BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.5 + phase: 0
(569 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31520 putative non-LTR retroelement reverse transcriptase 196 2e-50
At2g17910 putative non-LTR retroelement reverse transcriptase 194 1e-49
At2g25550 putative non-LTR retroelement reverse transcriptase 194 1e-49
At1g47910 reverse transcriptase, putative 186 2e-47
At3g45550 putative protein 185 5e-47
At2g07650 putative non-LTR retrolelement reverse transcriptase 180 2e-45
At2g31080 putative non-LTR retroelement reverse transcriptase 178 6e-45
At3g32110 non-LTR reverse transcriptase, putative 177 1e-44
At1g31030 F17F8.5 173 2e-43
At2g45230 putative non-LTR retroelement reverse transcriptase 171 1e-42
At1g25430 hypothetical protein 171 1e-42
At3g44650 putative protein 169 3e-42
At2g41580 putative non-LTR retroelement reverse transcriptase 166 2e-41
At2g15510 putative non-LTR retroelement reverse transcriptase 166 3e-41
At4g09710 RNA-directed DNA polymerase -like protein 163 3e-40
At4g08830 putative protein 162 4e-40
At2g01840 putative non-LTR retroelement reverse transcriptase 161 1e-39
At1g24640 hypothetical protein 159 4e-39
At2g23880 putative non-LTR retroelement reverse transcriptase 155 4e-38
At1g51750 hypothetical protein 148 7e-36
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 196 bits (499), Expect = 2e-50
Identities = 153/544 (28%), Positives = 244/544 (44%), Gaps = 43/544 (7%)
Query: 20 GEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSW 78
G ++HLQFADD+L + + N + ++ V + E SG K+N KSM+T G + S
Sbjct: 828 GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGST 887
Query: 79 LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLI 138
S+ +L YLGLP +K ++ ++DR+ R S+W+ ++LS G+ I
Sbjct: 888 QSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEI 947
Query: 139 LLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQG 198
+LKSV ++PVY +S FK P GI+S IES+ +W R I WV W + +G
Sbjct: 948 MLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1007
Query: 199 GLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMI 257
GLG R L +FN +LL K WRL+ N L+ RV+KARY ++ + + + S W
Sbjct: 1008 GLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW--- 1064
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSV 317
++ DG LL R ++G+G+N DN + P + +N E +
Sbjct: 1065 ASLLDGIALL-----KKGTRHLIGDGQNIRIGLDNIVDSHPPR---------PLNTEETY 1110
Query: 318 EDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVN-----LLNNIVL-QDNIQDKWRWLLD 371
++M E G + + W++ + + V+ ++ I L + DK W +
Sbjct: 1111 KEMTINNLFERKGSYYF------WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYN 1164
Query: 372 PILGYTVKGTYCFLTNMEGQVTSGVG---------FDVWHRRVPSKVSLFAWRLLQDRVA 422
YTV+ Y LT+ + +W+ + K+ F WR L +A
Sbjct: 1165 TTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALA 1224
Query: 423 TRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
T L R + D C E+++H C W+L L +
Sbjct: 1225 TTERLTTRGM--RIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFE 1282
Query: 483 QHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFL 542
++ N T S D+ K++ + +W IWK RNN VFN P V K +
Sbjct: 1283 ENISNILNFVQDTTMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD 1341
Query: 543 WLSS 546
WL++
Sbjct: 1342 WLNA 1345
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 194 bits (493), Expect = 1e-49
Identities = 154/550 (28%), Positives = 250/550 (45%), Gaps = 58/550 (10%)
Query: 21 EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTS-- 77
+V ++HL FADDTL++ + + + L ++SG +N NKS +T G N+
Sbjct: 651 KVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIK 710
Query: 78 -WLSEAAAV-LNCKTGLIPFMYLGLP--IGGDERKLCFWKPVLDRISARLSSWNNKYLSS 133
W+ + + L TG YLGLP + G +R L + + +++ +RL+ W K LS
Sbjct: 711 DWIKSRSGISLEGGTG----KYLGLPECLSGSKRDLFGF--IKEKLQSRLTGWYAKTLSQ 764
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GG+ +LLKS+ +LPVY +S FK P + + ++ +W + RKI W+ W + L
Sbjct: 765 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTL 824
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK--EGGRHSS 251
P QGG G + L FN +LL K WR+L +K L+ RV ++RY + G R S
Sbjct: 825 PKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSY 884
Query: 252 RWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAV 311
W ++ GR LL+ +R V+GNG+ TF W D WL D + +R + V
Sbjct: 885 AWRSILF----GRELLM-----QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 935
Query: 312 N-KECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDN----IQDKW 366
+ K + D W R L W++ I+L+ +D +
Sbjct: 936 DLKVSQLIDPTSRNWNLN-----MLRDLFPWKDV----------EIILKQRPLFFKEDSF 980
Query: 367 RWLLDPILGYTVKGTYCFLTN-------MEGQVTSGVG--FD-VWHRRVPSKVSLFAWRL 416
WL Y+VK Y FL+ E +V V FD +W+ K+ +F W+
Sbjct: 981 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1040
Query: 417 LQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV 476
L + L R + +D+ C+ ET++H+ +C +VW + H
Sbjct: 1041 LHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQVW-AITHLSSAGSE 1097
Query: 477 FQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERV 536
