BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148653.1 - phase: 0
(693 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 374 e-104
At2g15410 putative retroelement pol polyprotein 282 4e-76
At3g31530 hypothetical protein 269 4e-72
At2g15100 putative retroelement pol polyprotein 254 9e-68
At2g14400 putative retroelement pol polyprotein 227 1e-59
At1g37200 hypothetical protein 224 1e-58
At2g13060 pseudogene 195 6e-50
At2g06320 putative retroelement pol polyprotein 193 3e-49
At1g37060 Athila retroelment ORF 1, putative 192 7e-49
At2g13230 pseudogene 188 8e-48
At1g36830 hypothetical protein 167 2e-41
At2g11940 putative retroelement gag/pol polyprotein 159 6e-39
At2g12040 T10J7.2 132 8e-31
At2g13330 F14O4.9 130 2e-30
At2g07410 putative retroelement pol polyprotein 117 2e-26
At2g10780 pseudogene 104 1e-22
At4g04060 putative transposon protein 102 7e-22
At2g07660 putative retroelement pol polyprotein 99 8e-21
At4g32220 hypothetical protein 97 4e-20
At4g16910 retrotransposon like protein 94 3e-19
>At1g20390 hypothetical protein
Length = 1791
Score = 374 bits (961), Expect = e-104
Identities = 241/710 (33%), Positives = 362/710 (50%), Gaps = 53/710 (7%)
Query: 1 MLEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIE 60
++EK A+ +A++LR Y SHT +++ P++ P+ +GR+ +W + LSEYDI+
Sbjct: 1116 VIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQSGRMTKWAVELSEYDID 1174
Query: 61 YRSQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLLGEGPDPESRWG 120
+R + A+K +LAD L P++ + EE W
Sbjct: 1175 FRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE-----------------------WS 1211
Query: 121 LIFDGAVNVYGSGIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIKN 180
L DG+ + GSGIG +V+P + + RL F TNN+AEYE I G+ A ++I
Sbjct: 1212 LYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITT 1271
Query: 181 LDIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALAT 240
+ + DS L+ Q++GE+E ++ + Y + + F +L IPR +N ADALA
Sbjct: 1272 IHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAA 1331
Query: 241 LSSMYQVNRWNEVPLIHIRHLERPA--HVFAIEEV-----------VDDKPWFHDIKCFL 287
L+ + +P + +++P+ A+E V D W +I+ +L
Sbjct: 1332 LALTSDSDLRRIIP---VESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL 1388
Query: 288 QRQEYPLGASNKDKKTLRRL---SGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMHEIH 344
P DK T RRL + + L + L K + +L C+ E + +M E H
Sbjct: 1389 SDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETH 1443
Query: 345 EGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSS 404
EG+ G HS G +A K+ + G+YW TM +DC +C +CQ +A IH P L +
Sbjct: 1444 EGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVA 1503
Query: 405 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIIC 464
P+PF W +D++G + AS RFILV DYFTKWVEA SYA + V F+ IIC
Sbjct: 1504 PYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIIC 1561
Query: 465 RYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKM 524
R+G+P IITDNG+ + + C +KI + S+P PQ NG EA NK I ++K
Sbjct: 1562 RHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKR 1621
Query: 525 VVTYKD-WHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELS 583
+ K W + L L YRT+ R++T TPF+ YGMEA+ P EV S+R M +
Sbjct: 1622 LDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNP 1681
Query: 584 EAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQ 643
E + D+L+ +EE R +ALC Q YQ +++KVH R F GDLVL+K+
Sbjct: 1682 ELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENT 1740
Query: 644 PD-SRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEELQRPVNTDAVKKYF 692
+ + GK N+EG Y V K G L TM G + R N+ +K+Y+
Sbjct: 1741 AEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 282 bits (722), Expect = 4e-76
