182
D V+ RSW S TH+ SLI+ ++ H N R R+ L
Sbjct: 226 DDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKDLDAE 285
Query: 183 QSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIR 242
+S ++ + + ++D+ + EE+ W QKSR++W+ GDKNT FFHA
Sbjct: 286 KSI--QIPCWPRI---EYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSE 340
Query: 243 RKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKT 302
R N++ L N + ++ + A +F+ F + I EG +
Sbjct: 341 RLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNH 400
Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 362
+L +T+ EV+ A+ S+ APGPDGF +FF+Q+W +V + + F TG
Sbjct: 401 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 460
Query: 363 AISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLP 422
++T I LIPKI SP D RPISLC+ LYKII+K+L RL+ L ++ QS+F+P
Sbjct: 461 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 520
Query: 423 GRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDII 481
R +DN ++ E++H ++ + R K ++AFK D+ KA+D V W FL + + GF +
Sbjct: 521 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 580
Query: 482 VKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQG 541
+ IM+CV+S +YS+L NG PT G+RQGDPLSP LF+LC E L + A G
Sbjct: 581 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 640
Query: 542 SWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAY 601
I + ++HLLFADD LL KA + + + ++ + SG IN++KS
Sbjct: 641 KITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAIT 700
Query: 602 YSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNR 661
+ + + + SGI GKYLG P KR F FI EK+Q+RL W +
Sbjct: 701 FGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 760
Query: 662 LLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNK-GIHLVNWK 720
L++ G+ L S+ +P Y M LP+N+C + +F W K IH ++W+
Sbjct: 761 TLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQ 820
Query: 721 TITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNS 780
+T PK GG G + + N LL K W ++Q L+ + +Y S + L A S
Sbjct: 821 RLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGS 880
Query: 781 NSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNWSSHG 820
S +W SI+ +++L G G G +F W W G
Sbjct: 881 RPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG 921
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 425 bits (1093), Expect = e-119
Identities = 264/827 (31%), Positives = 402/827 (47%), Gaps = 49/827 (5%)
Query: 6 TGPWMLIGDFNETHLPSEQRGGTFHH-NRAATFSNFMNNCNLLDLTTTGGRFTW-HKNNN 63
+GPWM+ GDFNE +E++GG F+N +N CN+ DL + G ++W K N
Sbjct: 490 SGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQN 549
Query: 64 GIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEA 123
+ LDR N DW+ SFP E L SDH P+++ T+ + FR++
Sbjct: 550 --ETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQ-FRYDR 606
Query: 124 AWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQ 183
D+ + V+R W+ + + + R+ +W+ +
Sbjct: 607 RHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCC-------------RQELAKWKRRTKT 653
Query: 184 SYLERVDSYR---------HTLLEK---ELQDEYNHILFQEEMLWYQKSREQWVKLGDKN 231
+ E++++ + HTL + L+ + N EE+ W+ KSR +W+ LGD+N
Sbjct: 654 NTAEKIETLKYRVDAAERDHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRN 713
Query: 232 TAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEG 291
T FF+A T +R+ N+I + GI + + + A YF F +Q G
Sbjct: 714 TMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISG 773
Query: 292 RHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLV 351
P + + L +T +EV A+ ++ +APG DGF F+ W ++G+DV +V
Sbjct: 774 IAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMV 833
Query: 352 RSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNN 411
R F + D I+ T I LIPKI P D+RPISLC YKII+K+L+ RL+ L +
Sbjct: 834 RHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGD 893