F SV + + +L H +L+ + +W +WK RN +F S ++V++
Sbjct: 1098 FSNSVYTNMSRLIDLTQQNDLPH-HLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKA 1156
Query: 537 KLFSFLWLSS 546
W S+
Sbjct: 1157 YEAYHEWFSA 1166
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 194 bits (492), Expect = 1e-49
Identities = 153/544 (28%), Positives = 242/544 (44%), Gaps = 43/544 (7%)
Query: 20 GEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSW 78
G ++HLQFADD+L + + N + ++ V + E SG K+N KSM+T G + S
Sbjct: 1054 GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGST 1113
Query: 79 LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLI 138
S +L YLGLP +K ++ ++DR+ R S+W+ ++LS G+ I
Sbjct: 1114 QSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEI 1173
Query: 139 LLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQG 198
+LKSV ++PVY +S FK P GI+S IES+ +W R I WV W + +G
Sbjct: 1174 MLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1233
Query: 199 GLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMI 257
GLG R L +FN +LL K WRL+ N L+ RV+KARY ++ + + + S W
Sbjct: 1234 GLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW--- 1290
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSV 317
++ DG LL R ++G+G+N DN + P + +N E +
Sbjct: 1291 ASLLDGIALL-----KKGTRHLIGDGQNIRIGLDNIVDSHPPR---------PLNTEETY 1336
Query: 318 EDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVN-----LLNNIVL-QDNIQDKWRWLLD 371
++M E G + + W++ + + V+ ++ I L + DK W +
Sbjct: 1337 KEMTINNLFERKGSYYF------WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYN 1390
Query: 372 PILGYTVKGTYCFLTNMEGQVTSGVG---------FDVWHRRVPSKVSLFAWRLLQDRVA 422
YTV+ Y LT+ + +W+ + K+ F WR L +A
Sbjct: 1391 TTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALA 1450
Query: 423 TRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
T L R + D C E+++H C W L L +
Sbjct: 1451 TTERLTTRGM--RIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFE 1508
Query: 483 QHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFL 542
++ N T S D+ K++ + +W IWK RNN VFN P V K +
Sbjct: 1509 ENISNILNFVQDTTMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD 1567
Query: 543 WLSS 546
WL++
Sbjct: 1568 WLNA 1571
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 186 bits (473), Expect = 2e-47
Identities = 152/523 (29%), Positives = 243/523 (46%), Gaps = 41/523 (7%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSWLSEA 82
+SHL FADD+L + + I +L E VSG ++NF+KS + G + S ++
Sbjct: 460 VSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADI 519
Query: 83 AAVLNCKTGLIPFMYLGLP--IGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILL 140
+L YLGLP +GG + K+ + V DR+ +R++ W+ K+LS GG+ +++
Sbjct: 520 KLILGIHNLGGMGSYLGLPESLGGSKTKVFSF--VRDRLQSRINGWSAKFLSKGGKEVMI 577
Query: 141 KSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGL 200
KSV ++LP Y +S F+ P I S + S K +W SR + W+ WD +C S GGL
Sbjct: 578 KSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGL 637
Query: 201 GVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHS-SRWWRMICN 259
G R + +FN +LL K WRL+ + L+ +V K RY + +S S WR + +
Sbjct: 638 GFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMIS 697
Query: 260 VRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKF-QFSRLFDLAVNKECSVE 318
R LV K + + VG+G + W D W +P +F + ++ V+ V+
Sbjct: 698 ARS----LVYK----GLIKRVGSGASISVWNDPW---IPAQFPRPAKYGGSIVDPSLKVK 746
Query: 319 DMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVL-QDNIQDKWRWLLDPILGYT 377
++ + W LL +E E V L++ + + N++D W YT
Sbjct: 747 SLIDSRSN------FWNIDLL--KELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYT 798
Query: 378 VKGTYCFLTNMEGQVTSGVGFD-------VWHRRVPSKVSLFAWRLLQDRVATRTNLVRR 430
VK Y + T+ +G D +W + P K+ F W++L V NL +R
Sbjct: 799 VKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKR 858
Query: 431 YVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTN 490
+L D CV E+++H QC ++W L P +F + F +
Sbjct: 859 GIL--CDKGCVSCGASEESINHTLFQCHPARQIWAL-SQIPTAPGIFPSN--SIFTNLDH 913
Query: 491 LAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIV 533
L D W+ +W IWK RN VF N+ DP+ I+
Sbjct: 914 LFWRIPSGVDSAPYPWI--IWYIWKARNEKVFENVDKDPMEIL 954
>At3g45550 putative protein
Length = 851
Score = 185 bits (470), Expect = 5e-47
Identities = 149/546 (27%), Positives = 242/546 (44%), Gaps = 35/546 (6%)
Query: 20 GEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSW 78
G ++HLQFADD+L + + N + ++ V + E SG K+N KS++T G + S
Sbjct: 293 GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGST 352
Query: 79 LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLI 138
+ +LN YLGLP +K + ++DR+ R +SW+ K+LS G+ I
Sbjct: 353 QTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEI 412
Query: 139 LLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQG 198
LLKSV ++PVY +S FK P GI+S IES+ +W R I WV W + +G
Sbjct: 413 LLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEG 472
Query: 199 GLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMV--KEGGRHSSRWWRM 256
GLG R L +FN +LL K WR++ N L+ RV+KARY + ++ K + S W +
Sbjct: 473 GLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSL 532
