BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148775.2 + phase: 0 /pseudo
         (267 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g59850 cytoplasmic ribosomal protein S15a - like                    28  3.9
At3g46040 cytoplasmic ribosomal protein S15a -like                     28  3.9
At1g07770 Putative 40S ribosomal protein S15A                          28  3.9

>At5g59850 cytoplasmic ribosomal protein S15a - like
          Length = 130

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 3/48 (6%)

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 46  YIGEFEYVDDHR--SGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91


>At3g46040 cytoplasmic ribosomal protein S15a -like
          Length = 130

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 3/48 (6%)

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 46  YIGEFEYVDDHR--SGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91


>At1g07770 Putative 40S ribosomal protein S15A
          Length = 130

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 3/48 (6%)

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 46  YIGEFEYVDDHR--SGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.369    0.169    0.685 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,331,453
Number of Sequences: 26719
Number of extensions: 194758
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 3
length of query: 267
length of database: 11,318,596
effective HSP length: 98
effective length of query: 169
effective length of database: 8,700,134
effective search space: 1470322646
effective search space used: 1470322646
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 59 (27.3 bits)