BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.16 - phase: 0 /pseudo
(332 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34260 unknown protein 159 3e-39
At2g43770 putative splicing factor 49 5e-06
At3g49660 putative WD-40 repeat - protein 41 8e-04
At5g23430 unknown protein 39 0.004
At5g60940 cleavage stimulation factor 50K chain 37 0.015
At5g42010 putative protein 36 0.026
At5g08390 katanin p80 subunit - like protein 36 0.033
At5g05570 putative protein 34 0.097
At3g18060 WD40-repeat protein 34 0.097
At5g52250 unknown protein 34 0.13
At4g02730 putative WD-repeat protein 33 0.17
At1g61210 33 0.17
At1g11160 hypothetical protein 33 0.17
At5g64630 FAS2 like protein 33 0.28
At5g16750 WD40-repeat protein 32 0.37
At3g15980 putative coatomer complex subunit 32 0.37
At2g01330 putative WD-40-repeat protein 32 0.37
At5g25150 transcription initiation factor IID-associated factor-... 32 0.48
At3g05670 unknown protein 32 0.48
At1g71840 unknown protein (At1g71840) 32 0.48
>At2g34260 unknown protein
Length = 353
Score = 159 bits (401), Expect = 3e-39
Identities = 81/121 (66%), Positives = 95/121 (77%), Gaps = 3/121 (2%)
Query: 1 MEINLGKLAFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAA 60
MEI+LG AF IDFHPS NLVA+GLIDG LHLYRY SD S VR +V AH ESCRA
Sbjct: 1 MEIDLGANAFGIDFHPSTNLVAAGLIDGHLHLYRYDSD---SSLVRERKVRAHKESCRAV 57
Query: 61 RFINGGRAVLTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCI 120
RFI+ G+ ++T S D SILATDVETG+ +A L+NAHE AVN LIN+TE+T+ASGDD GC+
Sbjct: 58 RFIDDGQRIVTASADCSILATDVETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCV 117
Query: 121 K 121
K
Sbjct: 118 K 118
Score = 141 bits (356), Expect = 4e-34
Identities = 72/122 (59%), Positives = 90/122 (73%), Gaps = 3/122 (2%)
Query: 211 RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLD 270
R+ITG +NG+I+LVGILPNRII+PI H +YP+E LA SHD+KFLGS HD MLKLW+L+
Sbjct: 234 RLITGCDNGIISLVGILPNRIIQPIGSH-DYPIEDLALSHDKKFLGSTAHDSMLKLWNLE 292
Query: 271 NILQGSRSTQRNETGVVANDGDSDDGDEMDVDNSASKFSKGNKRKNASNGHAVGDSNNFF 330
IL+GS N +G A D DSD+ D MD+DN SK SKG+KRK S + + +NNFF
Sbjct: 293 EILEGSNVNSGNASG-AAEDSDSDN-DGMDLDNDPSKSSKGSKRKTKSKANTLNATNNFF 350
Query: 331 AD 332
AD
Sbjct: 351 AD 352
>At2g43770 putative splicing factor
Length = 343
Score = 48.5 bits (114), Expect = 5e-06
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 10 FDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAV 69
+ + F+P+ L+ASG D ++ L+R D N + + H + + + G +
Sbjct: 57 YTMKFNPAGTLIASGSHDREIFLWRVHGDCKN-----FMVLKGHKNAILDLHWTSDGSQI 111
Query: 70 LTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTES--TVASGDDDGCIK 121
++ SPD ++ A DVETG I ++ H + VN + SG DDG K
Sbjct: 112 VSASPDKTVRAWDVETGKQIKKMAE-HSSFVNSCCPTRRGPPLIISGSDDGTAK 164
Score = 27.7 bits (60), Expect = 9.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSH--DRKFLGSIGHDQMLKLWDL 269
II+GS++G L + I+ + +Y + ++FS D+ F G + +D +K+WDL
Sbjct: 154 IISGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDAADKIFTGGVDND--VKVWDL 209
>At3g49660 putative WD-40 repeat - protein
Length = 317
Score = 41.2 bits (95), Expect = 8e-04
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARF-INGGRAVL 70
+ F P+ + G +D L L+ SS ++ H + + C ++ F + G+ ++
Sbjct: 204 VRFSPNGKFILVGTLDNTLRLWNISSAKF----LKTYTGHVNAQYCISSAFSVTNGKRIV 259
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