Query: 257 ICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECS 316
+ + L+ K R V+G+G+ DN + P + L + S
Sbjct: 533 LSGI-----ALLRK----GTRYVIGDGKTIRLGIDNVVDSHPPR----PLLTDEQHNGLS 579
Query: 317 VEDMVRAGWEEGGGGWVW-RRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILG 375
++++ ++ G W +L + ++ + + + + + D+ W +
Sbjct: 580 LDNL----FQHRGHSRCWDNAKLQTFVDQSDHDYIKRI--YLSTRSKTDRLIWSYNSTGD 633
Query: 376 YTVKGTYCFLTNMEGQV---------TSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTN 426
YTV+ Y T+ + + +W+ + K+ F WR+L + T
Sbjct: 634 YTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDR 693
Query: 427 LVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFI 486
L R + D C E+++H C W L L + ++ +
Sbjct: 694 LTTRGM--RIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNIS 751
Query: 487 QFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSS 546
L T + D K+I +W IWK RNN VFNNL P V R K + WL++
Sbjct: 752 NILLLLQNTTIT-DSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNA 810
Query: 547 NVASFP 552
P
Sbjct: 811 TQTQGP 816
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 180 bits (457), Expect = 2e-45
Identities = 128/464 (27%), Positives = 211/464 (44%), Gaps = 45/464 (9%)
Query: 18 TRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTS 77
++G +LSH+ FADD ++ E S +R IR VL SG KV+ KS + S +
Sbjct: 195 SQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIF---FSEN 251
Query: 78 WLSEAAAVLNCKTGLIPFM----YLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSS 133
+ +++ ++G+ YLG+P+ + +L++++ RL+ W ++LS
Sbjct: 252 VSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSL 311
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GR+ L K+VLSS+PV+ +S P + ++ + + WG RK + W VC
Sbjct: 312 AGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCK 371
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYG----EIGGMVKEGGRH 249
P S+GGLG+RK + N +LL K WRL+ D + LW R+++ Y G K
Sbjct: 372 PRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVC 431
Query: 250 SSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDL 309
SS W + +R+ +++ + V+G+GR FW D WL ++PL +L
Sbjct: 432 SSTWRSVALGMRE---VVI-----PGLSWVIGDGREILFWMDKWLTNIPLA-------EL 476
Query: 310 AVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNI------- 362
V + AGW +G RR + W+ + ++ N + LQ +
Sbjct: 477 LVQEP-------PAGW-KGMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGA 528
Query: 363 QDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF--DVWHRRVPSKVSLFAWRLLQDR 420
+D+ W + V TY FLT E F VW P +V LF W + Q
Sbjct: 529 RDRISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQA 588
Query: 421 VATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVW 464
+ T RR++ + C G E++ H+ C + +W
Sbjct: 589 IMTNQERHRRHL--STTTICQVCKGAKESIIHVLRDCPAMEGIW 630
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 178 bits (452), Expect = 6e-45
Identities = 153/537 (28%), Positives = 240/537 (44%), Gaps = 48/537 (8%)
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
+++ SV ++P V G +LSH+ FADD ++ E S +R IR VL + SG
Sbjct: 517 LIEASVGKREWKPIAVSCGGS-KLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQ 575
Query: 61 KVNFNKSMVT---GVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLD 117
KV+ KS + V+ L + + C L YLG+PI + VL+
Sbjct: 576 KVSLEKSKIFFSHNVSREMEQLISEESGIGCTKEL--GKYLGMPILQKRMNKETFGEVLE 633
Query: 118 RISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGC 177
R+SARL+ W + LS GR+ L K+VLSS+PV+ +S P + +++ + WG
Sbjct: 634 RVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGST 693
Query: 178 EVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYG 237
+K + W +C P ++GG+G+R + N +L+ K WRLL DK LW RV++ +Y
Sbjct: 694 MEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY- 752
Query: 238 EIGGM-----VKEGGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDN 292
++GG+ +K R SS W + +R+ VG W V G+G FW D
Sbjct: 753 KVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVG-W-------VPGDGCTIRFWLDR 804
Query: 293 WLGDVPLKFQFSRLFDLAVNKECSVEDM-VRAGWEEGGGGWVWRRRLLAWEEEGVRECVN 351
WL P L +L + E + V A + G GW L E R ++
Sbjct: 805 WLLQEP-------LVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLS 857
Query: 352 LLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF--DVWHRRVPSKV 409
++ + L + + W+ D +TV+ Y L G + F +W P +V
Sbjct: 858 VVVQVFLGNGDEISWKGTQDG--AFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERV 915
Query: 410 SLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCH 469
+F W + Q+ + T VRR++ + A C G ET+ H+ C + +W +
Sbjct: 916 RVFIWLVSQNVIMTNVERVRRHLSENA--ICSVCNGAEETILHVLRDCPAMEPIWRRLLP 973
Query: 470 WLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLAC----VWAIWKERNNCVF 522
F S+ + FTN+ D +K IW +W WK R VF
Sbjct: 974 LRRHHEFFSQSLLEWL--FTNM--------DPVKGIWPTLFGMGIWWAWKWRCCDVF 1020
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 177 bits (450), Expect = 1e-44
Identities = 149/542 (27%), Positives = 244/542 (44%), Gaps = 54/542 (9%)
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
++++S+ + ++P + G RLSH+ FADD ++ E S +R +R VL SG