Identities = 167/423 (39%), Positives = 233/423 (54%), Gaps = 21/423 (4%)
Query: 279 WFHDIKCFLQRQEYPLGASNKDKKTLRRL---SGNFFLNGDILYKRNFDMVLLRCVDKHE 335
W +I+ ++ + P KDK RRL S + L + L + + VLL C+D E
Sbjct: 1376 WIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEE 1430
Query: 336 ADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVP 395
A +M EIHEG+ G HS G +A K+ + G YW TM ADC K RC KCQ +A IH+P
Sbjct: 1431 AQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIP 1490
Query: 396 PTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVV 455
L P+PF W +D+I AS ++ILV DYFTKW EA SYA + + V
Sbjct: 1491 SEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARIQSKEVQ 1548
Query: 456 KFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANK 515
F+ +IIC +G+P I+TDNGT + + C +KI S+P PQ NG EA NK
Sbjct: 1549 NFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNK 1608
Query: 516 NIKKIIQKMVVTYKD-WHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSI 574
I ++K + K W + L L YRT+ R ST TPFSL YGMEA+ P E +P++
Sbjct: 1609 TILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTV 1668
Query: 575 R---VLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKE 631
R ++ + L++ Q D L+ +EE+R AL Q YQ+ ++KKV R F E
Sbjct: 1669 RRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAE 1724
Query: 632 GDLVLKKIL--TFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEELQRPVNTDAVK 689
GDLVL+K+ T + D+ GK ++EGPY++ K G L TMDG + R N+ +K
Sbjct: 1725 GDLVLRKVFENTVEQDA-GKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLK 1783
Query: 690 KYF 692
+Y+
Sbjct: 1784 RYY 1786
Score = 67.0 bits (162), Expect = 3e-11
Identities = 37/90 (41%), Positives = 50/90 (55%)
Query: 154 FDCTNNIAEYEACIMGIEEAIDLRIKNLDIYGDSALVINQITGEWETRHPGLVPYKDYAR 213
F +NN AEYEA I G+ A + +K + Y DS LV +Q +G +E ++ + Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 214 RLLTFFNKVELHHIPRDENQMADALATLSS 243
L F EL IPR +N ADALA L+S
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLAS 1279
Score = 52.0 bits (123), Expect = 1e-06
Identities = 25/67 (37%), Positives = 43/67 (63%), Gaps = 1/67 (1%)
Query: 2 LEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEY 61
LEK A+ +A++LR Y S+T +++ P++ I P+ +GR+A+W + LSEYDI Y
Sbjct: 1102 LEKLAFAVVISARKLRPYFKSYTVEVLTNQ-PLRTILHSPSQSGRLAKWAVELSEYDIAY 1160
Query: 62 RSQKAIK 68
+++ K
Sbjct: 1161 KNRTCAK 1167
>At3g31530 hypothetical protein
Length = 831
Score = 269 bits (687), Expect = 4e-72
Identities = 187/611 (30%), Positives = 290/611 (46%), Gaps = 115/611 (18%)
Query: 2 LEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEY 61
+EK A+ +A++LR Y SH+ ++ M P++ I P+ +GR+A+W + LSEYDIEY
Sbjct: 324 MEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRLAKWTIELSEYDIEY 382
Query: 62 RSQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLLGEGPDPESRWGL 121
+++ K +LAD + P ++ + + PL ++ W L
Sbjct: 383 QNKTCAKSQVLADFIVELPTKEAR-------------------ENPL-------DTTWLL 416
Query: 122 IFDGAVNVYGSGIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIKNL 181
DG+ + GSG+G + +P G + TNN+AEYEA + G+ A L+I
Sbjct: 417 HVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALVAGLNLAWGLKIGKT 465
Query: 182 DIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALATL 241
+ DS L+ NQ GE+ T+ + Y + + L F++ EL IPR EN ADALA L
Sbjct: 466 RAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAAL 525
Query: 242 SSMYQVNRWNEVPLIHIR----HLERPAHVFAIEEVVD-DKP------WFHDIKCFLQRQ 290
+S + +P+ I L + HV I+ D D P W I ++
Sbjct: 526 ASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEG 585
Query: 291 EYPLGASNKDK-KTLRRLSGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFG 349
+ P S+K K + L+ + F L LYK L+ CV+ +M EIH GS