Query: 412 LIGPYQSSFLPGRGTADNSIILQEILHFMK-RSKRKKGYVAFKLDLEKAFDNVNWDFLNS 470
+I Q++F+PG+ +DN ++ E+LH +K R + + GYVA K D+ KA+D V W+FL
Sbjct: 894 VISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEK 953
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
++ GF VK IM CV+S +Y +L NG+ P+ G+RQGDPLSPYLF+ C E L
Sbjct: 954 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
S ++ A + + I D ISHLLFADD L F +A + ++ + +F ++ ASG
Sbjct: 1014 SNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
KIN +KS + P + L + GI + GKYLG P GR K F +I+ K
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTK 1133
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSN 710
++ R W L+ G+ + ++ +P Y M LP IC+ I+ F W N
Sbjct: 1134 VKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGKEN 1193
Query: 711 NKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSG 770
G LG + N LL K W ++ + L L Y
Sbjct: 1194 E-----------------GDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPN 1236
Query: 771 TSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNW 816
T+ L AN ++S W SI K +L+ G R G G T+ W W
Sbjct: 1237 TTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPW 1283
>At3g31420 hypothetical protein
Length = 1491
Score = 419 bits (1077), Expect = e-117
Identities = 265/828 (32%), Positives = 412/828 (49%), Gaps = 45/828 (5%)
Query: 1 INDTITGP-WMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTW 58
+N T G W ++GDFNE E+RGG R F N + CN DL + G RF+W
Sbjct: 303 LNTTRQGTAWFIMGDFNEILSNREKRGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSW 362
Query: 59 HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRP 118
G ++ LDR MAN +W FPE+ + SDH PL+ R
Sbjct: 363 -AGKRGDHHVTCSLDRTMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQKEERRGF- 420
Query: 119 FRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRV--E 176
F +++ + VV W H N + + ++ +++ +RV E
Sbjct: 421 FSYDSRLTHKEGFKQVVLNQW--HRRNGSFEGDSSLNRKLVECRQAISR-WKKNNRVNAE 477
Query: 177 WRLKGVQSYLER-VDSYRHTLLEK-ELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAF 234
R+K ++ L+R + + T E+ +++ + N EE+ W KSR +W+ GD+NT +
Sbjct: 478 ERIKIIRHKLDRAIATGTATPRERRQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRY 537
Query: 235 FHAQTVIRRKWNKIHKLQLPNG-ISTSDSNILQEEALKYFKKFFCGSQIPYSRFFN--EG 291
FH+ T RR N++ +Q +G I D NI + A+ YF + + R+ + +G
Sbjct: 538 FHSTTKTRRCRNRLLSVQDSDGDICRGDENIAKV-AINYFDDLYKSTPNTSLRYADVFQG 596
Query: 292 RHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLV 351
+ D L P+T+ E+ ++ S+ P + P PDGF F++Q+W + V V
Sbjct: 597 FQQKITDEINEDLIRPVTELEIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEV 656
Query: 352 RSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNN 411
F D ++T + LIPK+++P T FRPI+LCN YKII+K+LV+RL+ L
Sbjct: 657 TRFFERSELDERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGG 716
Query: 412 LIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRK-KGYVAFKLDLEKAFDNVNWDFLNS 470
I Q++F+PGR +N+II E+ + +K KR+ Y+A K D+ KA+D + WDFL
Sbjct: 717 AITENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEE 776
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
+ GF ++ IM CV+ +S+L NG+ KP G+R GDPLSPYLFILC E L
Sbjct: 777 TMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVL 836
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
S I+ A + + I + GP ISHLLFADD + FT
Sbjct: 837 SHMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFT---------------------- 874
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
++ R+ + P+ K + + GI + GKYLG P + K+ FN+I+EK
Sbjct: 875 ----LANQRSCTAIKEPDTK-RRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEK 929
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWK-GS 709
++ + W + L++ G+ L +V +P Y M I L + +C+ ID F W G+
Sbjct: 930 VKDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGN 989