Sbjct: 1193 LIESSIAAKKWKPIKISQSGP-RLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQ 1251
Query: 61 KVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFM----YLGLPIGGDERKLCFWKPVL 116
KV+ KS + S + L + ++ ++G+ YLG+PI + V+
Sbjct: 1252 KVSLEKSKIY---FSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVI 1308
Query: 117 DRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGG 176
R S+RL+ W + LS GRL L K+VL+S+ V+ +S K P + ++ + + WG
Sbjct: 1309 KRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGS 1368
Query: 177 CEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY 236
+K V W VCLP +GGLG+R N +L+ K WR+L D + LW +V++++Y
Sbjct: 1369 TLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKY 1428
Query: 237 GEIGGMVKEGGRHSSRW----------WRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNT 286
K G H W WR + G GL W + + V+G+GR
Sbjct: 1429 -------KVGDVHDRNWTVAKSNWSSTWRSV-----GVGLRDVIWREQH--WVIGDGRQI 1474
Query: 287 FFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGV 346
FW D WL + P+ LA C+ D+ W +G G W +A V
Sbjct: 1475 RFWTDRWLSETPIADDSIVPLSLA-QMLCTARDL----WRDGTG---WDMSQIA---PFV 1523
Query: 347 RECVNLLNNIVLQDNI---QDKWRWLLDPILGYTVKGTYCFLTNMEG--QVTSGVGFDVW 401
+ L V+ D++ D+ W + +TVK + LTN + Q S + VW
Sbjct: 1524 TDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVW 1583
Query: 402 HRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQA-ADNFCVGGCGIPETVDHLFIQCTSF 460
+ P +V +F W ++ + T + RR++ + C GG E++ H+ C +
Sbjct: 1584 KVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGI---ESILHVLRDCPAM 1640
Query: 461 GRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNC 520
+W + F S+ + MT GS D+ + +A VW WK R +
Sbjct: 1641 SGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGS-DWSTMFAMA-VWWGWKWRCSN 1698
Query: 521 VF 522
+F
Sbjct: 1699 IF 1700
>At1g31030 F17F8.5
Length = 872
Score = 173 bits (439), Expect = 2e-43
Identities = 141/529 (26%), Positives = 226/529 (42%), Gaps = 54/529 (10%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HL FADD +++ + ++ I V K SGL+++ KS + +S E A
Sbjct: 345 LTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIA 404
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
A G +P YLGLP+ + P+L++I R+++W ++ S GR L+KSV
Sbjct: 405 AKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSV 464
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
L S+ ++L+ F+ P I I+ + W G E+S A + WD VC P ++GGLG+R
Sbjct: 465 LWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLR 524
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLW------YRVLKARYGEIGGMVKEGGRHSSRWWRMI 257
L E N K WR++ + N LW Y + K + K+ S WR I
Sbjct: 525 NLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL----KQSTSMGSWIWRKI 580
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWL--GDVPLKFQFSRLFDLAVNKEC 315
+RD V K F R VGNG + FWYD+W G + DL + +E
Sbjct: 581 LKIRD-----VAKSFS---RVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREA 632
Query: 316 SVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNI--------VLQDNIQDK-- 365
SV D W RR R +LLN I + + +D
Sbjct: 633 SVAD-------------AWTRR------SRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVL 673
Query: 366 WRWLLDPIL-GYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATR 424
WR D ++ + T+ + V+ G VW R K +L W + +R+ T
Sbjct: 674 WRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKG--VWFRHATPKYALCTWLAIHNRLPTG 731
Query: 425 TNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQH 484
+++ + CV +T++HLF C+ VW + GI + H
Sbjct: 732 DRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAK--GIWKTRYSTRWSH 789
Query: 485 FIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIV 533
+ + R + I+ A ++ +W+ERN + + P +++
Sbjct: 790 LLTHISTHFQDRVEGFLTRYIFQATIYHVWRERNGRRHDAAPNTPATVI 838
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 171 bits (432), Expect = 1e-42
Identities = 145/535 (27%), Positives = 241/535 (44%), Gaps = 63/535 (11%)
Query: 19 RGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEK---VSGLKVNFNKSMVT-GVNI 74
RG +SHL FADD++ + +N + ++ ++E+ SG +VN+ KS + G +I
Sbjct: 671 RGAPPISHLLFADDSMFYCK---VNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 75 STSWLSEAAAVLNCKTGLI----PFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKY 130
S E ++ K G+ +YLGLP K+ + DR+ ++ W + +
Sbjct: 728 S----EERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNF 783
Query: 131 LSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDS 190
LS GG+ ILLK+V +LP Y +S FK P I IES+ + +W + R + W W
Sbjct: 784 LSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCH 843
Query: 191 VCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKE--GGR 248
+ P + GGLG +++ FN++LLGK WR++ +K+ L +V K+RY + G R
Sbjct: 844 LSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSR 903
Query: 249 HSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKF-----QF 303
S W ++ + + L+ IR V+GNG W D W+G P K +
Sbjct: 904 PSFAW----KSIYEAQVLI-----KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRS 954
Query: 304 SRLFDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQ 363
+ A N V+D++ G W W L + + N+L +