+GS D + ++ + + +L+ E +N + TE+ +ASG D ++
Sbjct: 260 SGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVR 310
Score = 36.2 bits (82), Expect = 0.026
Identities = 30/112 (26%), Positives = 45/112 (39%), Gaps = 5/112 (4%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVR--VLEVHAHTESCRAARFINGGRAV 69
+ F L+AS D + Y NT +DP+ V E H F + R +
Sbjct: 30 VKFSSDGRLLASASADKTIRTYTI---NTINDPIAEPVQEFTGHENGISDVAFSSDARFI 86
Query: 70 LTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
++ S D ++ DVETGS I L A N + + SG D ++
Sbjct: 87 VSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVR 138
Score = 35.0 bits (79), Expect = 0.057
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 224 VGILPNRIIEPIAEHS--EYPVERLAFSHDRKFLGSIGHDQMLKLWDLD 270
+ + + I EP+ E + E + +AFS D +F+ S D+ LKLWD++
Sbjct: 53 INTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVE 101
Score = 33.5 bits (75), Expect = 0.17
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 9 AFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRA 68
AF ++F+P N++ SG D + ++ D T ++VL AH++ A F G
Sbjct: 116 AFCVNFNPQSNMIVSGSFDETVRIW----DVTTGKCLKVLP--AHSDPVTAVDFNRDGSL 169
Query: 69 VLTGSPDFSILATDVETGSTIARL 92
+++ S D D TG + L
Sbjct: 170 IVSSSYDGLCRIWDSGTGHCVKTL 193
>At5g23430 unknown protein
Length = 837
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
+DFHP ASG +D +L ++ + HT RF GR V++
Sbjct: 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGC------IHTYKGHTRGVNVLRFTPDGRWVVS 160
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G D + D+ G + +HE + L + E +A+G D +K
Sbjct: 161 GGEDNIVKVWDLTAGKLLTEF-KSHEGQIQSLDFHPHEFLLATGSADRTVK 210
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGH-DQMLKLWDLD 270
+++G E+ ++ + + +++ H E ++ L F H +FL + G D+ +K WDL+
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSH-EGQIQSLDF-HPHEFLLATGSADRTVKFWDLE 215
>At5g60940 cleavage stimulation factor 50K chain
Length = 429
Score = 37.0 bits (84), Expect = 0.015
Identities = 59/239 (24%), Positives = 89/239 (36%), Gaps = 43/239 (17%)
Query: 53 HTESCRAARFINGGRAVLTGSPDFSILATDVE------TGSTIAR----LDNAHEAAVNR 102
H R ARF G TG D SI +V +G T AR H +N
Sbjct: 122 HKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHAEPIND 181
Query: 103 LINLTESTVA-SGDDDGCIKTLLLHLTQ*KYWPQVETGLFLFAIFDEIKSKPNLNFLKMS 161
L ST+ S D CIK T T F +F + + +++F
Sbjct: 182 LDFHPRSTILISSAKDNCIKFFDFSKT---------TAKRAFKVFQDTHNVRSISFHPSG 232
Query: 162 CCLWF**RMAGKLFADHKLESCYCIHG----------DASRIAVIDSLILLQTLLIPC*R 211
L +AG DH + Y ++ D+ I+ + T I
Sbjct: 233 EFL-----LAG---TDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSI---- 280
Query: 212 IITGSENGMINLVGILPNRIIEPIAE-HSEYPVERLAFSHDRKFLGSIGHDQMLKLWDL 269
IT S++G I L + + + I H + V F+ D++F+ S G D +KLW++
Sbjct: 281 YITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWEI 339
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 8/115 (6%)
Query: 11 DIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVL 70
D+DFHP ++ S D + + +S R +V T + R+ F G +L
Sbjct: 181 DLDFHPRSTILISSAKDNCIKFFDFSKTTAK----RAFKVFQDTHNVRSISFHPSGEFLL 236
Query: 71 TGSPDFSILATDVETGSTIARL---DNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G+ DV T D+ A+N++ + T S + DG I+
Sbjct: 237 AGTDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIR 291
>At5g42010 putative protein
Length = 709
Score = 36.2 bits (82), Expect = 0.026
