BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149039.3 + phase: 0 /pseudo
         (2185 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                        382  e-105
At2g15410 putative retroelement pol polyprotein                       312  1e-84
At3g31530 hypothetical protein                                        273  1e-72
At2g15100 putative retroelement pol polyprotein                       269  1e-71
At1g37200 hypothetical protein                                        244  5e-64
At2g14400 putative retroelement pol polyprotein                       216  2e-55
At2g06320 putative retroelement pol polyprotein                       198  3e-50
At1g37060 Athila retroelment ORF 1, putative                          197  6e-50
At2g13060 pseudogene                                                  185  3e-46
At2g13230 pseudogene                                                  180  7e-45
At1g36830 hypothetical protein                                        170  1e-41
At2g11940 putative retroelement gag/pol polyprotein                   165  2e-40
At2g13330 F14O4.9                                                     133  1e-30
At2g12040 T10J7.2                                                     120  7e-27
At2g07410 putative retroelement pol polyprotein                       111  5e-24
At4g04060 putative transposon protein                                 102  2e-21
At2g07660 putative retroelement pol polyprotein                       100  9e-21
At2g10780 pseudogene                                                   96  2e-19
At4g07610                                                              94  9e-19
At1g35370 hypothetical protein                                         84  7e-16

>At1g20390 hypothetical protein
          Length = 1791

 Score =  382 bits (981), Expect = e-105
 Identities = 248/727 (34%), Positives = 366/727 (50%), Gaps = 47/727 (6%)

Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
            I+Y SK   + ETRY ++EK   A+  +A++LR Y  +HT  +++   P++        +
Sbjct: 1100 IFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQS 1158

Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
            G++ +W V LSEYDI F+ + A+K  +LAD L   PL   +        EE         
Sbjct: 1159 GRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE--------- 1209

Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
                          W L  DG+ +A G GIG  +VSP    +  + R+ F  TNN+AEYE
Sbjct: 1210 --------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYE 1255

Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
              I G+  A  M+I  +  + DS L+  Q+ GE+E  + K+  Y    + +   F   +L
Sbjct: 1256 VLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKL 1315

Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVP-IIKVQRLERPS-----HVFAIGDVIDQAG 1763
              IPR +N  ADALA L+    +   +D+  II V+ +++PS      V  +  +     
Sbjct: 1316 SKIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNA 1371

Query: 1764 ENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRL---TSRFLLDGDILYKRNYDMVL 1820
             +  D   W  +I+ +L     P      DK T RRL    +++ L  + L K +    +
Sbjct: 1372 PDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAM 1426

Query: 1821 LRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI 1880
            L C+   E  ++M + H+G    H+ G  ++ KL + G+YW  M  DC     KC +CQ 
Sbjct: 1427 LNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQR 1486

Query: 1881 YADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYT 1940
            +A  IH P   L    +P+PF  W +D++G +   AS    FILV  DYFTKWVEA SY 
Sbjct: 1487 HAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWVEAESYA 1544

Query: 1941 NVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 2000
             +    V  F+   IICR+G+P +IITDNG+   +   +  C  +KI  + S+P  PQ N
Sbjct: 1545 TIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGN 1604

Query: 2001 GAVEATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2059
            G  EATNK I   ++K +   K  W + L   L  YRTT RS+T  TPF+  YGMEA+ P
Sbjct: 1605 GQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAP 1664

Query: 2060 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHP 2119
             EV   SLR  M  K  E    +   D+L+ +EE R  A+ R Q+YQ      +++KVH 
Sbjct: 1665 AEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHN 1723

Query: 2120 REFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNA 2178
            R F VG+LVL++      +   GK   N+EG Y V K    G   L  M G  +P   N+
Sbjct: 1724 RHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNS 1783

Query: 2179 DIVKKYF 2185
              +K+Y+
Sbjct: 1784 MHLKRYY 1790



 Score = 43.1 bits (100), Expect = 0.002
 Identities = 27/113 (23%), Positives = 51/113 (44%), Gaps = 4/113 (3%)

Query: 175 EFDKYNGLTCPQNHIVKY---VRKMSNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKDDV 230
           + + YNG   P+  +  +   + +     DN D+     F + L   A  W++ L  + +
Sbjct: 173 KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSI 232

Query: 231 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 283
            +F +L ++F  HY      + +   L S+SQ  +ES R +  R++     IT
Sbjct: 233 DSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNIT 285


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  312 bits (800), Expect = 1e-84
 Identities = 204/608 (33%), Positives = 296/608 (48%), Gaps = 72/608 (11%)

Query: 1639 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR 1698
            F  +NN AEYEA I G+  A  + +K +  Y DS LV +Q  G +E  + ++  Y    R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249

Query: 1699 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKVQ-RLERPS 1750
             L   F   EL  IPR +N  ADALA L+S    +          DVP IK+Q  + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309

Query: 1751 HVFAIGDVIDQAGENVVDYKP--------------------------------------- 1771
                I    +Q    +V   P                                       
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369