Sbjct: 955 HLVSQYAANSIHVVKDLLL----PDGRDWNWNLVSLLFPDNTQE---NILALRPGGKETR 1007
Query: 364 DKWRWLLDPILGYTVKGTYCFLTNMEGQVTS----------GVGFDVWHRRVPSKVSLFA 413
D++ W Y+VK Y +T + Q + + +W VP K+ F
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 414 WRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGI 473
WR + + ++ +NL R++ A + CV ETV+HL +C F R+ + +
Sbjct: 1068 WRCVNNCLSVASNLAYRHL--AREKSCVRCPSHGETVNHLLFKC-PFARLTWAISPLPAP 1124
Query: 474 P------CVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVF 522
P +F+ H + + + H L I W+ +W +WK RN+ VF
Sbjct: 1125 PGGEWAESLFR---NMHHVLSVHKSQPEESDHHAL-IPWI--LWRLWKNRNDLVF 1173
>At1g25430 hypothetical protein
Length = 1213
Score = 171 bits (432), Expect = 1e-42
Identities = 154/528 (29%), Positives = 243/528 (45%), Gaps = 47/528 (8%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKS--MVTGVNISTSWLSE 81
+SHL FADD +I + ++ I L SGLKVN +KS + G+N S
Sbjct: 692 ISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN---QLESN 748
Query: 82 AAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLK 141
A A G +P YLGLP+ + ++ ++P+L++I+AR SW NK LS GR+ L+
Sbjct: 749 ANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLIS 808
Query: 142 SVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLG 201
SV+ +++S F P G I IES+ + W G K V W ++CLP S+GGLG
Sbjct: 809 SVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLG 868
Query: 202 VRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGM-VKEGGRHSSRWWRMICNV 260
+R+L E+N +L + WRL V K+ LW + G EGG+ S W+ + ++
Sbjct: 869 LRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSL 928
Query: 261 RD-GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNK-ECSVE 318
R LV K VGNG +WYDNW PL F + D+ + +
Sbjct: 929 RPLAHQFLVCK---------VGNGLKADYWYDNWTSLGPL---FRIIGDIGPSSLRVPLL 976
Query: 319 DMVRAGWEEGGGGWVWRRRL-LAWEEEGVRE--CVNLLNNIVLQDNIQDKWRWLLDPIL- 374
V + + E G WR + + +G+ + C + + +D D++ W ++ L
Sbjct: 977 AKVASAFSEDG----WRLPVSRSAPAKGIHDHLCTVPVPSTAQED--VDRYEWSVNGFLC 1030
Query: 375 -GYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVL 433
G++ T+ + + V S +W + K + W +R+ TR L +
Sbjct: 1031 QGFSAAKTWEAI-RPKATVKSWAS-SIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHI 1088
Query: 434 QAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAG 493
Q+ + CV E+ DHL + C +VW LV + C Q + F ++ L
Sbjct: 1089 QS--DACVLCSFASESRDHLLLICEFSAQVWRLVFRRI---CPRQ----RLFSSWSELLS 1139
Query: 494 MTRGSHD-----YLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERV 536
R S KI+ V+ +W++RNN + N+L P I + V
Sbjct: 1140 WVRQSSPEAPPLLRKIVSQVVVYNLWRQRNNLLHNSLRLAPAVIFKLV 1187
>At3g44650 putative protein
Length = 762
Score = 169 bits (429), Expect = 3e-42
Identities = 135/473 (28%), Positives = 211/473 (44%), Gaps = 41/473 (8%)
Query: 6 VLSNLFQPY-GVGTRG------EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVS 58
VLS L G+G G + L+HL FADD +I+ + ++ I V L K S
Sbjct: 226 VLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWS 285
Query: 59 GLKVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDR 118
GLK++ KS + +S++ ++ + G +P YLGLP+ + P++++
Sbjct: 286 GLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQ 345
Query: 119 ISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCE 178
I R+ SW++++LS GR L+ S++ S ++LS F+ P I IE + W G
Sbjct: 346 IRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTN 405
Query: 179 VSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-- 236
++ K A + W+ VC P S+GGLG+R L E N K WR++ + LW + ++
Sbjct: 406 LNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLK 465
Query: 237 GEIGGMVKEGGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNW--L 294
EI +VKE S W+ I R V K F + VGNG +T FW+D+W L
Sbjct: 466 REIFWIVKENANLGSWIWKKILKYRG-----VAKRF---CKAEVGNGESTSFWFDDWSLL 517
Query: 295 GDVPLKFQFSRLFDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEE--EGVRECVNL 352
G + D+ +++ SV D W RRR +E + E ++
Sbjct: 518 GRLIDVAGIRGTIDMGISRTMSVAD-----------AWTSRRRRHHRQEILNTIEEVLST 566
Query: 353 LNNIVLQDNIQDKWRWLLDPIL---GYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKV 409
+ Q Q + W + ++ K T+ +L +V G VW K
Sbjct: 567 QHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHKG--VWFPHATPKY 624
Query: 410 SLFAWRLLQDRVATRTNLVRRYVLQAAD-NFCVGGCGIPETVDHLFIQCTSFG 461
S W DR+AT +++ + D FC G ET DHLF G
Sbjct: 625 SFCLWLAAHDRLATGARMIKWNRGETGDCTFCRQGI---ETRDHLFFMQLHIG 674
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 166 bits (421), Expect = 2e-41
Identities = 147/547 (26%), Positives = 235/547 (42%), Gaps = 56/547 (10%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT---GVNISTS-WL 79
++HL FADDTL+I + S L I L +SG +N KS +T VN T W+
Sbjct: 405 VNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWI 464
Query: 80 SEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLIL 139
+ + +T YLGLP K + + +++ +RLS W K LS GG+ IL
Sbjct: 465 MNRSGI---QTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDIL 521
Query: 140 LKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGG 199
LKS+ + PVY ++ F+ + + + S+ +W + +KI W+ + LP GG
Sbjct: 522 LKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGG 581