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 246 LAFSHDRKFLGSIGHDQMLKLWDLDNILQGSRSTQRNETGVVAND--------GDSDDGD 297
+ FSHD K+L S G D ++++W NI++ R + NE V +D D +
Sbjct: 263 MKFSHDGKYLASAGEDCVVRVW---NIIEDER--RDNEFEVAESDSSCVYFGMNDKSQIE 317
Query: 298 EMDVDNSASKFSKGNKRKNASNGHAVGDSNNF 329
+ +N + S+G RK + + AV S F
Sbjct: 318 PLKTENEKIEKSRGLLRKKSESTCAVLPSKVF 349
>At5g08390 katanin p80 subunit - like protein
Length = 823
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
++FHP ASG +D +L ++ + HT RF GR +++
Sbjct: 200 VNFHPFGEFFASGSLDTNLKIWDIRKKGC------IHTYKGHTRGVNVLRFTPDGRWIVS 253
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G D + D+ G + +HE + L + E +A+G D +K
Sbjct: 254 GGEDNVVKVWDLTAGKLLHEF-KSHEGKIQSLDFHPHEFLLATGSADKTVK 303
Score = 31.2 bits (69), Expect = 0.82
Identities = 23/77 (29%), Positives = 41/77 (52%), Gaps = 6/77 (7%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGH-DQMLKLWDLD 270
I++G E+ ++ + + +++ H E ++ L F H +FL + G D+ +K WDL+
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKSH-EGKIQSLDF-HPHEFLLATGSADKTVKFWDLE 308
Query: 271 NI-LQGSRSTQRNETGV 286
L GS T+ TGV
Sbjct: 309 TFELIGSGGTE--TTGV 323
>At5g05570 putative protein
Length = 1124
Score = 34.3 bits (77), Expect = 0.097
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDN 271
+ G+ +G I ++G + I +A + P + L F ++ FL SI ++ +++WDLD
Sbjct: 59 LAVGTLDGRIKVIG--GDNIEAILASPKQLPFKNLEFMQNQGFLVSISNENEIQVWDLD- 115
Query: 272 ILQGSRSTQRNETGVVA 288
L+ S+ + E+ + A
Sbjct: 116 -LRQPASSLKWESNITA 131
>At3g18060 WD40-repeat protein
Length = 609
Score = 34.3 bits (77), Expect = 0.097
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 3 INLGKLAFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARF 62
INLG + + P G DG LHLY + D+ + VLE H
Sbjct: 444 INLGFIVTALAVTPDGTEAVIGGQDGKLHLYSINGDSLTEE--AVLERH----------- 490
Query: 63 INGGRAVLTGSPDFSILAT-DVETGSTI-------ARLDNA--HEAAVNRLINLTEST-V 111
G +V+ SPD S+ A+ D+ + + +L N H A +N L ST V
Sbjct: 491 -RGAISVIRYSPDLSMFASADLNREAVVWDRVSREMKLKNMLYHSARINCLAWSPNSTMV 549
Query: 112 ASGDDDGCI 120
A+G D C+
Sbjct: 550 ATGSLDTCV 558
>At5g52250 unknown protein
Length = 385
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 6 GKLAFDIDFHP-SENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFIN 64
G ++F P + +A G D + ++Y DP+ VL+ HT++ ARF++
Sbjct: 212 GAAICSVEFDPFGGSSIAVGCADRNAYVYDI---RRLVDPLIVLD--GHTKTVTYARFMD 266
Query: 65 GGRAVLTGSPDFSILATDVETGSTIARLDNAH 96
++TGS D S+ D++ G + R H
Sbjct: 267 S-HTIVTGSTDGSLKQWDIDNGRRVVRTYRGH 297
>At4g02730 putative WD-repeat protein
Length = 333
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/92 (22%), Positives = 40/92 (42%), Gaps = 6/92 (6%)
Query: 10 FDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAV 69
F ++F+P NL+ SG D + ++ + V + AH+ + F G +
Sbjct: 132 FCVNFNPPSNLIVSGSFDETIRIWEVKTGKC------VRMIKAHSMPISSVHFNRDGSLI 185
Query: 70 LTGSPDFSILATDVETGSTIARLDNAHEAAVN 101
++ S D S D + G+ + L + AV+
Sbjct: 186 VSASHDGSCKIWDAKEGTCLKTLIDDKSPAVS 217
Score = 32.3 bits (72), Expect = 0.37
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 212 IITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWD 268
I++GS + I + + + + I HS P+ + F+ D + S HD K+WD
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMIKAHS-MPISSVHFNRDGSLIVSASHDGSCKIWD 198
Score = 31.6 bits (70), Expect = 0.63
Identities = 19/101 (18%), Positives = 47/101 (45%), Gaps = 5/101 (4%)