Query: 710 NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSS 769
KG+H WK ++ PK GGLG + + N+ LLGK W ++Q N L +L +Y
Sbjct: 990 ETKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFP 1049
Query: 770 GTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGT-SSFWFSNW 816
T+++ A +S W SI+ +++LK G G G+ + W W
Sbjct: 1050 ETNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPW 1097
>At2g11240 pseudogene
Length = 1044
Score = 418 bits (1074), Expect = e-116
Identities = 257/794 (32%), Positives = 396/794 (49%), Gaps = 43/794 (5%)
Query: 41 MNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDH 100
M C+L DL +G +W + ++ +LDR ++N W +P + LC SDH
Sbjct: 1 MAECDLYDLRHSGNFLSWRGKRHD-HVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDH 59
Query: 101 NPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIF 160
PLL F L + FR++ ++ + +V+ +W+ + + I I
Sbjct: 60 RPLLTHFD-LSKKKKKGVFRYDRRLKNNDEVTALVQEAWNLYDTDIVEEKISRCRLEI-- 116
Query: 161 NHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQ--------- 211
V+W QS + ++ R L E ++N L
Sbjct: 117 --------------VKWSRAKQQSSQKLIEENRQKLEEAMSSQDHNQELLSTINTNLLLA 162
Query: 212 ---EEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEE 268
EE W Q+SR+ W+ LGDKN+ +FHA T R NK ++ +G+ + +
Sbjct: 163 YKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNV 222
Query: 269 ALKYFKKFFCGSQIPYSRFFNEGRHPA-LDDTGKTSLTSPITKKEVFAALNSMKPYKAPG 327
+YF+K F NEG A + + K ++ +E+ +A S+ KAPG
Sbjct: 223 ISEYFQKLFSA---------NEGARAATIKEAIKPFISPEQNPEEIKSACFSIHADKAPG 273
Query: 328 PDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPI 387
PDGF FF+ W VG ++ ++S F + P I+ T I LIPKI S D+RPI
Sbjct: 274 PDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPI 333
Query: 388 SLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKR-SKRK 446
+LC YKII+K+L RL+P L +I QS+F+P R + DN +I E LH++K K
Sbjct: 334 ALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEK 393
Query: 447 KGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPF 506
+ ++A K ++ KA+D + WDF+ + + GF + I+ C+++ +YS L NG+
Sbjct: 394 RCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAV 453
Query: 507 KPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLL 566
P GLRQGDPLSP+LFI+C E LS + A L GS + + P+++HLLFADD +
Sbjct: 454 TPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIF 513
Query: 567 FTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTL 626
F ++ + + ++ ASG IN SKS +S TP+ I GIQ L
Sbjct: 514 FCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGL 573
Query: 627 GKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQI 686
GKYLG P + GR KR FN I+++++ R SW +R L+ G+ T+ SVL+++PTY M
Sbjct: 574 GKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSC 633
Query: 687 NWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLG 745
L ++C I +F W S + K + + W + + K GGLG + + N LL
Sbjct: 634 FKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLA 693
Query: 746 KLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAG 805
KL W +VQS + + V +L KY +S L+ +V + SS W I KD++K+ G
Sbjct: 694 KLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIG 753
Query: 806 AGTSSF-WFSNWSS 818
+G + W W S
Sbjct: 754 SGLDTLVWNEPWLS 767
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 408 bits (1048), Expect = e-113
Identities = 267/814 (32%), Positives = 400/814 (48%), Gaps = 56/814 (6%)
Query: 96 LHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVME 155
L SDH+P++ + RG + FRF+ WI + + W+ + ++ +
Sbjct: 2 LASDHSPVIATIAD-KIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLT 60
Query: 156 NSIIFNHDVFGNIFQRKSRVEWR-------------LKGVQSYLERVDSYRH---TLLEK 199
N R++ +WR LK +R D T L
Sbjct: 61 NC-------------RRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTL 107
Query: 200 ELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGIST 259
L++ Y EE WYQKSR W+KLGD N+ FFHA T RR N+I L NGI +