Query: 1772 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLTSR---FLLDGDILYKRNYDMVLLR 1822
                  W  +I+ ++  R  P     +DK   RRL +R   + L  + L + +   VLL 
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424

Query: 1823 CVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYA 1882
            C+D+ EA+Q+M ++H+G    H+ G  ++ K+ + G YW  M  DC +   +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484

Query: 1883 DKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNV 1942
              IH+P   L     P+PF  W +D+I      AS    +ILV  DYFTKW EA SY  +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPFP--ASRQKKYILVMTDYFTKWFEAESYARI 1542

Query: 1943 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 2002
              + V  F+  NIIC +G+P +I+TDNGT   +   +  C ++KI    S+P  PQ NG 
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602

Query: 2003 VEATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2061
             EATNK I   ++K +   K  W + L   L  YRTT R ST  TPFSL YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662

Query: 2062 VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVH 2118
              +P++R   +I +  L++    Q   D L+ +EE+R  A+ R Q+YQ      ++KKV 
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718

Query: 2119 PREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2177
             R F  G+LVL++      +   GK   ++EGPY++ K    G   L  MDG  +P   N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778

Query: 2178 ADIVKKYF 2185
            +  +K+Y+
Sbjct: 1779 SANLKRYY 1786



 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 49/84 (57%), Gaps = 1/84 (1%)

Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
            I+Y+SK     E RY  LEK   A+  +A++LR Y  ++T  +++   P++ I      +
Sbjct: 1085 IFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTNQ-PLRTILHSPSQS 1143

Query: 1530 GKIARWQVLLSEYDIVFKTQKAIK 1553
            G++A+W V LSEYDI +K +   K
Sbjct: 1144 GRLAKWAVELSEYDIAYKNRTCAK 1167



 Score = 31.6 bits (70), Expect = 5.3
 Identities = 22/102 (21%), Positives = 43/102 (41%), Gaps = 4/102 (3%)

Query: 179 YNGLTCPQNHI----VKYVRKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHTFD 234
           Y GL  P+  +    +   R   + +D D+     F   L   A  W++ L  + + +  
Sbjct: 258 YEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVH 317

Query: 235 ELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 276
            L  +F  +YG       +   L +++Q  +ES R +  R++
Sbjct: 318 ALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFK 359


>At3g31530 hypothetical protein
          Length = 831

 Score =  273 bits (697), Expect = 1e-72
 Identities = 186/628 (29%), Positives = 298/628 (46%), Gaps = 107/628 (17%)

Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
            I+Y+S+ FT  E+RY  +EK   A+  +A++LR Y  +H+  ++  M P++ I      +
Sbjct: 307  IFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQS 365

Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
            G++A+W + LSEYDI ++ +   K  +LAD                     I+ L +K+ 
Sbjct: 366  GRLAKWTIELSEYDIEYQNKTCAKSQVLADF--------------------IVELPTKEA 405

Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
             E  +D      + W L  DG+ +  G G+G  + SP G           E TNN+AEYE
Sbjct: 406  RENPLD------TTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYE 448

Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
            A + G+  A  ++I     + DS L+ NQ  GE+ T   K+  Y  + + L   F + EL
Sbjct: 449  ALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFEL 508

Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR----LERPSHVFAIGDVIDQAGEN 1765
              IPR EN  ADALA L+S    +    +P+  +++    L +  HV  I    DQ   +
Sbjct: 509  TRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPD 568

Query: 1766 VVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVD 1825
              +   W   I  ++   + P  + K   + L+   +RF+L    LYK      L+ CV+
Sbjct: 569  DCN-SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVE 625

Query: 1826 EHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKI 1885
                 ++M ++H G+                                        +A  I
Sbjct: 626  AEAICKIMKEIHSGS----------------------------------------HAPTI 645

Query: 1886 HVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQ 1945
            H P   L+ I+SP+PF  W +D+IG + P  S     +LV  DYF+KW+EA SY ++   
Sbjct: 646  HQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDA 703

Query: 1946 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 2005
             V  F+  +I+CR+G+P +I+TDNG+   +   Q  C+++ I    S+P  PQ NG  EA
Sbjct: 704  QVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEA 763

Query: 2006 TNKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2065
             N+                   L   L  +RTT R +T  TPF+ +YG E V+P E+ +P
Sbjct: 764  ANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVP 804

Query: 2066 SLRVIMEAKLSEAEWCQSRYDQLNLIEE 2093
            SLR  +  + ++ +  Q+  D+L+LI+E
Sbjct: 805  SLRRSLSPE-NDPDNTQTPLDELDLIDE 831


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  269 bits (688), Expect = 1e-71
 Identities = 200/716 (27%), Positives = 338/716 (46%), Gaps = 89/716 (12%)

Query: 1481 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLS 1540
            +TRY M+EK   A+  AA++LR Y  +H   +++ + P++ I      +G++ +W + LS
Sbjct: 691  KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSGRLGKWAIELS 749