Sbjct: 586 KLP---SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSGS-- 640
Query: 350 THSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFS 409
+A IH P L+ ++SP+PF
Sbjct: 641 --------------------------------------HAPTIHQPAELLSSIASPYPFM 662
Query: 410 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVP 469
W +D+IG + P S + +LV DYF+KW+EA SYA++ V F+ HI+CR+G+P
Sbjct: 663 RWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIP 720
Query: 470 SRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYK 529
I+TDNG+ + + CD + I S+P PQ NG EAAN+
Sbjct: 721 YEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEAANE-------------- 766
Query: 530 DWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQ 589
L L +RT+ R +T TPF+ +YG E V+P E+ +PS+R + E ++ + Q
Sbjct: 767 -----LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVPSLRRSLSPE-NDPDNTQ 820
Query: 590 SRYDQLNLIEE 600
+ D+L+LI+E
Sbjct: 821 TPLDELDLIDE 831
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 254 bits (650), Expect = 9e-68
Identities = 170/574 (29%), Positives = 279/574 (47%), Gaps = 78/574 (13%)
Query: 176 LRIKNLDIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMA 235
+R +NL A N+ +GE+E + + Y + R + F + EL IPR EN A
Sbjct: 778 VRSRNLS----DAPTANRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAA 833
Query: 236 DALATLSSMYQVN---------------RWNEVPLIHIRHLERPAHVFAIE--------- 271
+ALA L+S ++V R +E+ + R + R + E
Sbjct: 834 NALAALASTFEVTLPRVIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDD 893
Query: 272 ----------EVVD-------------DKP-------WFHDIKCFLQRQEYPLGASNKDK 301
E+V+ D+P W I+ ++ P A
Sbjct: 894 EEISDAVHPTEIVENQSLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAA 951
Query: 302 KTLRRLSGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKM 361
+ L+ F + DILY+R F C+ + +M E+H+G+ G H+ G ++A K+
Sbjct: 952 RKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKV 1011
Query: 362 LRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEP 421
+ GYYW T+ ADC +A++C +CQ +A I P L +S+P+PF W +D++G +
Sbjct: 1012 RKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHV 1071
Query: 422 KASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLN 481
T+ VEAA+Y+N+T V FI IICR+G+P I+TDNG+
Sbjct: 1072 S---------------TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFI 1116
Query: 482 NKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKD-WHEMLPFALH 540
++ + C++++I +S+P PQ NG EA NK I ++K + YK W L L
Sbjct: 1117 SEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLW 1176
Query: 541 GYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEE 600
RT+ R +T TPFSL+YGMEAV+P E+++PS R + + +E E + D ++ I+E
Sbjct: 1177 AVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDE 1235
Query: 601 KRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQPD-SRGKWTPNYEGPYV 659
+R AL Q Y ++ V R F+ G LVL+++ + + GK ++EGPY
Sbjct: 1236 RRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYK 1295
Query: 660 VKKAYSGGAMTLQTMDGEELQRPVNTDAVKKYFV 693
+ G L M+G+ ++R N+ +K++++
Sbjct: 1296 ITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFYI 1329
Score = 53.5 bits (127), Expect = 4e-07
Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 1 MLEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIE 60
M+EK A+ AA++LR Y SH +++ + P++ I P +GR+ +W + LSE+D+E
Sbjct: 696 MMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSGRLGKWAIELSEFDLE 754
Query: 61 YRSQKAIKGSI 71
+R++ ++ ++
Sbjct: 755 FRARTSLNSTM 765
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 227 bits (579), Expect = 1e-59
Identities = 170/553 (30%), Positives = 252/553 (44%), Gaps = 118/553 (21%)
Query: 189 LVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALATLSSMY--Q 246
