BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.4 + phase: 1 /partial
(441 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47570 hypothetical protein 544 e-155
At1g67180 hypothetical protein 45 8e-05
At1g03770 hypothetical protein 45 1e-04
At5g05130 helicase-like transcription factor-like protein 42 7e-04
At3g05250 unknown protein 41 0.001
At1g14200 unknown protein 41 0.001
At1g06770 unknown protein 41 0.001
At1g19310 unknown protein 41 0.002
At5g01960 unknown protein 40 0.002
At3g47990 unknown protein 40 0.003
At1g72200 RING-H2 zinc finger protein ATL3, putative 40 0.003
At1g57820 putative transcription factor protein (At1g57820) 40 0.003
At1g57800 hypothetical protein 40 0.003
At5g37270 putative protein 39 0.004
At5g37250 putative protein 39 0.004
At3g55530 unknown protein 39 0.004
At2g26350 zinc-binding peroxisomal integral membrane protein (PE... 39 0.004
At1g18660 unknown protein 39 0.004
At5g44280 putative protein 39 0.006
At5g06490 C3HC4-type RING zinc finger protein-like 39 0.006
>At1g47570 hypothetical protein
Length = 466
Score = 544 bits (1402), Expect = e-155
Identities = 252/439 (57%), Positives = 320/439 (72%), Gaps = 2/439 (0%)
Query: 3 DSRYPDVEIRSDKGQIRSEISTASCDKHRWCKIVRNSDLCSATLKNKSSNTILVDGAEVG 62
D+R+ D+EIR + I SEI +S +KH WC+I +N SAT+ NKSS+ ILVD A V
Sbjct: 28 DTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNLGQSSATIHNKSSDAILVDKAVVP 87
Query: 63 KGDTVVIKDRSEIIPGPAKEGFVSYKFQIVSSPEICQTLLKICVDVDHAKCSICLNIWHD 122
K V I SEI+PGP ++G++ Y+F I+ +PE LL+I +D +HAKCSICLNIWHD
Sbjct: 88 KDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRTQLLQISIDPEHAKCSICLNIWHD 147
Query: 123 VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQFVGKNHFLRTIAEDMVKADS 182
VVT APCLHNFCNGCFSEW+RRS+EK VLCPQCR VQ+VGKNHFL+ I E+++K D+
Sbjct: 148 VVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRTTVQYVGKNHFLKNIQEEILKVDA 207
Query: 183 SLRRSHDEVALLDTYASVRSNLVIGSGKKSRKRERANTTMVNQSDGPDHHCSQCVTVVGG 242
+LRR +++A+LD+ AS++SNL+IGS +K R A T + D C QCV +GG
Sbjct: 208 ALRRPAEDIAVLDSSASIQSNLIIGSKRKRRLNMPAPTH--EERDSLRLQCPQCVANIGG 265
Query: 243 FQCDPSTIHLQCQECGGMMPSRTGLGVPQYCLGCDRPFCGAYWSALGVTGSGSYPVCSPD 302
++C+ HLQC C GMMP R L VP +C GCDRPFCGAYWS+ VT S PVC +
Sbjct: 266 YRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPFCGAYWSSENVTQGVSGPVCVRE 325
Query: 303 TLRPISEHTISGIPLVAHEKNLHEQNITESCIRQMGRTLQDVISEWIAKLNNREIDTTRL 362
T RPISE TI+ IP + HE N HEQ+IT+ CI M +T+ DV++EW+ NNREID +R+
Sbjct: 326 TFRPISERTITRIPFITHEMNRHEQDITQRCIAHMEKTVPDVVAEWLRLFNNREIDRSRM 385
Query: 363 MLNHAEMMTAGTLVCSDCYQKLVSFFLYWFRISTPKHLLPPEASTREDCWYGYACRTQHR 422
LNHAE +TA T VC+DCY KLV F LYWFRI+ P++ LP + + REDCWYGYACRTQH
Sbjct: 386 PLNHAETITASTHVCNDCYDKLVGFLLYWFRITLPRNHLPADVAAREDCWYGYACRTQHH 445
Query: 423 SEEHARKRNHVCRPTRGSH 441
+E+HARKRNHVCRPTRG+H
Sbjct: 446 NEDHARKRNHVCRPTRGNH 464
>At1g67180 hypothetical protein
Length = 453
Score = 45.1 bits (105), Expect = 8e-05
Identities = 34/145 (23%), Positives = 61/145 (41%), Gaps = 25/145 (17%)
Query: 113 CSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQFVGKNHFLRT 172
C IC + + PC H FC C +W R +R CP C++ N T
Sbjct: 300 CIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCKS-------NFITIT 352
Query: 173 IAEDMVKADSSLRRSHDEVALLDTYASVRSNLVIGSGKKSRKRERANTTMVNQSDGPDHH 232
ED ADSS ++ + + S +N+++ ++ +R+ N + ++ G
Sbjct: 353 KIED---ADSSDQKIYSQTV---PDLSSTNNILVVLPEEEEQRQTLNP--LTRASG---- 400
Query: 233 CSQCVTVVGGFQCDPSTIHLQCQEC 257
CS+C + +P + ++C C
Sbjct: 401 CSRC------YLTEPEELLIRCHLC 419
>At1g03770 hypothetical protein
Length = 427
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/58 (41%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 101 LLKICVDVDHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCR 158
L IC DV +CSICL I TV CLH FC C + +R + CP CR