Query: 200 LGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK--EGGRHSSRWWRMI 257
G + L FN +LL K RL D + L ++LK+RY + +G R S W ++
Sbjct: 582 FGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSIL 641
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWL-GDVPLKFQFSRLFDLAVNKECS 316
GR LLV +++++GNG NT+ W DNW+ D P + + ++ K
Sbjct: 642 Y----GRELLV-----SGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQ 692
Query: 317 VEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGY 376
+ D W R L W+E + ++ + QD + W Y
Sbjct: 693 LIDPFSRNWNLN-----MLRDLFPWKE------IQIICQQRPMASRQDSFCWFGTNHGLY 741
Query: 377 TVKGTY----------CFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTN 426
TVK Y F E + + +W+ K+ +F W++L+ VA
Sbjct: 742 TVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDR 801
Query: 427 LVRRYVLQAADNFCVGGCGI----PETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
L R VL GC + ET++H+ QC +VW L + G
Sbjct: 802 LRTRGVL------IEDGCSMCPEKNETLNHILFQCPLARQVWALT----PMQSPNHGFGD 851
Query: 483 QHFIQFTNLAGMTRGSH--DYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFS 540
F ++ G + +L+ + +W +WK RN +F + S LSIV +
Sbjct: 852 SIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDC 911
Query: 541 FLWLSSN 547
WL ++
Sbjct: 912 KEWLKAH 918
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 166 bits (420), Expect = 3e-41
Identities = 131/451 (29%), Positives = 201/451 (44%), Gaps = 48/451 (10%)
Query: 115 VLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFW 174
+ D++ +RLS W + LS GG+ ILLK+V ++ VY +S FK ++ S +W
Sbjct: 544 IKDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTTCKNLTSAMSDFWW 603
Query: 175 GGCEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKA 234
E RK WV W+ +CL GGLG R + FN +LL K WR+L + L+ R K+
Sbjct: 604 NALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYPSFLFARFFKS 663
Query: 235 RYGEIGGMVKE--GGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDN 292
RY + ++ G R S C++ GR LL +R+ VGNG++ W D
Sbjct: 664 RYFDDEEFLEADLGVRPS----YACCSILFGRELLA-----KGLRKEVGNGKSLNVWMDP 714
Query: 293 WLGDV----PLKFQFSRLFDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRE 348
W+ D+ PL+ FS DL VN + ED W+R LL EE
Sbjct: 715 WIFDIAPRLPLQRHFSVNLDLKVNDLINFEDR------------CWKRDLL--EELFYPT 760
Query: 349 CVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTY--CFLTNMEGQV--------TSGVGF 398
V L+ N+ D W WL Y+VK Y F +N + T+G+
Sbjct: 761 DVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLPSTNGLKE 820
Query: 399 DVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCT 458
VW + K+ +F WR+L + ++RR + + D C E+ +H+ C+
Sbjct: 821 QVWSTKSSPKIKMFLWRILSAALPVADQIIRRGM--SIDPRCQICGDEGESTNHVLFTCS 878
Query: 459 SFGRVWYLVCHWLGIPCV---FQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWK 515
+VW L G+P FQ + IQF D +K W +W +WK
Sbjct: 879 MARQVWAL----SGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWRLWK 934
Query: 516 ERNNCVFNNLASDPLSIVERVKLFSFLWLSS 546
RN F+ + PL+ + +++ + W +
Sbjct: 935 NRNKLFFDGITFCPLNSIVKIQEDTLEWFQA 965
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 163 bits (412), Expect = 3e-40
Identities = 148/550 (26%), Positives = 238/550 (42%), Gaps = 63/550 (11%)
Query: 19 RGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSW 78
RG +++HL FADDT+ + + + +L E SG +N KS +T + +
Sbjct: 612 RGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQD 671
Query: 79 LSEAAAV---LNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGG 135
+ + ++ + G+ YLGLP RK + ++DRI R SW+ ++LSS G
Sbjct: 672 IKRRVKLSLRIDNEGGI--GKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAG 729
Query: 136 RLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPM 195
+ ILLK+VLSS+P Y + FK P + I+S+ + +W RK+AWV WD + LP+
Sbjct: 730 KQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPI 789
Query: 196 SQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMV--KEGGRHSSRW 253
++GGLG R++ K WR+L + + L RVL +Y + +S
Sbjct: 790 NEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHG 842
Query: 254 WRMICNVRDGRGLLVGKWFDDNIRR----VVGNGRNTFFWYDNWLGDVPLKFQFSRLFDL 309
W RG+L G+ D +R+ +G G + W + WL P Q
Sbjct: 843 W---------RGILAGR---DLLRKGLGWSIGQGDSINVWTEAWLS--PSSPQTPIGPPT 888
Query: 310 AVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWL 369
NK+ SV D++ + + R+ L +E++ + +N L +QD WL
Sbjct: 889 ETNKDLSVHDLICHDVKSWNVEAI-RKHLPQYEDQIRKITINAL-------PLQDSLVWL 940
Query: 370 LDPILGYTVKGTYCFLTNMEGQVTSGVGF----DVWHRRVPSKVSLFAWRLLQDRVATRT 425
YT K Y L + S + F ++W KV F W+ ++ +
Sbjct: 941 PVKSGEYTTKTGYA-LAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGE 999
Query: 426 NLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHF 485
L RR + A+ C CG E+ HL + C +VW L P +F S H
Sbjct: 1000 ALSRRNI--EAEVTC-KRCGQTESSLHLMLLCPYAKKVWELA------PVLFNPSEATHS 1050
Query: 486 IQFTNLAGMTR-------GSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKL 538
L R G WL +W +WK RN +F+N + +V + L
Sbjct: 1051 SVALLLVDAKRMVALPPTGLGSAPLYPWL--LWHLWKARNRLIFDNHSCSEEGLVLKAIL 1108
Query: 539 FSFLWLSSNV 548
+ W+ + +
Sbjct: 1109 DARAWMEAQL 1118