+++NQ G++E + + Y + L F K EL IPR +N ADALA L+S +
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 247 VNRWNEVPLIHIRHLERPAHVFA------------------------------------- 269
VN V I R ++ F
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPKPAVQ 909
Query: 270 -------IEEVVDD-------KPWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNFFLNG 315
IEEV+ D +PW + L E+P + LN
Sbjct: 910 ENIGIELIEEVISDAKIEAETEPWVDED--ILAPNEHPEPEA---------------LNS 952
Query: 316 DILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADC 375
LY+R L + +++M E+HEG G+HSSG MA K+ + YYW TM DC
Sbjct: 953 --LYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDC 1010
Query: 376 YKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAID 435
K+A+RC +CQ++A IH P + +S+P+PF W +D+IG + +++ G +++LV D
Sbjct: 1011 VKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTD 1069
Query: 436 YFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIE 495
YF+KW+EA + I+ +G+ K+
Sbjct: 1070 YFSKWIEAEA----------------ILLNWGI------------------------KVS 1089
Query: 496 HHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKD-WHEMLPFALHGYRTSIRTSTGATP 554
+ S+ PQ NG EAANK I ++K + K W++ L L YRT+ R STG TP
Sbjct: 1090 Y--STLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETP 1147
Query: 555 FSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQK 614
FSLVYGM+AV+P E+ +P +R EA L+E E D L+ I E+R AL Q YQ
Sbjct: 1148 FSLVYGMKAVVPAELNVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQH 1206
Query: 615 RMKHAFDKKVHPREFKEGDLVLKKIL-TFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQT 673
++ KV R F GD VLK++ + + GK N+EGPY+V + G L+
Sbjct: 1207 AAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKD 1266
Query: 674 MDGEELQRPVNTD 686
++ +QRP N +
Sbjct: 1267 LEDRPVQRPWNVN 1279
>At1g37200 hypothetical protein
Length = 1564
Score = 224 bits (571), Expect = 1e-58
Identities = 163/558 (29%), Positives = 253/558 (45%), Gaps = 101/558 (18%)
Query: 2 LEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEY 61
+EK A+ +A++LR Y+ SH ++ PI+ I + R+A+W + LSEYDIEY
Sbjct: 951 MEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIRTILHSTTQSSRLAKWAIELSEYDIEY 1009
Query: 62 RSQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLLGEGPDPESRWGL 121
R++ + K +LAD + P+ D +G + +W L
Sbjct: 1010 RTRTSFKAQVLADFVIELPLADL--------------------------DGTNSNKKWLL 1043
Query: 122 IFDGAVNVYGSGIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIKNL 181
DG+ N GSG G + +P G I + RL F+ +NN +EYEA I GI+ A +RI+++
Sbjct: 1044 HVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYEALIDGIKLAQGMRIRDI 1103
Query: 182 DIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALATL 241
+ DS LV +Q GE+E + + Y + + L F EL IPR EN DALA L
Sbjct: 1104 HAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDALAAL 1163
Query: 242 SSMYQVNRWNEVPLIHIRH----------------------------------------- 260
+S +P+ I H
Sbjct: 1164 ASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAAEAG 1223
Query: 261 -LERPAHVFAIEEVVDDKP-----WFHDIKCFLQRQEYPLGASNKDKKTLRRL---SGNF 311
E A + E++ +P W I +++R G + DK R+L S +
Sbjct: 1224 AAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIER-----GITPPDKWETRKLKAQSARY 1278
Query: 312 FLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTM 371
+ L KR+ + C + LM +HEG G+H SG T+ ML
Sbjct: 1279 CIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSGRTLRCIML--------- 1329
Query: 372 EADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGH---R 428
ADC H+ RC KCQ +A +H PP ++ +SSP+PF W +D++ +E AS G +
Sbjct: 1330 -ADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSMDVVRPME--ASGGKKRLK 1386
Query: 429 FILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKEL 488
