BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149050.11 - phase: 0
(163 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11680 unknown protein 113 4e-26
At1g68070 RING zinc finger like protein 113 5e-26
At1g12760 unknown protein 103 5e-23
At3g61180 unknown protein 100 3e-22
At1g63170 unknown protein 99 1e-21
At5g55970 unknown protein 86 7e-18
At4g32600 unknown protein 83 6e-17
At4g26580 putative protein 79 1e-15
At1g80400 putative RING zinc finger protein 77 5e-15
At3g11110 hypothetical protein 69 9e-13
At5g10650 Pspzf zinc finger protein - like 62 1e-10
At2g15530 putative RING zinc finger protein 62 1e-10
At5g24870 RING finger-like protein 60 5e-10
At4g09130 putative protein 60 5e-10
At5g05810 putative protein 59 1e-09
At3g58720 putative protein 59 1e-09
At3g55530 unknown protein 59 1e-09
At5g57750 putative protein 59 2e-09
At3g47990 unknown protein 59 2e-09
At2g17450 pseudogene 58 2e-09
>At4g11680 unknown protein
Length = 390
Score = 113 bits (283), Expect = 4e-26
Identities = 58/148 (39%), Positives = 80/148 (53%), Gaps = 7/148 (4%)
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLP 68
L ++ L + FF +I C+ IIA+ YA+ +EGAS++DI +P
Sbjct: 242 LCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD----QEGASKNDIDQMP 297
Query: 69 MYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVDGTELYRL 128
+RF + + + + G+ + E SL P+D+ECCICLC Y DG EL L
Sbjct: 298 KFRFTKTGNVEKLSGKARGIMTECGTDSPI---ERSLSPEDAECCICLCEYEDGVELREL 354
Query: 129 PCTHHFHCECIGRWLRTKATCPLCKFNI 156
PC HHFHC CI +WL + CPLCKFNI
Sbjct: 355 PCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>At1g68070 RING zinc finger like protein
Length = 343
Score = 113 bits (282), Expect = 5e-26
Identities = 69/159 (43%), Positives = 88/159 (54%), Gaps = 9/159 (5%)
Query: 4 SHSCRLTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQ-IIALAYALTQPLRIREGASED 62
+H LT V L+ + FF A+F + ++ AL C + IIAL YA+ +EGASE
Sbjct: 189 THLYWLTFVFLAFDVFF-AIFCVVLACLIGIALCCCLPCIIALLYAVAG----QEGASEA 243
Query: 63 DIKSLPMYRF-CQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVD 121
D+ LP YRF N D + S N + E L P+D++CCICL Y D
Sbjct: 244 DLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGN--ERVLLPEDADCCICLSSYED 301
Query: 122 GTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
G EL LPC HHFH CI +WL+ ATCPLCKFNI G+
Sbjct: 302 GAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGN 340
>At1g12760 unknown protein
Length = 408
Score = 103 bits (256), Expect = 5e-23
Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLP 68
L++V L + FF +I C+ IIA+ YA+ +EGAS++DI+ L
Sbjct: 252 LSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAD----QEGASKEDIEQLT 307
Query: 69 MYRFCQPNVMIMVDKNKTQLEARTGSHNRSHIS-------ELSLHPDDSECCICLCPYVD 121
++F + + D NK + G+ E +L +D+ECCICL Y D
Sbjct: 308 KFKFRK-----LGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYED 362
Query: 122 GTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
GTEL LPC HHFHC C+ +WL ATCPLCK+NI
Sbjct: 363 GTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 397
>At3g61180 unknown protein
Length = 379
Score = 100 bits (250), Expect = 3e-22
Identities = 55/129 (42%), Positives = 74/129 (56%), Gaps = 7/129 (5%)
Query: 30 LIVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFC--QPNVMIMVDKNKTQ 87
LI C+ IIA+ YAL +EGA +++I+ L ++F + + + + +TQ
Sbjct: 244 LIGIAVCCCLPCIIAILYALAD----QEGAPDEEIERLLKFKFLTVKNSEKVNGEIRETQ 299
Query: 88 LEARTGSHNRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKA 147
TG S +E L +D+EC ICLC Y DG EL LPC HHFH C+ +WLR A
Sbjct: 300 GGIMTGLDTESQ-TERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINA 358
Query: 148 TCPLCKFNI 156
TCPLCKFNI
Sbjct: 359 TCPLCKFNI 367
>At1g63170 unknown protein
Length = 381
Score = 98.6 bits (244), Expect = 1e-21
Identities = 56/152 (36%), Positives = 80/152 (51%), Gaps = 8/152 (5%)
