BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148969.8 - phase: 0 
         (219 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g23920 beta-amylase like protein                                    29  2.2
At1g75350 chloroplast 50S ribosomal protein L31, putative              28  2.9
At1g05470 unknown protein                                              28  2.9
At1g35540 auxin response factor, putative                              27  6.4
At1g33010 hypothetical protein                                         27  6.4
At5g40830 unknown protein                                              27  8.4
At1g30400 AtMRP1                                                       27  8.4

>At3g23920 beta-amylase like protein
          Length = 575

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 32/120 (26%), Positives = 48/120 (39%), Gaps = 16/120 (13%)

Query: 85  WDSVHPC----YTVFHEQTETFSSL---WSEYHDDFRQFLHIYSQDVACYGENLAYFPKG 137
           W S  P     Y  + E T+ F      W+  + DF  FL  YSQ +  +GE +    K 
Sbjct: 323 WGSTGPTDAGHYNNWPEDTQFFKKEGGGWNSEYGDF--FLSWYSQMLLDHGERILSSAKS 380

Query: 138 FIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLA--IQVHHAV 195
             ENM        +S     ++        AP  T G Y T+     +P+A  +  H+A+
Sbjct: 381 IFENM-----GVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHNAI 435


>At1g75350 chloroplast 50S ribosomal protein L31, putative
          Length = 144

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 20/85 (23%), Positives = 34/85 (39%), Gaps = 16/85 (18%)

Query: 24 AFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK---DG 80
          +F  ++ C  +  ++  + A +K  K++  +     + I  R    HPEF    K   +G
Sbjct: 8  SFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNG 67

Query: 81 ELV-------------IWDSVHPCY 92
          ELV             +W   HP Y
Sbjct: 68 ELVMTTGGTKKEYVVDVWSGNHPFY 92


>At1g05470 unknown protein
          Length = 585

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 76  AMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFP 135
           A ++G  + W+S   C     +    F ++W +   + R+  H+ +  V+C G  L    
Sbjct: 303 ANENGYRIPWNSSQYCLVASKQMVGVFLTIWVK--SELRE--HVKNMKVSCVGRGL---- 354

Query: 136 KGFIENMFFVSANPWVSFTSF 156
            G++ N   +S +  +  TSF
Sbjct: 355 MGYLGNKGSISISMLLHQTSF 375


>At1g35540 auxin response factor, putative
          Length = 661

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 123 DVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVA-------NMDNFFAPVFTMGK 175
           D+   GE + YFP+G IE    VS+    SF+   L+++       ++    +P      
Sbjct: 38  DIPKLGEKVYYFPQGHIE---LVSSLSLYSFSLLSLSLSLSLSLSLSLSLSLSPFSLFSL 94

Query: 176 YYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 213
           +      + + L++ + H           LNELQ  CD
Sbjct: 95  FSLSPLSLSLSLSLLLSHVEAS---TREELNELQPICD 129


>At1g33010 hypothetical protein
          Length = 361

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 13/31 (41%), Positives = 15/31 (47%)

Query: 111 DDFRQFLHIYSQDVACYGENLAYFPKGFIEN 141
           D   +F    S D+  Y   L YFPK  IEN
Sbjct: 64  DFHMKFSEDMSHDIYSYASGLIYFPKMLIEN 94


>At5g40830 unknown protein
          Length = 414

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 14/48 (29%), Positives = 24/48 (49%)

Query: 1   MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTV 48
           MEK+I GY ++D+SQ    +  + F    Q    +  +  IT  + +V
Sbjct: 85  MEKQIIGYESLDLSQQEVPQELKLFLQQHQLPLGKDSRTGITQMVASV 132


>At1g30400 AtMRP1
          Length = 1622

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 15/52 (28%), Positives = 25/52 (47%)

Query: 52  KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFS 103
           + K++  F+ +LA    A P FR+ M+   L +  +  P Y  F    E F+
Sbjct: 69  RSKWFSYFLALLAAYATAEPLFRLVMRISVLDLDGAGFPPYEAFMLVLEAFA 120


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,103,066
Number of Sequences: 26719
Number of extensions: 203006
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 7
length of query: 219
length of database: 11,318,596
effective HSP length: 95
effective length of query: 124
effective length of database: 8,780,291
effective search space: 1088756084
effective search space used: 1088756084
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)