Sbjct: 108 RLKEAYR----DEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWS 163
Query: 260 SDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPA---LDDTGKTSLTSPITKKEVFAA 316
+ + +Q A+ YF+ F + + F+E + D LT+ T+ EV AA
Sbjct: 164 IEDDDIQNIAVSYFQNLFTTAN---PQVFDEALGEVQVLITDRINDLLTADATECEVRAA 220
Query: 317 LNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKID 376
L + P KAPGPDG +FF++ W I+ D+ LV S G FD ++ T I LIPK +
Sbjct: 221 LFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTE 280
Query: 377 SPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEI 436
P + RPISLCN YK+I+K+L RL+ L NLI QS+F+ GR +DN +I QE+
Sbjct: 281 RPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEM 340
Query: 437 LHFMK-RSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYS 495
H ++ S K ++A K D+ KA+D V W+F+ + L GF + + IM C+++ Y
Sbjct: 341 FHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYK 400
Query: 496 LLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQI 555
+L NG P GLRQGDPLSPYLFILC E L I+ A Q I + P +
Sbjct: 401 VLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAV 460
Query: 556 SHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLT 615
SHLLFADD L F KA Q I + ++ SG +IN SKS + + ++
Sbjct: 461 SHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIK 520
Query: 616 AISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 675
I GI + +G YLG P G K F+F+ +++Q+R+ W + L++ G+ + SV
Sbjct: 521 LILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSV 580
Query: 676 LSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIR 734
+T+P Y M LP+ I + F W + +++G+H + W + KS GGLG R
Sbjct: 581 AATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFR 640
Query: 735 SARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKD 794
+ D N LL K +W ++ + + L+ + +Y ++ L++ + + S W S+I A+
Sbjct: 641 NVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARS 700
Query: 795 ILKTGYSWRAGAGTS-SFWFSNW------SSHGYLGSLVPIIDIHDIHLTVKDVLTSVGQ 847
++ G R G+G S S W W Y GS+V D L VK ++ S
Sbjct: 701 LVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIV------DPSLKVKSLIDSRSN 754
Query: 848 HTNV-LYTNLPQGIAETINNSHMRFNANIDDTLG 880
N+ L L + ++ N N++DTLG
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLG 788
>At1g24640 hypothetical protein
Length = 1270
Score = 407 bits (1045), Expect = e-113
Identities = 264/848 (31%), Positives = 407/848 (47%), Gaps = 27/848 (3%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNR-AATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W + GDFN+ E+ GG + F+ + C+L+++ G FTW G
Sbjct: 94 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTW-AGRRGDHW 152
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ +LDR N +W FP + L SDH P+L++ RG FRF+ ++
Sbjct: 153 IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ--FRFDKRFL 210
Query: 127 DHYDYGNVVKRSWSTHTHNPTASL---IKVMENSIIF-----NHDVFGNIFQRKSRVEWR 178
D + R+WS H S+ ++ S+ N + I Q ++ +E
Sbjct: 211 FKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKE 270
Query: 179 LKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
V +RV ++L+K+L Y +EE W QKSR++W++ G++N+ +FHA
Sbjct: 271 QSLVWPIFQRV-----SVLKKDLAKAYR----EEEAYWKQKSRQKWLRSGNRNSKYFHAA 321
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
R+ +I KL+ NG + E A YF F S + G P + +
Sbjct: 322 VKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSE 381
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
SL ++ +E+ A+ S+KP APGPDG +FF+ YW VG+ V V+ F G
Sbjct: 382 VMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADG 441
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+ T + LIPK P D RPISLC+ LYKII+K++ RL+P+L ++ QS
Sbjct: 442 IMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQS 501
Query: 419 SFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+ R DN ++ E++H +K R ++A K D+ KA+D V W +L S LL GF