Query: 1541 EYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDP 1600
            E+D+ F+ + ++  ++                ++ F      +++S++     + + P  
Sbjct: 750  EFDLEFRARTSLNSTMDTSR------------QWGFIK---TWVRSRN-----LSDAPTA 789

Query: 1601 NSKWG--LVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1658
            N   G     D  + AY   +  V     G    F    +    N+ A   A +    E 
Sbjct: 790  NRYSGEYEAKDACMEAYLNLVREV----SGRFEQFELTRIPRAENSAANALAALASTFEV 845

Query: 1659 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 1718
               R+  ++     ++ +++I           +  R   RRL     +  LH +  DE +
Sbjct: 846  TLPRVIPVETISQPSIRLDEI---------SFVTTRAMRRRLDAQSAENGLHQLGDDE-E 895

Query: 1719 MADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKP--WYYD- 1775
            ++DA+                         P+ +     + D     + D  P  W  D 
Sbjct: 896  ISDAV------------------------HPTEIVENQSLPDNHNAPLPDQPPHDWGADW 931

Query: 1776 ---IKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEAEQL 1832
               I+ ++L+   P  A K   + L+   +RF +  DILY+R +      C+   +   +
Sbjct: 932  REPIRDYILNGTLP--AEKWAARKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTV 989

Query: 1833 MHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHAL 1892
            M +VHDGT   H  G +++ K+ + GYYW  +  DC  +ARKC +CQ +A  I  P   L
Sbjct: 990  MKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELL 1049

Query: 1893 NVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 1952
              +S+P+PF  W +D++G +                  T+ VEAA+Y+N+T   V  FI 
Sbjct: 1050 TTVSAPYPFMKWLMDIVGPLHVS---------------TRGVEAAAYSNITHVQVWNFIW 1094

Query: 1953 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKR 2012
             +IICR+G+P +I+TDNG+   +   +  CEE++I   +S+P  PQ NG  EA NK I  
Sbjct: 1095 KDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIIS 1154

Query: 2013 IVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIM 2071
             ++K +  YK  W   L   L   RTT R +T  TPFSL+YGMEAV+P E+++PS R I 
Sbjct: 1155 NLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIR 1214

Query: 2072 EAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKR 2131
              + +E E  +   D ++ I+E+R  A+AR Q+Y       ++  V  R F+VG LVL R
Sbjct: 1215 NPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVL-R 1272

Query: 2132 RISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
            R+ Q    +  GK   ++EGPY +      G   L +M+G  +    N+  +K+++
Sbjct: 1273 RVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFY 1328


>At1g37200 hypothetical protein
          Length = 1564

 Score =  244 bits (622), Expect = 5e-64
 Identities = 167/548 (30%), Positives = 256/548 (46%), Gaps = 93/548 (16%)

Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
            IYY+SK   D ET Y  +EK   A+  +A++LR YL +H   ++    PI+ I      +
Sbjct: 934  IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIRTILHSTTQS 992

Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
             ++A+W + LSEYDI ++T+ + K  +LAD +   PL D                     
Sbjct: 993  SRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL-------------------- 1032

Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
                  +G + N KW L  DG+ N  G G G  + SP G  I  + R+ F  +NN +EYE
Sbjct: 1033 ------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYE 1086

Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
            A I GI+ A  MRI+ +  + DS LV +Q  GE+E    ++  Y +  + L   F   EL
Sbjct: 1087 ALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFEL 1146

Query: 1710 HHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPSHVFAI------------ 1755
              IPR EN   DALA L+S     V       II V+ +E PS    +            
Sbjct: 1147 TRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHAGMETSATCN 1201

Query: 1756 ---------------------GDVIDQA----GENVVDYKP-----WYYDIKQFLLSREY 1785
                                 G   ++A     E +  Y+P     W   I  ++     
Sbjct: 1202 FTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIERGIT 1261

Query: 1786 PPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHA 1845
            PP   K + + L+  ++R+ +    L KR+     + C    + + LM  +H+G   +H 
Sbjct: 1262 PP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHY 1319

Query: 1846 TGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWG 1905
            +G T+   +L           DC  H+ +C KCQ +A  +H PP  ++ ISSP+PF  W 
Sbjct: 1320 SGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWS 1369

Query: 1906 IDMIGRIEPKASNGH---HFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVP 1962
            +D++  +E  AS G      +LV  DY TKW+E  ++  VT++ V  F+  NI+ R+G+P
Sbjct: 1370 MDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIP 1427

Query: 1963 SKIITDNG 1970
             +I+TDNG
Sbjct: 1428 YEIVTDNG 1435



 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 33/98 (33%), Positives = 52/98 (52%), Gaps = 2/98 (2%)

Query: 2089 NLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWTPNY 2147
            + I+E+R  A+ + Q+YQ      ++  +  R F+VGELVL++  S   +   GK   N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524