>At4g08830 putative protein
Length = 947
Score = 162 bits (411), Expect = 4e-40
Identities = 148/539 (27%), Positives = 226/539 (41%), Gaps = 91/539 (16%)
Query: 18 TRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNIST 76
++G ++SH+ FADD ++ E S +R IR +L SG KV+ +KS + N+S
Sbjct: 347 SQGGPKISHICFADDLILFAEASVSQIRVIRRILETFCIASGQKVSLDKSKIFFSKNVSR 406
Query: 77 SWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGR 136
+ K+ YLG+PI + VL+R+S+RL+ W + LS GR
Sbjct: 407 DLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSLSFAGR 466
Query: 137 LILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMS 196
L L KSVLS +P++ +S P + ++ + + G +K+ V WD VCLP S
Sbjct: 467 LTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKS 526
Query: 197 QGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHSSRWWRM 256
+GGLG+R N +L+ K WRL+ D+ LW R+L+++Y +G ++E SRW
Sbjct: 527 EGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKY-RVG--LREVVSRGSRW--- 580
Query: 257 ICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAV----- 311
VVGNGR+ FW DNWL L + AV
Sbjct: 581 ----------------------VVGNGRDILFWSDNWL-------SHEALINRAVIEIPN 611
Query: 312 -NKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNI----VLQDNI---Q 363
KE V+D+ W G L W+ + + ++ + V+ D++ +
Sbjct: 612 SEKELRVKDL----WANG----------LGWKLDKIEPYISYHTRLELAAVVVDSVTGAR 657
Query: 364 DKWRWLLDPILGYTVKGTYCFLT-NMEGQVTSGVGFD-VWHRRVPSKVSLFAWRLLQDRV 421
D+ W +TVK Y LT + + + FD +W +V F W + V
Sbjct: 658 DRLSWGYSADGVFTVKSAYRLLTEDHDPRPNMAAFFDRLWRVVALERVKTFLWHIGDTSV 717
Query: 422 ATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSV 481
C GG ET+ H+ C S +W + F GS+
Sbjct: 718 C---------------QVCKGG---DETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSL 759
Query: 482 TQHFIQFTNLAGMTRGSHDYL-KIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLF 539
+ NL GM Y ++ VW WK R VF + +RVK F
Sbjct: 760 FGWL--YVNL-GMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVG----KCRDRVKFF 811
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 161 bits (407), Expect = 1e-39
Identities = 144/579 (24%), Positives = 245/579 (41%), Gaps = 93/579 (16%)
Query: 6 VLSNLFQPYGVG--------TRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKV 57
VLSN+ + V T+ + +SHL FADD+L S N+ + + E+
Sbjct: 1012 VLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEA 1071
Query: 58 SGLKVNFNKS-MVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVL 116
SG K+N+ KS ++ G I T +L YLGLP RK+ ++ ++
Sbjct: 1072 SGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIV 1131
Query: 117 DRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGG 176
++ R W YLS G+ I++K++ +LPVY ++ F PT I + I S+ +WG
Sbjct: 1132 TKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG- 1190
Query: 177 CEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY 236
++G LG + L +FN +LL K WR+L + L R+ K Y
Sbjct: 1191 -----------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLY 1233
Query: 237 GEIGGMVKEG-GRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLG 295
++ G H+S W ++++G+ LL +R +G+G+ T W D WL
Sbjct: 1234 YPNTTYLRANKGGHASYGWN---SIQEGKLLL-----QQGLRVRLGDGQTTKIWEDPWLP 1285
Query: 296 DVPLKFQFSRLFDLAVNKECSVEDMVRAGWEEGGGGW--VWRRRLLAWEEEGVRECVNLL 353
+P + + D ++ V D+ W E W V +L E++ + + + L
Sbjct: 1286 TLPPRPARGPILD----EDMKVADL----WRENKREWDPVIFEGVLNPEDQQLAKSLYLS 1337
Query: 354 NNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTN-----------MEGQVTSGVGFDVWH 402
N +D ++W YTV+ Y T+ +EG V + ++W
Sbjct: 1338 NYAA-----RDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVP--LKQEIWR 1390
Query: 403 RRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGR 462
++ K+ F WR L ++T T L R + AD C C ET++H+ C S+ +
Sbjct: 1391 LKITPKIKHFIWRCLSGALSTTTQLRNRNI--PADPTCQRCCNADETINHIIFTC-SYAQ 1447
Query: 463 VWYLVCHWLG-------------IPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLAC 509
V + ++ G I + QG Q+ L W+
Sbjct: 1448 VVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMP-----------FWI-- 1494
Query: 510 VWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNV 548
+W +WK RN +F L P + ++ + + W+ + V
Sbjct: 1495 MWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMV 1533
>At1g24640 hypothetical protein
Length = 1270
Score = 159 bits (402), Expect = 4e-39
Identities = 133/536 (24%), Positives = 225/536 (41%), Gaps = 81/536 (15%)
Query: 26 HLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSWLSEAAA 84
HL FADD+L + + S ++ +L + +G +N NKS +T G +
Sbjct: 641 HLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRT 700
Query: 85 VLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVL 144
L T YLGLP K+ + DR+ +L W + LS GG+ +LLKSV
Sbjct: 701 CLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVA 760
Query: 145 SSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVRK 204
++PV+ +S FK P ++ES +W C+ SRKI W W+ +CLP GGLG R
Sbjct: 761 LAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRD 820
Query: 205 LGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEG-GRHSSRWWRMICNVRDG 263
+ FN +LL K WRLL + L R+LK+RY + + + S WR ++ G