Query: 14 FHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARF-INGGRAVLTG 72
F P+ + +D L L Y++ ++V H + C + F + G+ +++G
Sbjct: 221 FSPNGKFILVATLDSTLKLSNYATGKF----LKVYTGHTNKVFCITSAFSVTNGKYIVSG 276
Query: 73 SPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVAS 113
S D + D++ + + RL+ +A ++ + ++ ++S
Sbjct: 277 SEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISS 317
Score = 28.9 bits (63), Expect = 4.1
Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 44 PVRVLEV-HAHTESCRAARFINGGRAVLTGSPDFSILATDVETGSTIARLDNAHEAAVNR 102
P L+V HT F +++GS D +I +V+TG + R+ AH ++
Sbjct: 117 PYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCV-RMIKAHSMPISS 175
Query: 103 L-INLTESTVASGDDDGCIKTLLLHLTQ*KYWPQVETGLFLFAIFDEIKSKPNLNFLKMS 161
+ N S + S DG K W E G L + D+ P ++F K S
Sbjct: 176 VHFNRDGSLIVSASHDGSC----------KIWDAKE-GTCLKTLIDD--KSPAVSFAKFS 222
Query: 162 CCLWF**RMAGKLFADHKLESCYCIH------------GDASRIAVIDSLILLQTLLIPC 209
GK L+S + G +++ I S +
Sbjct: 223 --------PNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKY-- 272
Query: 210 *RIITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGH-DQMLKLWD 268
I++GSE+ + L + I++ + H++ + + S H D+ +++W
Sbjct: 273 --IVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKTIRIWK 330
Query: 269 LD 270
D
Sbjct: 331 QD 332
>At1g61210
Length = 282
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
++FHP +ASG D +L ++ + H+ RF GR V++
Sbjct: 136 VEFHPFGEFLASGSSDANLKIWDIRKKGC------IQTYKGHSRGISTIRFTPDGRWVVS 189
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G D + D+ G + HE + L + E +A+G D +K
Sbjct: 190 GGLDNVVKVWDLTAGKLLHEF-KFHEGPIRSLDFHPLEFLLATGSADRTVK 239
>At1g11160 hypothetical protein
Length = 974
Score = 33.5 bits (75), Expect = 0.17
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
++FHP +ASG D +L ++ D ++ + HT F GR V++
Sbjct: 55 VEFHPFGEFLASGSSDTNLRVW----DTRKKGCIQTYK--GHTRGISTIEFSPDGRWVVS 108
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G D + D+ G + HE + L + E +A+G D +K
Sbjct: 109 GGLDNVVKVWDLTAGKLLHEF-KCHEGPIRSLDFHPLEFLLATGSADRTVK 158
>At5g64630 FAS2 like protein
Length = 397
Score = 32.7 bits (73), Expect = 0.28
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
I F PS L+ASG G+L +++ TN + H + ++ +++
Sbjct: 70 IRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLIS 129
Query: 72 GSPDFSILATDVETGSTIARLD 93
GS D S + DV GS LD
Sbjct: 130 GSVDNSCIIWDVNKGSVHQILD 151
>At5g16750 WD40-repeat protein
Length = 876
Score = 32.3 bits (72), Expect = 0.37
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 220 MINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNI 272
+IN+V + + I S+ + LA S D K L S GH + +++WDL+ +
Sbjct: 41 VINIVDSTDSSVKSTIEGESD-TLTALALSPDDKLLFSAGHSRQIRVWDLETL 92
>At3g15980 putative coatomer complex subunit
Length = 921
Score = 32.3 bits (72), Expect = 0.37
Identities = 30/112 (26%), Positives = 51/112 (44%), Gaps = 10/112 (8%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDN-TNSDPVRVLEVHAHTESCRAARFINGGRAVL 70
+D HP+E + + L G + ++ Y + T S V L V R+A+FI + V+
Sbjct: 24 VDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPV-------RSAKFIPRKQWVV 76
Query: 71 TGSPDFSILATDVETGSTIARLDNAHEAAVNRL-INLTESTVASGDDDGCIK 121
G+ D I + T + ++ AH + + ++ T V S DD IK
Sbjct: 77 AGADDMYIRVYNYNTMDKV-KVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIK 127
>At2g01330 putative WD-40-repeat protein
