BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148819.3 + phase: 0 /pseudo/partial
         (880 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g28430 unknown protein                                             511  e-145
At4g14460 retrovirus-related like polyprotein                          33  0.54
At1g10050 putative xylan endohydrolase                                 31  2.7
At5g57630 CBL-interacting protein kinase 21 (CIPK21)                   31  3.5
At5g06600 ubiquitin carboxyl-terminal hydrolase                        30  4.5

>At3g28430 unknown protein
          Length = 671

 Score =  511 bits (1315), Expect = e-145
 Identities = 270/456 (59%), Positives = 337/456 (73%), Gaps = 2/456 (0%)

Query: 29  MEKQVVGDFVRILKLSRTISIPLQLLQTVSIMIQNLQSEHAIYYMFSNEHMNYLITYSFD 88
           MEKQV+G+FVRIL++S+T+++ +QLLQT+SIMIQNL+SE AIYY+FSNE++NYLITY+FD
Sbjct: 1   MEKQVMGEFVRILRVSKTVTVSVQLLQTMSIMIQNLKSEQAIYYLFSNEYVNYLITYTFD 60

Query: 89  FRNEELLSYYISFLRAIGGKLNKNTISLLVKTRNDEVVSFPLYVEAIRFAFHEESMIRAA 148
           F++EELLSYYISFLRA+ GKLNK+TISLL+KT ND VVSFPLYVE I+FAFHEE+MIR A
Sbjct: 61  FQHEELLSYYISFLRAVSGKLNKHTISLLLKTENDVVVSFPLYVEGIQFAFHEENMIRTA 120

Query: 149 VRAVTLNVYHVGDDSVNRYITSEPHTDYFSNLVSFFRKQCMDLNRLISETLKNPGPDSNS 208
           VRA+TLNVYHVGD+SVN Y+ S PHT+YFS L+SFF+KQCMDL+ ++  TLK+P PDS  
Sbjct: 121 VRALTLNVYHVGDESVNDYVVSPPHTEYFSKLISFFQKQCMDLSAMVLNTLKSPSPDSGG 180

Query: 209 TVTTAVDEIEDNLYYFSDIISAGIPDVERLITDSILMLLIFPVLLPSLRTVADNDMQSGV 268
            + +AVD IED LYYFSD+ISAGIPD+ RLITD IL  L  P+LLPSL + AD  +    
Sbjct: 181 KLFSAVDGIEDTLYYFSDVISAGIPDIGRLITDHILQHLTLPLLLPSLCSEADISVDP-- 238

Query: 269 VTSLYLLCCILRIVKIKDLANTIVAALYYPLESFTKCSGGQVNGYIPDHGFTSKSDGIDN 328
           VTSLYLL CILRIVKIKDLAN   A L+ P+++F   S  + N  +   G T  +   D 
Sbjct: 239 VTSLYLLSCILRIVKIKDLANMTAATLFCPVKAFISSSLVKPNSSLAPEGLTYVNGHPDK 298

Query: 329 DNLAENSAKCLVVNVPCSSSSSDCHPQSITILNNGSSSNVALREVLLEYVTGGADVQVLG 388
               E + +C       S   +       T  +  ++S++  RE LL+Y++ G DVQ  G
Sbjct: 299 GVTEEANQQCSSTAAGMSDDGNSHLCSEDTPKSIFNNSHMTFRETLLQYISEGDDVQAQG 358

Query: 389 SLSVLATLLQTKELDESMLDGLGILPQRKQQKKLLLQALVGEASGEEQLFSSESSLTRDG 448
           SL VLATLLQTKEL+ESMLD  GILPQRKQ KKLLLQ+LVGE +GEEQLFS  +   RDG
Sbjct: 359 SLFVLATLLQTKELEESMLDAFGILPQRKQHKKLLLQSLVGEDTGEEQLFSPRNGSMRDG 418

Query: 449 IACGLDVYLNKIKEQYGVSFQPSNVVSSPRVPRFQV 484
           ++  LD YL +++EQ+GV          PRV R QV
Sbjct: 419 LSSELDWYLRRLEEQFGVCCSLPGAARCPRVHRHQV 454



 Score =  249 bits (635), Expect = 6e-66
 Identities = 123/195 (63%), Positives = 149/195 (76%), Gaps = 6/195 (3%)