Sbjct: 821 IQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWR---SILFG 877
Query: 264 RGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSR--LFDLAVNKECSVEDMV 321
R LL +++ VG+G + F W D W+ D + + + ++D+ + + +
Sbjct: 878 RELL-----SKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNP-- 930
Query: 322 RAGWEEGGGGWVWRRRLLAWEEEGVREC--------VNLLNNIVLQDNIQDKWRWLLDPI 373
R G+ W+EE + + + + ++ Q D + W L+
Sbjct: 931 RTGF---------------WDEEVLHDLFLPEDILRIKAIKPVISQ---ADFFVWKLNKS 972
Query: 374 LGYTVKGTYCFL-----TNMEGQV-----TSGVGFDVWHRRVPSKVSLFAWRLLQDRVAT 423
++VK Y N+ +V T G+ VW+ + K+ +F W++
Sbjct: 973 GDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKV------- 1025
Query: 424 RTNLVRRYVLQAADNFCVGGCG-IPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
CG + E+ +H C ++W L + GS+
Sbjct: 1026 --------------------CGELGESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIY 1065
Query: 483 QHFIQFTNLAGMTRGSHDYLKII-WLACVWAIWKERNNCVFNNLASDPLSIVERVK 537
+ + KI W+ +W IWK RN+ +F ++ V +++
Sbjct: 1066 SNINHLLENKDNKEWPINLRKIFPWI--LWRIWKNRNSFIFEGISYPATDTVIKIR 1119
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 155 bits (393), Expect = 4e-38
Identities = 133/457 (29%), Positives = 202/457 (44%), Gaps = 47/457 (10%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HL FADD +I+ + +V I VL GLK+ K+ + +S +
Sbjct: 419 LTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMS 478
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
+ + G +P YLGLP+ + P++D+I R+ W ++YLS GRL L+ SV
Sbjct: 479 SRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSV 538
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
L S+ ++++ F+ P I+ I I W G E++ K A V WD +C P +GGLG++
Sbjct: 539 LWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQ 598
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEG----GRHSS--RW-WRM 256
L E N K WRLL ++ LW ++ + + KE G HS+ W WR
Sbjct: 599 SLREANKVSSLKLIWRLLSCQDSLW-----VKWTRMNLLKKESFWSIGTHSTLGSWIWRR 653
Query: 257 ICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPL-KFQFSR-LFDLAVNKE 314
+ R+ V K F + V NG NT FW+DNW PL +R D+ +++
Sbjct: 654 LLKHRE-----VAKSF---CKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRH 705
Query: 315 CSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLL------NNIVLQDNIQDKWRW 368
++ + W RRR E + E +L NI L+D I WR
Sbjct: 706 MTLAE----AWS--------RRRRKRHRVEILNEFEEILLQKYQHRNIELEDAI--LWRG 751
Query: 369 LLDPILG-YTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNL 427
D ++ K T+ + Q G VW K S AW +++R++T +
Sbjct: 752 KEDVFKARFSTKDTWNHIRTSSNQRAWHKG--VWFAHATPKFSFCAWLAIRNRLSTGDRM 809
Query: 428 VRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVW 464
+ CV ET DHLF QC +W
Sbjct: 810 MTWN--NGTPTTCVFCSSPMETRDHLFFQCCYSSEIW 844
>At1g51750 hypothetical protein
Length = 629
Score = 148 bits (374), Expect = 7e-36
Identities = 136/509 (26%), Positives = 215/509 (41%), Gaps = 43/509 (8%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HL FADD +I+ + +V I V+ L K SGL++N K+ + +S
Sbjct: 103 LTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMI 162
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
+ G +P YLGLP+ P+ ++I R+ +W ++YLS GRL L+ SV
Sbjct: 163 SRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSV 222
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
L S +++S F+ P+ + I SI W G E+ R+ A V WD +C P +GGLG+R
Sbjct: 223 LWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLR 282
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY--GEIGGMVKEGGRHSSRWWRMICNVR 261
L E N+ + K WR+ + + LW + K E + S W+ + R
Sbjct: 283 SLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYR 342
Query: 262 DGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSR--LFDLAVNKECSVED 319
+ K F R V NG T FW+DNW G L + DL +++ +V +
Sbjct: 343 E-----TAKPFS---RVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAE 394
Query: 320 MVRAGWEEGGGGWVWRRRLLAWEEE--GVRECVN---LLNNIVLQDNIQDKWRWLLDPI- 373
W RRR E+ + +N N++ +D WR D
Sbjct: 395 -----------AWSNRRRRKHRTEQLNDIEAALNQKYQTRNLLRED--ATLWRGKGDVFK 441
Query: 374 LGYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVL 433
++ K T+ + +V G VW K W L++R++T + +
Sbjct: 442 TSFSTKDTWNQVRKKSNEVAWYKG--VWFSHSTPKYQFCTWLALRNRLSTGYRM--QLWN 497
Query: 434 QAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAG 493
+D C ET DHLF C+ +W + V Q + + N
Sbjct: 498 NGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIA-----KNVLQHRFSTDWQTIVNYIS 552
Query: 494 MTRGS--HDYL-KIIWLACVWAIWKERNN 519
T+ +L + I+ V +WKERN+
Sbjct: 553 ETQTDRIRSFLSRYIFQLTVHTVWKERND 581
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.142 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,014,160
Number of Sequences: 26719
Number of extensions: 632868
Number of successful extensions: 1907
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 166
length of query: 569
length of database: 11,318,596
effective HSP length: 105
effective length of query: 464
effective length of database: 8,513,101
effective search space: 3950078864
effective search space used: 3950078864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148755.5