Query: 2148 EGPYVVKKAFSGGALILTHM-DGVELPNPVNADIVKKY 2184
            EGPY + +    G   L  + +GV    P NA  +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  216 bits (549), Expect = 2e-55
 Identities = 160/538 (29%), Positives = 251/538 (45%), Gaps = 80/538 (14%)

Query: 1674 LVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1731
            +++NQ  G++E   +++  Y    + L   F K EL  IPR +N  ADALA L+S     
Sbjct: 790  IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849

Query: 1732 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQA---GENVVDYKPWYYDIKQFLLSREYPPG 1788
            VN    V  I  + ++     F +      A   G+  V+  P    +K+        P 
Sbjct: 850  VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905

Query: 1789 ASKQDKKTLRRLTSRFL-----------LDGDIL--------------YKRNYDMVLLRC 1823
             + Q+   +  +                +D DIL              Y+R      L  
Sbjct: 906  PAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLS 965

Query: 1824 VDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYAD 1883
            +     E +M +VH+G   +H++G  M+ K+ +  YYW  M  DC ++A++C +CQ++A 
Sbjct: 966  IFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAP 1025

Query: 1884 KIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVT 1943
             IH P    + IS+P+PF  W +D+IG +  +++ G  ++LV  DYF+KW+EA +     
Sbjct: 1026 LIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA----- 1079

Query: 1944 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 2003
                       I+  +G+                        K+ +  S+   PQ NG  
Sbjct: 1080 -----------ILLNWGI------------------------KVSY--STLRYPQGNGQA 1102

Query: 2004 EATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2062
            EA NK I   ++K +   K  W++ L   L  YRTT R STG TPFSLVYGM+AV+P E+
Sbjct: 1103 EAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAEL 1162

Query: 2063 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREF 2122
             +P LR   EA L+E E      D L+ I E+R  A+ + Q+YQ      ++ KV  R F
Sbjct: 1163 NVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPF 1221

Query: 2123 KVGELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 2179
             VG+ VLKR   +++ +  GK   N+EGPY+V +    G   L  ++   +  P N +
Sbjct: 1222 FVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 26/111 (23%), Positives = 49/111 (43%), Gaps = 4/111 (3%)

Query: 177 DKYNGLTCPQNHIVKYV----RKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHT 232
           + YNGL  P+ ++  ++    R   N  D D      F ++L   A  W+T L    +  
Sbjct: 163 ESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSISN 222

Query: 233 FDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 283
           F+EL+  F   Y        +   L +LSQ   E+ R +  +++   ++++
Sbjct: 223 FNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLS 273


>At2g06320 putative retroelement pol polyprotein
          Length = 466

 Score =  198 bits (504), Expect = 3e-50
 Identities = 143/438 (32%), Positives = 214/438 (48%), Gaps = 16/438 (3%)

Query: 1752 VFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDIL 1811
            +F+IG    Q    V    PWY D   +L     PP  +  ++K   R    +  D   L
Sbjct: 20   LFSIGKEFHQLNA-VEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYL 78

Query: 1812 YKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTH-ATGHTMSRKLLRAGYYWMAMEHDCYQ 1870
            Y    D +    V E E E ++   HD  +  H AT  T+S K+L+AG++W  M  D  +
Sbjct: 79   YTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQE 137

Query: 1871 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYF 1930
               KC  CQ   +         N I     F +WGID +G     +S G+ +ILV +DY 
Sbjct: 138  FVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYV 195

Query: 1931 TKWVEA-ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 1989
            +KWVEA AS TN  K VV K  K  I  R+GV   +I+D G +  N V + L ++  ++H
Sbjct: 196  SKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKH 254

Query: 1990 HNSSPYRPQMNGAVEATNKNIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2048
              ++PY PQ +G VE +N+ IK I++K V  T KDW   L  AL  Y+T  ++  G TPF
Sbjct: 255  KVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPF 314

Query: 2049 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQAR 2108
            +L+      L +E+E  ++  +           + R  QL+ ++E R++A    + Y+ R
Sbjct: 315  NLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKER 374

Query: 2109 MKTAFDKKVHPREFKVGELVL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 2166
             K   DKK+  ++F+VG+ VL    R+   P   GK    + GP+ + +    GA+ L  
Sbjct: 375  TKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLAG 431

Query: 2167 MDGVELPNPVNADIVKKY 2184
              GV     VN   +KKY
Sbjct: 432  KSGV---FTVNGQRLKKY 446


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  197 bits (501), Expect = 6e-50
 Identities = 142/419 (33%), Positives = 206/419 (48%), Gaps = 43/419 (10%)

Query: 1771 PWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEAE 1830
            PWY D   +L+S E PP  S  +KK   +  + F  D   LY    D +   CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393

Query: 1831 QLMHDVHDGTFRTH-ATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPP 1889
             ++   H   +  H AT  TMS K+L+AG++W +M  D  +   KC   +          
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442

Query: 1890 HALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEA-ASYTNVTKQVVA 1948
                       F +WGID +G     +S G+ +ILVAIDY +KWVEA AS+TN   +VV 
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489