Sbjct: 502 AFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGF 561
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
V IM CVSS YS+L N GLRQGDPLSP+LF+LC E L+ + A
Sbjct: 562 HLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKA 621
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+G+ E I +GP + HLLFADD L KA Q + + + A+G IN++K
Sbjct: 622 QWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNK 681
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S + + GI + G YLG P K +++ ++++ +L
Sbjct: 682 SSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDV 741
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHL 716
W R L++ G+ L SV +P + M LP C++++ +F W +++ IH
Sbjct: 742 WFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHW 801
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
+W+ + PK GGLG R + N LL K W ++ + L LL +Y T L+A
Sbjct: 802 QSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDA 861
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNW-SSHGYLGSLVPIIDIHDI 834
++ S W SI+ +++L G R G G S F W W +G+ + I+D+
Sbjct: 862 ALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNL-IYDV 920
Query: 835 HLTVKDVL 842
L VK +L
Sbjct: 921 TLKVKALL 928
>At3g45550 putative protein
Length = 851
Score = 367 bits (942), Expect = e-101
Identities = 207/541 (38%), Positives = 293/541 (53%), Gaps = 2/541 (0%)
Query: 269 ALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGP 328
A K+F F + I S ++ + + LT E+F A+ + KAPGP
Sbjct: 10 AQKFFTDIFTTNGIQVSPIDFADFPSSVTNIINSELTQDFRDSEIFEAICQIGDDKAPGP 69
Query: 329 DGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPIS 388
DG F+KQ W IVG+DV V+ F + H ++++T I +IPKI +P T D+RPI+
Sbjct: 70 DGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIA 129
Query: 389 LCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KK 447
LCN LYK+I+K +V+RL+ LN+++ Q++F+PGR DN +I EI+H +K KR K
Sbjct: 130 LCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSK 189
Query: 448 GYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFK 507
Y+A K D+ KA+D V WDFL + + FGF D + IM V S +YS+L NG+
Sbjct: 190 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYIS 249
Query: 508 PTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLF 567
PT G+RQGDPLSPYLFILC + LS I+ G + I N P I+HL FADD L F
Sbjct: 250 PTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFF 309
Query: 568 TKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLG 627
+A Q + ++FD + SG KIN+ KS + S L + I + G
Sbjct: 310 CQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGG 369
Query: 628 KYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQIN 687
KYLG P GR K+ FN+I+++++ R ASW + L+ G+ L SV +P Y M
Sbjct: 370 KYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCF 429
Query: 688 WLPQNICDSIDQTARNFLW-KGSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGK 746
LPQ I I+ NF W K SN +GI V WK + K GGLG R N LL K
Sbjct: 430 KLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAK 489
Query: 747 LVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGA 806
W ++Q N L+ ++ +Y S+++A S S W S++ +L+ G + G
Sbjct: 490 QAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGD 549
Query: 807 G 807
G
Sbjct: 550 G 550
>At1g25430 hypothetical protein
Length = 1213
Score = 350 bits (898), Expect = 3e-96
Identities = 255/843 (30%), Positives = 390/843 (46%), Gaps = 41/843 (4%)
Query: 8 PWMLIGDFNETHLPSEQRGGTFHHNRAAT--------FSNFMNNCNLLDLTTTGGRFTWH 59
PW+++GDFN+ P E H N + F + + L DL G FTW
Sbjct: 138 PWLVLGDFNQVLNPQE------HSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWW 191
Query: 60 KNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPF 119
N + ++KK+DR + N W FP + SDH + + + RPF
Sbjct: 192 -NKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSI-KAKRPF 249
Query: 120 RFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRL 179