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLP 68
L +V L + FF +I C+ IIA+ YA+ + +EGAS++DI L
Sbjct: 222 LCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAE----QEGASKEDIDQLT 277
Query: 69 MYRFCQPNVMIMVDKNKTQLEARTGSH----NRSHISELSLHPDDSECCICLCPYVDGTE 124
++F + + ++ Q + +G E +L +D+ECCICL Y D TE
Sbjct: 278 KFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETE 337
Query: 125 LYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
L LPC HHFHC C+ +WL ATCPLCK+NI
Sbjct: 338 LRELPCGHHFHCGCVDKWLYINATCPLCKYNI 369
>At5g55970 unknown protein
Length = 343
Score = 86.3 bits (212), Expect = 7e-18
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 22/151 (14%)
Query: 5 HSCRLTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIA--LAYALTQPLRIREGASED 62
H+ +L ++C+SL + +SF L +F L C+V +I+ L Y + R AS+D
Sbjct: 208 HAPKLHVLCVSLLAWNAICYSFPFLLFLF--LCCLVPLISSLLGYNMNMGSSDR-AASDD 264
Query: 63 DIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVDG 122
I SLP ++F + +D + + + S+ + DD ECCICL Y D
Sbjct: 265 QISSLPSWKFKR------IDDSASDSD-----------SDSATVTDDPECCICLAKYKDK 307
Query: 123 TELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
E+ +LPC+H FH +C+ +WLR + CPLCK
Sbjct: 308 EEVRKLPCSHKFHSKCVDQWLRIISCCPLCK 338
>At4g32600 unknown protein
Length = 453
Score = 83.2 bits (204), Expect = 6e-17
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 38 CIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNR 97
CI+ I+ LTQP GA+ + I +LP ++F D N + + G
Sbjct: 294 CIISILGYREDLTQP----RGATPESINALPTHKFKLKKSRSNGDDNGSST-SEGGVVAA 348
Query: 98 SHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
+E ++ +D+ CCICL Y + EL LPC+H FH EC+ +WL+ A+CPLCK +
Sbjct: 349 GTDNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEV 407
>At4g26580 putative protein
Length = 464
Score = 79.0 bits (193), Expect = 1e-15
Identities = 45/146 (30%), Positives = 74/146 (49%), Gaps = 25/146 (17%)
Query: 9 LTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIRE-GASEDDIKSL 67
L ++C+SL + +SF ++F L C+V +++ + E GAS+D I SL
Sbjct: 338 LHVLCISLLAWNALCYSF--PFLLFLLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSL 395
Query: 68 PMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLCPYVDGTELYR 127
P +++ ++D+ +A +D ECCICL Y + E+ +
Sbjct: 396 PSWKYK------LIDETSDSSQAN----------------NDPECCICLAKYKEKEEVRK 433
Query: 128 LPCTHHFHCECIGRWLRTKATCPLCK 153
LPC+H FH +C+ +WLR + CPLCK
Sbjct: 434 LPCSHRFHLKCVDQWLRIISCCPLCK 459
>At1g80400 putative RING zinc finger protein
Length = 407
Score = 76.6 bits (187), Expect = 5e-15
Identities = 46/159 (28%), Positives = 74/159 (45%), Gaps = 24/159 (15%)
Query: 4 SHSCRLTMVCLSLNEFFDAVFSFWIYLIVFGALFCIVQIIALAYALTQPLRIREGASEDD 63
S S +L +C++ F + + + I+ + C + + + GA+ +
Sbjct: 253 SDSPKLYRLCIAFLTF--SCIGYAMPFILCATICCCLPCLISVLGFRENFSQTRGATAEA 310
Query: 64 IKSLPMYRFCQPNVMIMVDKNKTQLEART---------GSHNRSHISELSLHPDDSECCI 114
I +LP+YRF K++ LE GS + IS +D+ CCI
Sbjct: 311 INALPVYRF--------KSKSRNDLEFSEEGEGGFLLLGSQKKRLISG-----EDASCCI 357
Query: 115 CLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
CL Y D ++ LPC+H FH +C+ +WL+ ATCPLCK
Sbjct: 358 CLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCK 396
>At3g11110 hypothetical protein
Length = 158
Score = 69.3 bits (168), Expect = 9e-13
Identities = 25/52 (48%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIRI 158
++ ECCICL + +G ++ LP C+H +HCEC+ RWL+T+++CPLC+ +IR+
Sbjct: 103 EEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRV 154
>At5g10650 Pspzf zinc finger protein - like
Length = 525
Score = 62.0 bits (149), Expect = 1e-10
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 103 LSLHPDDS-ECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
+SL+ DD +C IC YVDG EL +PC H +H C+ +WLR K CP+CK
Sbjct: 465 ISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICK 516
>At2g15530 putative RING zinc finger protein
Length = 704
Score = 62.0 bits (149), Expect = 1e-10