Query: 1949 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNK 2008
            K  K  I  R+GVP  +I+D G +  N   + L ++  ++H  S        G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541

Query: 2009 NIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2067
             IK I++K V +T KDW   L   L  YRT  ++  G TPF+L+YG    LP+E+E  ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601

Query: 2068 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGEL 2127
              +           + R  QLN + + R++A    + Y+ R K+  DKK+  R+FKVG+ 
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661

Query: 2128 VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2184
            VL    R+   P   GK    + GP+ V      GA+ L   +G      VN   +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 1479 DCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVL 1538
            D + RY   EK   A+ +A ++ R YLV     + +    +++I+ K     ++ RW +L
Sbjct: 1221 DAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILL 1280

Query: 1539 LSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLK 1585
            L E+D+    +K I+  + ADHL+   ++D   I+   P+E++M ++
Sbjct: 1281 LQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326



 Score = 40.8 bits (94), Expect = 0.009
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 177 DKYNGLTC--PQNHIVKYVRKMSNYKDN----DSLMIHCFQDSLMEDAAEWYTSLSKDDV 230
           +K++GL    P +H+ ++ R  S  K N    D   +  F  SL + A +W  SL +  +
Sbjct: 52  NKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 111

Query: 231 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 277
            ++++   AF + +  N+R    R  +   +Q   E+F E  +R++G
Sbjct: 112 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKG 158


>At2g13060 pseudogene
          Length = 930

 Score =  185 bits (469), Expect = 3e-46
 Identities = 116/368 (31%), Positives = 185/368 (49%), Gaps = 18/368 (4%)

Query: 1768 DYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEH 1827
            DY PWY DI  +L +   P   +  +KK   R   R+  D   LYK +YD +  RC+   
Sbjct: 135  DY-PWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAAT 193

Query: 1828 EAEQLMHDVHDGTFRTH-ATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI---YAD 1883
            E   ++   H  ++  H AT  T+S K+L+A ++W  M  D  +   +C  CQ     + 
Sbjct: 194  EVPSILSHCHSSSYGGHFATFKTVS-KVLQADFWWPTMFRDTQKFISQCDPCQRRGKISK 252

Query: 1884 KIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVT 1943
            +  +PP+    +     F  WGID +G   P  SN + +ILV +DY +KWVEA +     
Sbjct: 253  RNEMPPNFRLEVEV---FDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIASLKND 307

Query: 1944 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 2003
              VV K  K+ I  R+GVP  +I+D   +  N +++ L  ++ ++H  ++PY PQ +G V
Sbjct: 308  SAVVMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQV 367

Query: 2004 EATNKNIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2062
            E +N+ IK I++K V    K+W   L  AL  Y+T  ++  G TPF L+YG    LP+E+
Sbjct: 368  EVSNRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVEL 427

Query: 2063 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREF 2122
            E  +   +           +S  D++      R+ A    + Y+ R K   DKK+  R F
Sbjct: 428  EHKAAWAVKMMNFDIKSAGESELDEI------RIHAYDNSKLYKERTKAYHDKKILTRTF 481

Query: 2123 KVGELVLK 2130
            +  + +L+
Sbjct: 482  EPNDQILR 489



 Score = 36.6 bits (83), Expect = 0.17
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 1535 WQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 1584
            W +LL E+DI  + +K ++  + ADHL+   +DD  PI  DF  EE +Y+
Sbjct: 13   WILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPIN-DFLPEENIYM 60


>At2g13230 pseudogene
          Length = 353

 Score =  180 bits (457), Expect = 7e-45
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 29/368 (7%)

Query: 1688 AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR-- 1745
            A L   +D+A++    F + +L  IPR EN  ADALA L+S   +N    +P+  +++  
Sbjct: 3    AYLALVQDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPS 58

Query: 1746 --LERPSHVFAIGDVIDQAGENVVDYKP-------WYYDIKQFLLSREYPPGASKQDKKT 1796
              L++  H F I  V     E+  D  P       W   I+ F+  R+      K + + 
Sbjct: 59   IELDKVEHAFPIQVVAGY--EDASDNSPSLGCDSEWIEPIRNFISKRKVR--LDKWEARK 114

Query: 1797 LRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLR 1856
            L+   +RF+L  + L+K      L+ CV++  A ++M +VH G+   ++ G  ++ K+ R
Sbjct: 115  LKAEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKR 174

Query: 1857 AGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKA 1916
             GY+W  M  DC        KCQ  A  IH+P   L+ I+SP+P   W +D+IG +   A
Sbjct: 175  LGYFWPTMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--A 225

Query: 1917 SNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNN 1976
            S     +LV  DYF+K  EA SY ++ +  V  F+  +I+CR+GVP +I+TDNG+   + 
Sbjct: 226  SKQKKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFIST 285