+F + + D+ N+V+ +W T + +S+ +V + + S +E R
Sbjct: 250 KFFNYLLKNLDFLNLVRDNWFT-LNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRT 308
Query: 180 KGVQSYLERVDSYRHTL---------LEKELQDEYNHILFQEEMLWYQKSREQWVKLGDK 230
K +L + TL E E + +++ + EE + QKSR W GD
Sbjct: 309 KEAHDFL--IGCQDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSRISWFAEGDG 366
Query: 231 NTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNE 290
NT +FH R N I L NG + + YF PY N+
Sbjct: 367 NTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQND 426
Query: 291 GR---HPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDV 347
L S + +++ AAL S+ K+ GPDGF FF W IVG +V
Sbjct: 427 MNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEV 486
Query: 348 FHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRP 407
++ F +G + T I LIPKI +P DFRPIS NTLYK+I ++L RL+
Sbjct: 487 TDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQR 546
Query: 408 FLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSK-RKKGYVAFKLDLEKAFDNVNWD 466
L+ +I QS+FLPGR A+N ++ +++H S +G + K+DL+KAFD+V W+
Sbjct: 547 LLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGML--KVDLKKAFDSVRWE 604
Query: 467 FLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILC 526
F+ + L P+ + I C+S+ +++ NG FK T GLRQGDPLSPYLF+L
Sbjct: 605 FVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLA 664
Query: 527 MEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFS 586
ME S + G H ISHL+FADDV++F S L I D F+
Sbjct: 665 MEAFSNLLHSRYESGLIH-YHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFA 723
Query: 587 RASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNF 646
SGLK+N KS Y + N +N A G T +YLG P++ + + +++
Sbjct: 724 SWSGLKVNKDKSHLYLAG--LNQLESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEP 781
Query: 647 ILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW 706
+LEK+ R SW N+ L+ GR+ L +SV+ ++M LP+ I+ FLW
Sbjct: 782 LLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLW 841
Query: 707 KGS--NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLA 764
G+ KGI V+W + PKS GGLG+R + N L +L+W + + + LW +
Sbjct: 842 SGNIEQAKGIK-VSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQH 900
Query: 765 KKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNWSSHGYLG 823
+ S S + S +W ++ + + + G G + +W+ NW+S G L
Sbjct: 901 LHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLF 960
Query: 824 SLV 826
++
Sbjct: 961 RII 963
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 349 bits (896), Expect = 5e-96
Identities = 207/625 (33%), Positives = 316/625 (50%), Gaps = 7/625 (1%)
Query: 195 TLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLP 254
+LL+ L D Y +EE W KSR++W+ GDKN+ FF A R N + L
Sbjct: 48 SLLQDVLGDAYR----EEEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDE 103
Query: 255 NGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEVF 314
NG + + + A+ +F+ F S EG + + + LT + ++E++
Sbjct: 104 NGNEQTVNREKGKIAVTFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIY 163
Query: 315 AALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPK 374
A+ S+ APGPDGF +FF++ W +V + + + F TG ++T + LIPK
Sbjct: 164 KAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPK 223
Query: 375 IDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQ 434
I P D RPISLC+ +YKII+K+L RL+ +L ++ P QS+F+ R +DN I+
Sbjct: 224 ITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAH 283
Query: 435 EILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSAN 493
EI+H ++ +++ K ++ FK D+ KA+D V W FL LL GF + +M CVSS +
Sbjct: 284 EIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVS 343
Query: 494 YSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGP 553
YS+L NG P GLRQGDPLSP+LF+LC E L + A G I GP
Sbjct: 344 YSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGP 403