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 95 HNRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
H S S + LH + CCIC YV+G L L C H FH +CI +W+ K CP+CK
Sbjct: 639 HTSSSPSSVELHQNIEPCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICK 697
>At5g24870 RING finger-like protein
Length = 520
Score = 60.1 bits (144), Expect = 5e-10
Identities = 24/46 (52%), Positives = 29/46 (62%)
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
DD +C IC YVDG E+ LPC H +H C +WLR K CP+CK
Sbjct: 464 DDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICK 509
>At4g09130 putative protein
Length = 357
Score = 60.1 bits (144), Expect = 5e-10
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 26/106 (24%)
Query: 54 RIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECC 113
R+R G +D I+S P + + S + + EC
Sbjct: 87 RVRRGIDKDVIESFPAFLY-------------------------SEVKAFKIGNGGVECA 121
Query: 114 ICLCPYVDGTEL-YRLPCTHHFHCECIGRWLRTKATCPLCKFNIRI 158
ICLC + D L + PC+H FH CI WL +++TCP+C+ N+ +
Sbjct: 122 ICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSL 167
>At5g05810 putative protein
Length = 407
Score = 58.9 bits (141), Expect = 1e-09
Identities = 27/63 (42%), Positives = 38/63 (59%), Gaps = 3/63 (4%)
Query: 103 LSLHPDDSECCICLCPYVDGTELYRL--PCTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
LS H D EC +CL + + TE+ RL C H FH EC+ WL +TCPLC++ + D
Sbjct: 137 LSGHKDGLECAVCLARF-EPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195
Query: 161 IMV 163
I++
Sbjct: 196 ILL 198
>At3g58720 putative protein
Length = 238
Score = 58.9 bits (141), Expect = 1e-09
Identities = 26/64 (40%), Positives = 34/64 (52%)
Query: 93 GSHNRSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLC 152
GS + + LS DD C +CL + + PC H FH ECI WL+TK CP+C
Sbjct: 125 GSESSRNTQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVC 184
Query: 153 KFNI 156
+F I
Sbjct: 185 RFVI 188
>At3g55530 unknown protein
Length = 273
Score = 58.9 bits (141), Expect = 1e-09
Identities = 33/106 (31%), Positives = 51/106 (47%), Gaps = 11/106 (10%)
Query: 60 SEDDIKSLPMYRFCQPNVMIMVDKNKTQL--EARTGSHNRSHISELSLHP----DDSECC 113
SE++I +LP++++ ++ +N L +A T S + + D+ C
Sbjct: 158 SEEEINALPVHKY-----KVLDPENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCS 212
Query: 114 ICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIG 159
+CL G + LPC H FH CI WLR + TCP+CKF G
Sbjct: 213 VCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHSG 258
>At5g57750 putative protein
Length = 210
Score = 58.5 bits (140), Expect = 2e-09
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 103 LSLHPDDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNI 156
+ L D S+C +CL + EL LP C+H FH ECI WL T +TCPLC+ N+
Sbjct: 113 IGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNL 167
>At3g47990 unknown protein
Length = 341
Score = 58.5 bits (140), Expect = 2e-09
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 107 PDD-SECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
PDD EC ICL + G E+ LPC H+FH ECI +WLR CP C+ ++
Sbjct: 212 PDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSV 262
>At2g17450 pseudogene
Length = 185
Score = 58.2 bits (139), Expect = 2e-09
Identities = 23/47 (48%), Positives = 32/47 (67%), Gaps = 1/47 (2%)
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
D +EC ICL + DG E+ LP C H FH ECI +WL ++++CP C+
Sbjct: 98 DSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,719,916
Number of Sequences: 26719
Number of extensions: 142432
Number of successful extensions: 822
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 307
length of query: 163
length of database: 11,318,596
effective HSP length: 92
effective length of query: 71
effective length of database: 8,860,448
effective search space: 629091808
effective search space used: 629091808
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149050.11