Query: 1977 VVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTYK-DWHEMLPYALHGY 2035
              Q  C+++ I    S+P   Q NG  +A NK I   ++K +T  K  W + L   L  +
Sbjct: 286  RFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSH 345

Query: 2036 RTTVRSST 2043
            RTT R +T
Sbjct: 346  RTTPRRAT 353


>At1g36830 hypothetical protein
          Length = 243

 Score =  170 bits (430), Expect = 1e-41
 Identities = 95/233 (40%), Positives = 144/233 (61%), Gaps = 7/233 (3%)

Query: 1906 IDMIGRIEPKASNGHHFI---LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVP 1962
            +D++G +E  AS G   +   LV  DY TKW+EA ++  VT++ V  F+  NI+C++G+P
Sbjct: 1    MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58

Query: 1963 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTYK 2022
             +IITDNGTNL +  ++A C+++KI    S+P+ PQ NG  EA NK I   ++K++ + K
Sbjct: 59   YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118

Query: 2023 D-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWC 2081
              W ++L   L  YRTT R ST  TPFSL YG+EAV+P+   IPS+R       S+    
Sbjct: 119  SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177

Query: 2082 QSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIS 2134
            Q   D ++ I+E+R  A+ R Q+YQ  +   ++  +  R F+VGELVL++  S
Sbjct: 178  QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score =  165 bits (418), Expect = 2e-40
 Identities = 143/550 (26%), Positives = 235/550 (42%), Gaps = 115/550 (20%)

Query: 1673 ALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM--- 1729
            A   +   G++E    ++  Y D  R L   F K EL  +PR EN  ADALA L+S    
Sbjct: 740  ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799

Query: 1730 ---------------FRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQ----------AGE 1764
                            R+   N V     ++LE  ++   +  + D+          A E
Sbjct: 800  TVRRIISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLVADE 859

Query: 1765 NVVDYK-------PWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYD 1817
            +  +Y         W   I+ ++ +   P    K + + L+   +RF L  DILY+R   
Sbjct: 860  DSTEYNLPHDWGADWREPIRNYIFNGVLP--TDKWEARKLKATCARFCLADDILYRRIIS 917

Query: 1818 MVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHK 1877
                 C+   +   ++ ++HDGT   H+ G +++ KL + GY+W  M  DC  +A +  +
Sbjct: 918  APDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSRR 977

Query: 1878 CQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAA 1937
               +               SP PF  W +D++G +   ++ G  F+L+      +WVEAA
Sbjct: 978  TFHFG-------------ISPLPFMKWSMDIVGPLHV-STRGVRFLLL------EWVEAA 1017

Query: 1938 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 1997
            +Y+ +T+  V  FI   IICR+G+P +I+TDNG    +   +A   E++I  + S+P  P
Sbjct: 1018 AYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPRYP 1077

Query: 1998 QMNGAVEATNKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2057
            Q  G VEA                                                   V
Sbjct: 1078 Q--GNVEA---------------------------------------------------V 1084

Query: 2058 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKV 2117
            +P E+++P  R I   K +EA   +   D ++ I+E+R  A+ R Q+Y       ++  V
Sbjct: 1085 IPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNSNV 1143

Query: 2118 HPREFKVGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNP 2175
              R F VG LVL RRI Q    +  GK   ++EGPY +      G  ++ +M+G  +   
Sbjct: 1144 RSRSFDVGTLVL-RRIHQNTAEKGAGKLGISWEGPYKITHIVRNGDCLI-NMEGKTVRRA 1201

Query: 2176 VNADIVKKYF 2185
             NA  +K+++
Sbjct: 1202 WNAAHLKRFY 1211



 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
            I+Y+SK F+D ETRY M+EK   A+  AA++LR Y  +H   +++ + P++ I      +
Sbjct: 644  IFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPNQS 702

Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPL 1566
            G++A+W + LSE+++ F  + ++K  +LAD L   PL
Sbjct: 703  GRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739


>At2g13330 F14O4.9
          Length = 889

 Score =  133 bits (334), Expect = 1e-30
 Identities = 78/252 (30%), Positives = 124/252 (48%), Gaps = 27/252 (10%)

Query: 1477 FTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQ 1536
            +T+ + R   +EK    +  + ++LR Y  +H   ++    PI+ I      +G++A+W 
Sbjct: 543  YTNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWA 601

Query: 1537 VLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDE 1596
            + L EYDI ++T+ ++K  +LAD +   PL D                           +
Sbjct: 602  IELREYDIEYRTRTSLKAQVLADFVIKLPLADL--------------------------D 635

Query: 1597 GPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIE 1656
            G + N KW L  DG+ N  G G+G  + SP G  I  + ++ F  +NN +EYEA I GI+
Sbjct: 636  GTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIK 695

Query: 1657 EAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDE 1716
             A +  I+ +  Y DS LV +Q  GE+E    ++  Y +  + L   F   +L  IPR E
Sbjct: 696  LAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGE 755