Query: 554 QISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINN 613
++HLLFADD LL KA + I + ++ SG IN KS + +
Sbjct: 404 SVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQW 463
Query: 614 LTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLAT 673
+ SGIQ+ GKYLG P K+ F FI EK+Q+RL+ W + L++ G+ L
Sbjct: 464 IMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLK 523
Query: 674 SVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHLVNWKTITRPKSIGGLG 732
S+ P Y M L + +C + +F W + K IH + + + PK +GG G
Sbjct: 524 SIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFG 583
Query: 733 IRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRA 792
+ + N LL K + ++ L +L +Y + L A + S +W SI+
Sbjct: 584 FKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYG 643
Query: 793 KDILKTGYSWRAGAGTSSF-WFSNW 816
+++L +G G G +++ W NW
Sbjct: 644 RELLVSGLKKIIGNGENTYVWMDNW 668
>At3g25485 unknown protein
Length = 979
Score = 342 bits (876), Expect = 1e-93
Identities = 254/857 (29%), Positives = 397/857 (45%), Gaps = 88/857 (10%)
Query: 8 PWMLIGDFNETHLPSEQRGG--TFHHNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGI 65
PW++ GDFNE +E G T F +N C DL++ G +TW
Sbjct: 93 PWIIFGDFNEILNMAEHSKGDDTRVTYGMREFQEMVNYCAFTDLSSHGSLYTWSNRQEND 152
Query: 66 RILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNP--LLLRFGGLPLTRGPRPFRFEA 123
IL KKLDR + N W++SFP+++ SDH + L +G +PF+F
Sbjct: 153 LIL-KKLDRVLVNNKWKMSFPQSYNVFEAGGCSDHLRCRINLNIDVGERVKGKKPFKFIN 211
Query: 124 AWIDHYDYGNVVKRSW--------STHTHNPTASLIKVMENSII-FNHDVFGNIFQRKSR 174
A + ++ +V+ W ST T +K ++ I + GN+ +R
Sbjct: 212 AIAEMQEFRPMVEAYWKTTEPVYMSTSTMFRFTKKLKALKPKIRQLAKEKMGNLVKRTKE 271
Query: 175 VEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAF 234
L Q + S + + E E +++ + EE QKS+ W+++GDKN
Sbjct: 272 AHDTLCQKQEENLKSPSPQAMIEETEAHEKWELLAEIEEKYLKQKSKLHWMQVGDKNNKT 331
Query: 235 FHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHP 294
FH V PN + E L+ F C ++
Sbjct: 332 FHRALV-------------PNDFEGATL-----EELQVLLPFRCTAE------------- 360
Query: 295 ALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSA 354
++ L P+T +E+ L M K+PGPDGF F+K W I+G + V+S
Sbjct: 361 -----DRSRLMEPVTGEEIKTVLFFMSSDKSPGPDGFTTEFYKATWEIIGAEFIVAVKSF 415
Query: 355 FLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIG 414
F G +++T++ALIPK KD+RPIS CN +YK+I+K++ RL+ L I
Sbjct: 416 FEKGFLPKGVNSTILALIPKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEILPQFIA 475
Query: 415 PYQSSFLPGRGTADNSIILQEIL-HFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLL 473
QS+F+ R N ++ EI+ + K S + A K+D+ KAFD+V W FL + L
Sbjct: 476 GNQSAFVKDRLLIQNLLLATEIVKDYHKESVSDR--CAIKIDISKAFDSVQWSFLENVLH 533
Query: 474 DFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVA 533
F + IM C+++A++S+ NG + F + GLRQG LSPYLF++ M+ LS
Sbjct: 534 SLNFSQEFIHWIMLCITTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFVIAMDVLSKM 593
Query: 534 IQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKI 593
+ A + H ++HL FADD+++ + K ++ I ++FD F++ SGLKI
Sbjct: 594 LDRAAGFKKF-GYHPRCQTIGLTHLTFADDLMVLSDGKVRSVEGIVSVFDEFAKKSGLKI 652
Query: 594 NISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQT 653
++ KS Y +G+ N + + +YLG P++ R +D+ ++E+++
Sbjct: 653 SMEKS-TIYLAGSANMYRREIEERFKFAVGSLPVRYLGLPLVTKRFSSADYRPLVEQIKR 711
Query: 654 RLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSN-NK 712
++ +W R L+ GRL L +SV+ +I +++ LP+ ID+ FLW G N
Sbjct: 712 KIGTWTARYLSYAGRLNLISSVIWSICNFWIAAFRLPRECIREIDKLCSAFLWSGPELNS 771
Query: 713 GIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTS 772
VNW+ I +PK GGLG+RS ++AN KL+W V + LW LL KY
Sbjct: 772 KRAKVNWEAICKPKREGGLGLRSLKEANDVSCLKLIWRWVSRGDSLWRKLL--KYRD--- 826
Query: 773 LLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSFWFSNWSSHGYLGSLVPIIDIH 832
AK K G +SFWF NWS+ G P+IDI