Sbjct: 94 LADICKDV---QCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNE-----CPTCR 143
>At5g05130 helicase-like transcription factor-like protein
Length = 862
Score = 42.0 bits (97), Expect = 7e-04
Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 6/68 (8%)
Query: 91 IVSSPEICQTLLKICVDVDHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRS 150
+ PE+ Q L+ D + C IC++ +++ + C H FC C + L+RS+
Sbjct: 594 VTDKPELLQKLVAALQDGEDFDCPICISPPTNII-ITRCAHIFCRACILQTLQRSKP--- 649
Query: 151 TVLCPQCR 158
LCP CR
Sbjct: 650 --LCPLCR 655
>At3g05250 unknown protein
Length = 278
Score = 41.2 bits (95), Expect = 0.001
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 109 DHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLR----RSQEKRSTVLCPQCR 158
D C ICL + + C H FC C +W++ ++ ++RS+V CP C+
Sbjct: 18 DFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCK 71
>At1g14200 unknown protein
Length = 179
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 113 CSICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCR 158
C+ICL+ W DV PC H F + C EWL R CP CR
Sbjct: 109 CAICLDEWSKGDVAAEMPCKHKFHSKCVEEWLGRH------ATCPMCR 150
>At1g06770 unknown protein
Length = 421
Score = 41.2 bits (95), Expect = 0.001
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 113 CSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQC 157
CSIC NI D T++ CLH FC C E + + + CP C
Sbjct: 16 CSICDNILRDATTISECLHTFCRKCIYEKITEDEIE----TCPVC 56
>At1g19310 unknown protein
Length = 226
Score = 40.8 bits (94), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (54%), Gaps = 4/56 (7%)
Query: 107 DVDHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQ 162
D + +C+ICL++ D + V C H FC C +WL + + CP C+AV++
Sbjct: 17 DSSNFECNICLDLAQDPI-VTLCGHLFCWPCLYKWLHLHSQSKD---CPVCKAVIE 68
>At5g01960 unknown protein
Length = 426
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 113 CSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQ 162
C+IC H + + C H FC C SEW R + CP CRA+V+
Sbjct: 365 CAICQEKMHTPILLR-CKHMFCEDCVSEWFERER------TCPLCRALVK 407
>At3g47990 unknown protein
Length = 341
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 109 DHAKCSICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVV 161
D +C ICL +H V PC HNF C +WLR + V CP+CR V
Sbjct: 214 DCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLN------VKCPRCRCSV 262
>At1g72200 RING-H2 zinc finger protein ATL3, putative
Length = 404
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 9/63 (14%)
Query: 100 TLLKICVDVDHAKCSICLNIWHDVVT---VAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQ 156
T+ + + + +CS+CLN + D T + C H F GC WL RS CP
Sbjct: 131 TVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL------RSHTTCPL 184
Query: 157 CRA 159
CRA
Sbjct: 185 CRA 187
>At1g57820 putative transcription factor protein (At1g57820)
Length = 645
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/53 (37%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 109 DHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVV 161
D+ CS C+ + VT PC HN C CF +W+ Q KR+ C +CR+++
Sbjct: 142 DNLMCSFCMQLPERPVT-KPCGHNACLKCFEKWM--GQGKRT---CGKCRSII 188
Score = 32.7 bits (73), Expect = 0.41
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 112 KCSICLNIWHDVVTVAPCLHNFCNGCF-------------SEWLRRSQEKRSTVLCPQCR 158
KC IC + VT PC HNFC C S R + +++ + CP C
Sbjct: 517 KCQICQQVLTLPVTT-PCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCCP 575
Query: 159 A-VVQFVGKNHFLRTIAEDMVKADSSLRRSHDEVALLD 195
+ F+ R +AE + K L+ ++ A L+
Sbjct: 576 TDISDFLQNPQVNREVAEVIEK----LKTQEEDTAELE 609
>At1g57800 hypothetical protein
Length = 650
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 112 KCSICLNIWHDVVTVAPCLHNFCNGCFSEWL-------------RRSQEKRSTVLCPQCR 158
KC IC + + VT PC HNFC C R+ + ++S + CP C
Sbjct: 517 KCQICQKVMTNPVTT-PCAHNFCKACLESKFAGTALVRERGSGGRKLRSQKSVMKCPCCP 575