+LV DY TKW+E ++ VT++ V F+ +I+ R+G+P I+TDNG + K
Sbjct: 1387 NLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIPYEIVTDNGLTSPREKSKH- 1445
Query: 489 CDDFKIEHHNSSPYRPQM 506
F ++ P+ P +
Sbjct: 1446 ---FATSGRSALPHPPPL 1460
Score = 47.8 bits (112), Expect = 2e-05
Identities = 30/98 (30%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 596 NLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQPD-SRGKWTPNY 654
+ I+E+R A+ Q YQ+ ++ + R F+ G+LVL+K+ + + + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 655 EGPYVVKKAYSGGAMTL-QTMDGEELQRPVNTDAVKKY 691
EGPY + + G L + +G RP N +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At2g13060 pseudogene
Length = 930
Score = 195 bits (496), Expect = 6e-50
Identities = 119/373 (31%), Positives = 190/373 (50%), Gaps = 15/373 (4%)
Query: 269 AIEEVVDDKPWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNFFLNGDILYKRNFDMVLL 328
A+ V D PW+ DI +L P ++ +KK R + + LYK ++D +
Sbjct: 128 AVTAVEKDYPWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYR 187
Query: 329 RCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQI- 387
RC+ E ++ H S+G H + K+L+A ++W TM D K +C CQ
Sbjct: 188 RCIAATEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDTQKFISQCDPCQRR 247
Query: 388 --YADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 445
+ R +PP N F WGID +G P SN + +ILV +DY +KWVEA +
Sbjct: 248 GKISKRNEMPP---NFRLEVEVFDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIA 302
Query: 446 YANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQ 505
VV+K K+ I R+GVP +I+D + NK++++L + ++H ++PY PQ
Sbjct: 303 SLKNDSAVVMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQ 362
Query: 506 MNGAVEAANKNIKKIIQKMV-VTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAV 564
+G VE +N+ IK+I++K V K+W L AL Y+T+ +T G TPF L+YG
Sbjct: 363 TSGQVEVSNRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACH 422
Query: 565 LPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKV 624
LP+E+E + + +S D++ R+ A + +LY++R K DKK+
Sbjct: 423 LPVELEHKAAWAVKMMNFDIKSAGESELDEI------RIHAYDNSKLYKERTKAYHDKKI 476
Query: 625 HPREFKEGDLVLK 637
R F+ D +L+
Sbjct: 477 LTRTFEPNDQILR 489
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 46 RIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYL 99
R+ W +LL E+DIE R +K ++ + ADHL+ I+D PI DF EE +Y+
Sbjct: 9 RLLIWILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPIN-DFLPEENIYM 60
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 193 bits (490), Expect = 3e-49
Identities = 126/428 (29%), Positives = 217/428 (50%), Gaps = 17/428 (3%)
Query: 270 IEEVVDDKPWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNFFLNGDILYKRNFDMVLLR 329
+ V PW+ D +L P ++ ++K R +++ + LY D +
Sbjct: 30 LNAVEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYLYTLCKDKIYRS 89
Query: 330 CVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYA 389
V + E + ++ H+ ++G H + K+L+AG++W TM D + +C CQ
Sbjct: 90 YVSEDEVEGILLHCHDSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKG 149
Query: 390 DRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANV 449
+ N + F +WGID +G +S G+++ILV +DY +KWVEA +
Sbjct: 150 NISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYVSKWVEAIASPTN 207
Query: 450 TKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGA 509
+VV+K K I R+GV +I+D G + NK+ + L ++H ++PY PQ +G
Sbjct: 208 DAKVVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQ 267
Query: 510 VEAANKNIKKIIQKMV-VTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIE 568
VE +N+ IK I++K V +T KDW L AL Y+T+ +T G TPF+L+ L +E
Sbjct: 268 VEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVE 327
Query: 569 VEIPSIRV--LMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHP 626