Query: 1717 NQMADALATLSS 1728
            N  AD LA L+S
Sbjct: 756  NTSADTLAALAS 767


>At2g12040 T10J7.2
          Length = 976

 Score =  120 bits (302), Expect = 7e-27
 Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 22/243 (9%)

Query: 1901 FSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1960
            F  WGI+ +G I P  SN + +ILV +DY +KWVEA +       VV K  K  I   +G
Sbjct: 569  FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626

Query: 1961 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTT 2020
            VP  +I+D G +  N ++  L  ++ ++H  ++PY PQ +G VE +N+ IK I++K V  
Sbjct: 627  VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684

Query: 2021 YKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 2080
                               ++  G TPF L+YG    LP+E+E  +   +          
Sbjct: 685  -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727

Query: 2081 CQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQP-DP 2139
             + R  QLN ++E ++ A    + Y+ R K   DKK+  R F+  +   K+    +P   
Sbjct: 728  GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787

Query: 2140 RGK 2142
            RGK
Sbjct: 788  RGK 790



 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 38/116 (32%), Positives = 62/116 (52%), Gaps = 2/116 (1%)

Query: 1469 AIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1528
            AIYY S+   D +  Y   EK   A+ +A ++ R YLV     + +    +KY+ +    
Sbjct: 266  AIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLMQNKDA 325

Query: 1529 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 1584
              ++ RW +LL E+DI  + +K ++  + ADHL+   +DD  PI  DF  EE +Y+
Sbjct: 326  KPRLLRWILLLQEFDIEVRDKKGVEKCV-ADHLSRIRIDDDVPIN-DFLPEENIYM 379


>At2g07410 putative retroelement pol polyprotein
          Length = 411

 Score =  111 bits (277), Expect = 5e-24
 Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 9/202 (4%)

Query: 1916 ASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1975
            +S G+ +ILVA+DY +KWVEA        +VV K  K  I  R+GV   +I+D   +  N
Sbjct: 6    SSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGRKHFIN 65

Query: 1976 NVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMV-TTYKDWHEMLPYALHG 2034
               + L ++  ++H  ++ Y PQ +G VE +N+ IK I++K V  T KD    L  AL  
Sbjct: 66   KAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLDDALWA 125

Query: 2035 YRTTVRSS----TGATPFSLVYGMEAVLPLEVEIPSLRVI--MEAKLSEAEWCQSRYDQL 2088
            Y+T  +++     G TPF+L+Y     LP+E+E  ++  +  M   +  AE  + R  QL
Sbjct: 126  YKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAE--EERLIQL 183

Query: 2089 NLIEEKRMDAVARGQSYQARMK 2110
            N ++E R++A    ++Y+ + K
Sbjct: 184  NDLDEIRLEAYESSKNYKGKRK 205


>At4g04060 putative transposon protein
          Length = 375

 Score =  102 bits (254), Expect = 2e-21
 Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 18/148 (12%)

Query: 1847 GHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGI 1906
            G  M R ++  GY+W  M  +C  H+ +C KCQ +A  +H  P  ++ ISSP+PF  W +
Sbjct: 186  GRLMKRSVV--GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSM 243

Query: 1907 DMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 1966
            D++G +E  AS G   +   +              VT++ V  F+  NI+CR+G+P +II
Sbjct: 244  DVVGPME--ASGGKKKLKNLL--------------VTEKQVEDFLWENIVCRHGIPYEII 287

Query: 1967 TDNGTNLNNNVVQALCEEFKIEHHNSSP 1994
            TDNGTNL +  ++A C++ KI    S+P
Sbjct: 288  TDNGTNLTSGKIKAFCDKCKIRLTISTP 315



 Score = 51.6 bits (122), Expect = 5e-06
 Identities = 33/94 (35%), Positives = 47/94 (49%), Gaps = 11/94 (11%)

Query: 1661 MRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMA 1720
            M I+ +  + DS LVI+Q  GE+E    ++  Y +  + L   F   EL  IPR EN  A
Sbjct: 1    MGIRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSA 60

Query: 1721 DALATLSSMFRVNHWNDVPIIK----VQRLERPS 1750
            DALA L+       +   P +K    V+ +E PS
Sbjct: 61   DALAALA-------YTSDPFVKRIIPVEGIEHPS 87


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  100 bits (249), Expect = 9e-21
 Identities = 80/340 (23%), Positives = 150/340 (43%), Gaps = 22/340 (6%)

Query: 1823 CVDEHEA--EQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI 1880
            CV    A  E+++ + H   F  H   + M R L R  Y+W+ M  D  +   KC  CQ+
Sbjct: 544  CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602

Query: 1881 YADKIHVPPHAL-NVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASY 1939
               +  VP   L N+  S W +    +D + R+     + H+ + V +D  TK     + 
Sbjct: 603  VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662

Query: 1940 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1998
            ++    +++A+   + I+  +G+P  I++D  T   +    A  +      + S+ Y PQ
Sbjct: 663  SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722