Query: 662 LVKVFVLLHQLQIFTHGRALPDQPLIYHPCDHRTNSRAHTSGL-AAVPKPGTEMNLVNAV 720
           L++VFVLLHQLQIF+ GR+LP+QP IY P D    SRA  +GL  +VPKPGTE+ LV+AV
Sbjct: 475 LIRVFVLLHQLQIFSLGRSLPEQPPIYPPADRSETSRATRAGLDVSVPKPGTELKLVDAV 534

Query: 721 PCRIAFERGKERHFCFLAISVGTSGWLVLAEELPLKKPYGVVRVAAPLAGCNPRVDDKHS 780
           PCRIAFERGKER F FLA+S G SGW+VLA+        G+VRV APLAGC PR+D+KH 
Sbjct: 535 PCRIAFERGKERDFSFLALSSGESGWIVLADP-----DNGIVRVTAPLAGCKPRIDEKHP 589

Query: 781 KWLHLRIRPSALPFLDPVKYNRHGKLKTKAFVDGRWILAFRDEESCKNAFLMIREEINHL 840
           +WLHLRIRPS LP LDP K   + KLK+K  VDGRWILAFRD+ESC +A+ M+  EI+  
Sbjct: 590 RWLHLRIRPSTLPLLDPTKRGVYEKLKSKGLVDGRWILAFRDDESCHSAYSMVAGEIDLQ 649

Query: 841 CDEVDRRIKPLLKLE 855
           C EV+RR++PL  LE
Sbjct: 650 CSEVERRLRPLFDLE 664


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 764 VAAPLAGCNPRVDDKHSKWLHLRIRPSALPFLDPVKYNRHGKLKTKAFVDGRWILAFRDE 823
           V  P+  C     D   KW HL+ R     FL   K    G  +T+     R IL  +  
Sbjct: 177 VELPVCTCGRCECDAAVKWEHLQQRSRVTKFL---KELNEGFDQTR-----RHILMLKPI 228

Query: 824 ESCKNAFLMIREEINHLCDEVDRRIKPLLKLETVLDISSSSAPVSEDSSSH 874
            + K AF M+ +      DE  R +KPL ++++V     +++ ++ED +++
Sbjct: 229 PTIKEAFNMVTQ------DERQRNVKPLTRVDSV--AFQNTSMINEDENAY 271


>At1g10050 putative xylan endohydrolase
          Length = 1063

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 314 IPDHGFTSKSDGIDNDNLAENSAKCLVVNVPCSSSSSDCHPQSITILNNGSSSNVALREV 373
           I +H F   SDG+ + N   N     VV      SS+DC+ +S  ++NN S +   L + 
Sbjct: 185 IKNHDF---SDGLYSWNT--NGCDSFVV------SSNDCNLESNAVVNNRSETWQGLEQD 233

Query: 374 LLEYVTGGADVQVLGSLSVLATLLQTKEL 402
           + + V+ G   +V  S+SV   +L + ++
Sbjct: 234 ITDNVSPGFSYKVSASVSVSGPVLGSAQV 262


>At5g57630 CBL-interacting protein kinase 21 (CIPK21)
          Length = 416

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 1/68 (1%)

Query: 692 DHRTNSRAHTSGLAAVPKPGTEMNLVNAVPCRIAFERGKERHFCFLAISVGTSGWLVLAE 751
           D + N +    GL+AVPK G  ++     PC IA E    + +   A+ V + G ++L E
Sbjct: 143 DSKGNLKVSDFGLSAVPKSGDMLSTACGSPCYIAPELIMNKGYSGAAVDVWSCG-VILFE 201

Query: 752 ELPLKKPY 759
            L    P+
Sbjct: 202 LLAGYPPF 209


>At5g06600 ubiquitin carboxyl-terminal hydrolase
          Length = 1126

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 14/70 (20%)

Query: 67  EHAIYYMFSNEHMNYLITYSFDFRNEELLSYYISFLRAIGGKLNKNTISLLVKTRNDEVV 126
           E  I  +F   HMNY+   + DF++    S+Y               + L VK   D   
Sbjct: 312 EGTIQQLFEGHHMNYIECINVDFKSTRKESFY--------------DLQLDVKGCKDVYA 357

Query: 127 SFPLYVEAIR 136
           SF  YVE  R
Sbjct: 358 SFDKYVEVER 367


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,572,885
Number of Sequences: 26719
Number of extensions: 840354
Number of successful extensions: 2035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 9
length of query: 880
length of database: 11,318,596
effective HSP length: 108
effective length of query: 772
effective length of database: 8,432,944
effective search space: 6510232768
effective search space used: 6510232768
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)