Query: 159 A-VVQFVGKNHFLRTIAEDMVK 179
+ +FV R +AE + K
Sbjct: 576 TDIAEFVQNPQVNREVAEVIEK 597
Score = 33.1 bits (74), Expect = 0.31
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 21/70 (30%)
Query: 108 VDHAKCSICLNIWHDVVTV----------------APCLHNFCNGCFSEWLRRSQEKRST 151
+ H +CS C+ V+V PC HN C CF +W+ Q RS
Sbjct: 136 LSHFECSFCMQSLQKPVSVRVLFALALMLVWFLESTPCGHNACLKCFLKWM--GQGHRS- 192
Query: 152 VLCPQCRAVV 161
C CR+V+
Sbjct: 193 --CGTCRSVI 200
>At5g37270 putative protein
Length = 208
Score = 39.3 bits (90), Expect = 0.004
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 11/59 (18%)
Query: 107 DVDHAKCSICLNIW---HD--VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAV 160
D + CSICL + HD ++ + C H F C EWL+R + CP CR V
Sbjct: 147 DEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRS------CPLCRRV 199
>At5g37250 putative protein
Length = 192
Score = 39.3 bits (90), Expect = 0.004
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 11/59 (18%)
Query: 107 DVDHAKCSICLNIW---HD--VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAV 160
D + CSICL + HD ++ + C H F C EWL+R + CP CR V
Sbjct: 131 DEEETTCSICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQRS------CPLCRRV 183
>At3g55530 unknown protein
Length = 273
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 109 DHAKCSICLN--IWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCR 158
D CS+CL ++V PCLH F GC WLR+ CP C+
Sbjct: 207 DELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQG------TCPVCK 252
>At2g26350 zinc-binding peroxisomal integral membrane protein
(PEX10)
Length = 381
Score = 39.3 bits (90), Expect = 0.004
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 112 KCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCR 158
KC++CL+ T PC H FC C EW QE CP CR
Sbjct: 326 KCTLCLST-RQHPTATPCGHVFCWSCIMEWCNEKQE------CPLCR 365
>At1g18660 unknown protein
Length = 486
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/113 (23%), Positives = 51/113 (44%), Gaps = 11/113 (9%)
Query: 49 KSSNTILVDGAEVGKGDTVVIKDRSEIIPGPAKEGFVSYKFQIVSSPEICQTLLKICVDV 108
K+ +L++ EV + DT++ + + GP + + + +S + + D
Sbjct: 136 KACALMLLERYEVAR-DTILSGLQIDPFSGPLRSNLQELEKVMPNSMRKTHGMAERSDDF 194
Query: 109 DHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVV 161
D C++CL + ++ T PC H FC C + + R + CP CR V+
Sbjct: 195 D---CTVCLKLLYEPATT-PCGHTFCRSCLFQSMDRGNK------CPLCRTVI 237
>At5g44280 putative protein
Length = 486
Score = 38.9 bits (89), Expect = 0.006
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 112 KCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCR 158
+C ICL I TV CLH FC C + +R + CP CR
Sbjct: 135 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE-----CPACR 176
>At5g06490 C3HC4-type RING zinc finger protein-like
Length = 197
Score = 38.9 bits (89), Expect = 0.006
Identities = 40/127 (31%), Positives = 51/127 (39%), Gaps = 35/127 (27%)
Query: 47 KNKSSNTILVDGAEV-----GKGDTVVIKD---RSEIIPG----PAKEGFVSYKFQIVSS 94
+ + SN L G E + DTVV++ E+I G P +E VSY Q SS
Sbjct: 65 RQRESNGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESS 124
Query: 95 PEICQTLLKICVDVDHAKCSICLNIWH--DVVTVAP-CLHNFCNGCFSEWLRRSQEKRST 151
C CSICL + D++ V P C H F + C WLR
Sbjct: 125 TTSC--------------CSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHP----- 165
Query: 152 VLCPQCR 158
CP CR
Sbjct: 166 -TCPVCR 171
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,503,023
Number of Sequences: 26719
Number of extensions: 453336
Number of successful extensions: 1275
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 173
length of query: 441
length of database: 11,318,596
effective HSP length: 102
effective length of query: 339
effective length of database: 8,593,258
effective search space: 2913114462
effective search space used: 2913114462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC148755.4