Query: 1999 MNGAVEATNKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2057
             +G  E T + ++ +++  V  +  +W + L      Y  + ++S G +P+  +YG    
Sbjct: 723  TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782

Query: 2058 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKV 2117
             PL         + E +L          +++  ++ K  +A       Q R K+  +K+ 
Sbjct: 783  TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 830

Query: 2118 HPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVV 2153
               EF+VG+LV  + ++ +       R K +P Y GPY V
Sbjct: 831  KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870


>At2g10780 pseudogene
          Length = 1611

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 83/365 (22%), Positives = 158/365 (42%), Gaps = 28/365 (7%)

Query: 1823 CVDEHEA--EQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI 1880
            CV    A  E+++ + H   F  H   + M R L R  Y+W+ M+ D  +   KC  CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210

Query: 1881 YADKIHVPPHALNVISSP-WPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASY 1939
               +  VP   L  +  P W +    +D +  +     + H+ + V +D  TK     + 
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270

Query: 1940 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1998
            ++    +++A+   + I+  +G+P  I++D  T   +   +A  +      + S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330

Query: 1999 MNGAVEATNKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2057
             +   E T + ++ +++  V  +  +W + L      Y  + ++S G +P+  +YG    
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390

Query: 2058 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKV 2117
             PL         + E +L          +++  ++ K  +A       Q R K+  +K+ 
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 1438

Query: 2118 HPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 2173
               EF+VG+LV  + ++ +       R K +P Y GPY V +     A  L      +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492

Query: 2174 NPVNA 2178
              +NA
Sbjct: 1493 PKLNA 1497



 Score = 32.7 bits (73), Expect = 2.4
 Identities = 22/86 (25%), Positives = 38/86 (43%), Gaps = 2/86 (2%)

Query: 1468 TAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAV 1527
            + I Y S++    E  Y   +    A+ +  K  R YL      + +    +KYIF +  
Sbjct: 975  SVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPE 1034

Query: 1528 VTGKIARWQVLLSEY--DIVFKTQKA 1551
            +  +  RW  L+++Y  DI +   KA
Sbjct: 1035 LNLRQRRWMELVADYNLDIAYHPGKA 1060


>At4g07610
          Length = 276

 Score = 94.0 bits (232), Expect = 9e-19
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 2/168 (1%)

Query: 1822 RCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIY 1881
            R V E E E ++   H  T+  + T      K+L+AG++W  M  +  +   KC  C   
Sbjct: 74   RYVSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRK 133

Query: 1882 ADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTN 1941
             +         N I     F +WGID IG     +S G+ +ILVA+DY +KW+EA +   
Sbjct: 134  GNISKRNEMPQNPILEVELFDVWGIDFIGPFP--SSYGNKYILVAVDYVSKWIEATASPT 191

Query: 1942 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 1989
               +VV K  K  I  R+GVP  +I+D G +  N V + L ++  ++H
Sbjct: 192  NDAKVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 239


>At1g35370 hypothetical protein
          Length = 1447

 Score = 84.3 bits (207), Expect = 7e-16
 Identities = 88/347 (25%), Positives = 145/347 (41%), Gaps = 26/347 (7%)

Query: 1846 TGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWG 1905
            +G   S + +++ +YW  M  D     R C  CQ         P  L  +  P P  +W 
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125

Query: 1906 IDMIGRIEPKA-SNGHHFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPS 1963
               +  IE    S G   I+V +D  +K     +  +  +   VA+   +N+   +G P+
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185

Query: 1964 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTYKD 2023
             I++D      ++  +   +   +E   SS Y PQ +G  E  N+ ++  ++ M      
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245

Query: 2024 -WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 2082
             W++ LP A + Y T   SS+  TPF LVYG    + L       +V + A+       Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARS-----LQ 1300

Query: 2083 SRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRRISQQP 2137
             R + L  ++   M A       Q RMK   D+    R F +G+ V       R+ S   
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353

Query: 2138 DPRGKWTPNYEGPY-VVKKAFSGGALILTHMDGVELPNPVNADIVKK 2183
                K +P Y GPY +++K   G  ++       +LP+ V  DI +K
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKC--GEVMVGNVTTSTQLPS-VLPDIFEK 1397



 Score = 36.6 bits (83), Expect = 0.17
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 1472 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGK 1531
            Y+S++    +   ++ EK   A  +A ++ RHYL+     + +    +KY+ E+ + T  
Sbjct: 891  YISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPV 950

Query: 1532 IARWQVLLSEYDIVFKTQKAIKGSILADHLA 1562
              +W   L E+D   + ++  K +++AD L+
Sbjct: 951  QQQWLPKLLEFDYEIQYRQG-KENLVADALS 980


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.340    0.148    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,807,235
Number of Sequences: 26719
Number of extensions: 1869931
Number of successful extensions: 7452
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 7137
Number of HSP's gapped (non-prelim): 258
length of query: 2185
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2070
effective length of database: 8,245,911
effective search space: 17069035770
effective search space used: 17069035770
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)