Sbjct: 827 ------------------TAKQFCKVDI---RNGGRTSFWFDNWSNMG------PLIDIA 859
Query: 833 DIHLTVKDVLTSVGQHT 849
T +L + QH+
Sbjct: 860 GQDDTDPHILMPLKQHS 876
>At1g31100 hypothetical protein
Length = 1090
Score = 336 bits (862), Expect = 4e-92
Identities = 257/864 (29%), Positives = 400/864 (45%), Gaps = 72/864 (8%)
Query: 8 PWMLIGDFNETHLPSEQRGGTFHH--NRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGI 65
PW+++GDFN+ P+E T + R F + + L DL G FTW N +
Sbjct: 49 PWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWW-NKSAT 107
Query: 66 RILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAW 125
R ++KKLDR + N W FP A+ SDH + L + R RPFRF
Sbjct: 108 RPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPL-MHREKRPFRFYNFL 166
Query: 126 IDHYDYGNVVKRSWST-----HTHNPTASLIKVMENSI-IFNHDVFGNIFQRKSRVEWRL 179
+ + D+ ++V W + + + +K ++N I F+ + F N+ +R +
Sbjct: 167 LQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLV 226
Query: 180 KGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQT 239
Q+ + + LE E Q ++ ++ EE + Q+SR W+ GD NT++FH
Sbjct: 227 LYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMA 286
Query: 240 VIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPAL--- 296
R+ N IH + NG+ ++E ++YF G ++ E L
Sbjct: 287 DSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLL-GGEVGPPMLIQEDFDLLLPFR 345
Query: 297 -DDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAF 355
K L +++++ +A S K GPDGF FFK+ W ++G +V V F
Sbjct: 346 CSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFF 405
Query: 356 LTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCN-----TLYKIITKVLVHRLRPFLN 410
+ + T + LIPKI + + DFRPIS CN TLYK+I ++L +RL+ L+
Sbjct: 406 TSSVLLKQWNATTLVLIPKITNASKMNDFRPIS-CNDFGPITLYKVIARLLTNRLQCLLS 464
Query: 411 NLIGPYQSSFLPGRGTADNSIILQEILH-FMKRSKRKKGYVAFKLDLEKAFDNVNWDFLN 469
+I P+QS+FLPGR A+N ++ E++ + +++ +G + K+DL KAFD++ WDF+
Sbjct: 465 QVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGML--KVDLRKAFDSIRWDFII 522
Query: 470 SCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEK 529
S L G PD V I C+S+ +S+ NGN FK T GLRQG+PLSP+LF+L ME
Sbjct: 523 SALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEV 582
Query: 530 LSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRAS 589
S ++ ++ Q + H ISHL+FADD+++F SS L I+ + F+ S
Sbjct: 583 FS-SLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWS 641
Query: 590 GLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILE 649
GL +N K+ Y L + I+++T K + +++ +LE
Sbjct: 642 GLVLNREKTHLY------------LAGLDRIEASTIARKL----------RIAEYGPLLE 679
Query: 650 KMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS 709
K+ R SW + L+ GR+ L SV+S I +++ LP+ I+ FLW G+
Sbjct: 680 KLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGN 739
Query: 710 NN--KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKY 767
+ KG V W + PK GG G LW
Sbjct: 740 IDVKKGAK-VAWSEVCLPKEEGGSGY-----------------YFSEKESLWAAWHKFHN 781
Query: 768 SSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNWSSHGYL---- 822
S E + ++ S +W S++R + + G G SFWF NWS G L
Sbjct: 782 FRNKSFWEIDESATDSWTWRSLLRLRTVAGRFLFSVLGDGKKISFWFDNWSPLGPLFKLF 841
Query: 823 GSLVPIIDIHDIHLTVKDVLTSVG 846
GS P I V D + VG
Sbjct: 842 GSSGPRALCIPIQAKVADACSDVG 865
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.143 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,149,342
Number of Sequences: 26719
Number of extensions: 1170315
Number of successful extensions: 3364
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2952
Number of HSP's gapped (non-prelim): 133
length of query: 1214
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1103
effective length of database: 8,352,787
effective search space: 9213124061
effective search space used: 9213124061
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC149130.9