Length = 611
Score = 32.3 bits (72), Expect = 0.37
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 28 GDLHLYRYSSDNT----------------NSDPVRVLEVHAHTESCRAARFINGGRAVLT 71
G L + RYS D T + V++ + HT + + + V T
Sbjct: 494 GALTVIRYSPDLTMFASGDANREAVVWDRETKQVKLNNMLFHTARINSLAWSPNNKMVAT 553
Query: 72 GSPDFSILATDVET-GSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIK 121
GS D ++ +V+ S+ NAH VN + + + TVAS +D ++
Sbjct: 554 GSIDTCVIVYEVDKPASSRITARNAHLGGVNAVAFIDDCTVASSGEDASVR 604
>At5g25150 transcription initiation factor IID-associated
factor-like protein
Length = 700
Score = 32.0 bits (71), Expect = 0.48
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 1 MEINLGKLAFDIDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAA 60
+ I G L+ D+D+HP+ N +A+G D + L+ D + VR+ H +
Sbjct: 495 LRIMAGHLS-DVDWHPNCNYIATGSSDKTVRLW----DVQTGECVRIF--IGHRSMVLSL 547
Query: 61 RFINGGRAVLTGSPDFSILATDVETGSTIARL 92
GR + +G D +I+ D+ T I L
Sbjct: 548 AMSPDGRYMASGDEDGTIMMWDLSTARCITPL 579
>At3g05670 unknown protein
Length = 883
Score = 32.0 bits (71), Expect = 0.48
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 21/78 (26%)
Query: 259 GHDQMLKLWDLDNILQGSRSTQRNETGVVANDGDSDDGDE------------------MD 300
G D + L + DN+ S T++ + G ++ + DDGDE +
Sbjct: 195 GEDGKMALEEQDNV---SHETEKEDDGDYEDEDEDDDGDEDFTADEDVSLDEEEEEEIIA 251
Query: 301 VDNSASKFSKGNKRKNAS 318
+ +A K KGNKRK S
Sbjct: 252 CNKNALKVCKGNKRKRRS 269
>At1g71840 unknown protein (At1g71840)
Length = 407
Score = 32.0 bits (71), Expect = 0.48
Identities = 17/62 (27%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Query: 213 ITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFL---GSIGHDQMLKLWDL 269
I+GS++G +++V I+ +++ + H++ VE + FS + + G D+ L +WDL
Sbjct: 258 ISGSKDGSVHIVNIVTGKVVSSLNSHTD-SVECVKFSPSSATIPLAATGGMDKKLIIWDL 316
Query: 270 DN 271
+
Sbjct: 317 QH 318
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 13 DFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHA-HTESCRAARFINGGRAVLT 71
DF P L+ +G D L ++ + + + +++ H HTE + ++
Sbjct: 204 DFTPDGKLICTGSDDASLIVWNPKT----CESIHIVKGHPYHTEGLTCLDINSNSSLAIS 259
Query: 72 GSPDFSILATDVETGSTIARLDNAHEAAVNRLINLTESTVASGDDDGCIKTLLL 125
GS D S+ ++ TG ++ L++ ++ + + +T+ G K L++
Sbjct: 260 GSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLII 313
Score = 28.5 bits (62), Expect = 5.3
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 12 IDFHPSENLVASGLIDGDLHLYRYSSDNTNSDPVRVLEVHAHTESCRAARFINGGRAV-- 69
+D + + +L SG DG +H+ + V +++HT+S +F +
Sbjct: 248 LDINSNSSLAISGSKDGSVHIVNIVTGKV------VSSLNSHTDSVECVKFSPSSATIPL 301
Query: 70 -LTGSPDFSILATDVETGSTIARLDNAHEAAVNRLINL-TESTVASGDDDGCI 120
TG D ++ D++ + R HE V L + T +A+G +G +
Sbjct: 302 AATGGMDKKLIIWDLQ--HSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTV 352
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.141 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,436,482
Number of Sequences: 26719
Number of extensions: 312569
Number of successful extensions: 1616
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1494
Number of HSP's gapped (non-prelim): 152
length of query: 332
length of database: 11,318,596
effective HSP length: 100
effective length of query: 232
effective length of database: 8,646,696
effective search space: 2006033472
effective search space used: 2006033472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148996.16