+E ++ L+ ++ AE + R QL+ ++E R+ A ++Y++R K DKK+
Sbjct: 328 LEYKAMWAVKLLNFDIKTAE--EKRLIQLSELDEIRLEAYESSKIYKERTKLFHDKKIIT 385
Query: 627 REFKEGDLVL---KKILTFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEELQRPV 683
++F+ GD VL ++ F + +W+ GP+ + + GA+TL G+ V
Sbjct: 386 KDFQVGDQVLLFNSRLKIFPGKLKSRWS----GPFCITEVRPYGAVTLA---GKSGVFTV 438
Query: 684 NTDAVKKY 691
N +KKY
Sbjct: 439 NGQRLKKY 446
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 192 bits (487), Expect = 7e-49
Identities = 134/434 (30%), Positives = 216/434 (48%), Gaps = 46/434 (10%)
Query: 267 VFAIEEVVDDK-PWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNFFLNGDILYKRNFDM 325
+ AI+++ + K PW+ D +L E P S+ +KK + +F+ + LY D
Sbjct: 1322 LMAIQQLNEKKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDK 1381
Query: 326 VLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKC 385
+ CV + E + ++ H ++G H + K+L+AG++W +M D + +C
Sbjct: 1382 IYRTCVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSF 1441
Query: 386 QIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 445
+ F +WGID +G +S G+++ILVAIDY +KWVEA +
Sbjct: 1442 E--------------------NFDVWGIDFMGPFP--SSYGNKYILVAIDYVSKWVEAIA 1479
Query: 446 YANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQ 505
+VV+K K I R+GVP +I+D G + NK + L ++H S
Sbjct: 1480 SHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS------ 1533
Query: 506 MNGAVEAANKNIKKIIQKMV-VTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAV 564
G VE +N+ IK I++K V T KDW L L YRT+ +T G TPF+L+YG
Sbjct: 1534 --GQVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCH 1591
Query: 565 LPIEVEIPSIRV--LMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDK 622
LP+E+E ++ L+ ++ AE + R QLN + + R+ A ++Y++R K DK
Sbjct: 1592 LPVELEYKAMWAVKLLNFDIKTAE--EKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDK 1649
Query: 623 KVHPREFKEGDLVL---KKILTFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEEL 679
K+ R+FK GD VL ++ F + +W+ GP+ V GA+TL +G+
Sbjct: 1650 KIVSRDFKVGDQVLLFNSRLRLFPGKLKSRWS----GPFSVTAVRPYGAITLAGKNGD-- 1703
Query: 680 QRPVNTDAVKKYFV 693
VN +KKY +
Sbjct: 1704 -FTVNGQRLKKYMI 1716
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/98 (29%), Positives = 54/98 (54%), Gaps = 1/98 (1%)
Query: 3 EKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYR 62
EK A+ +A ++ R Y++ + + +++I+ K R+ RW +LL E+D+E
Sbjct: 1230 EKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIV 1289
Query: 63 SQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLK 100
+K I+ + ADHL+ IED I P+E++M ++
Sbjct: 1290 DKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
>At2g13230 pseudogene
Length = 353
Score = 188 bits (478), Expect = 8e-48
Identities = 121/360 (33%), Positives = 185/360 (50%), Gaps = 33/360 (9%)
Query: 209 KDYARRLLTFFNKVELHHIPRDENQMADALATLSSMYQVNRWNEVPLIHIR----HLERP 264
+D+A++ F++ +L IPR EN ADALA L+S +N +P+ I L++
Sbjct: 9 QDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIELDKV 64
Query: 265 AHVFAIEEVVD-------------DKPWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNF 311
H F I+ V D W I+ F+ +++ L + + L+ + F
Sbjct: 65 EHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVRL--DKWEARKLKAEAARF 122
Query: 312 FLNGDILYKRNFDMVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTM 371
L + L+K L+ CV+K A +M E+H GS G +S G +A K+ R GY+W TM
Sbjct: 123 VLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWPTM 182
Query: 372 EADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFIL 431
DC K CQ A IH+P L+ ++SP+P W +D+IG + AS + +L
Sbjct: 183 IKDCEK-------CQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--ASKQKKLVL 233
Query: 432 VAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDD 491
V DYF+K EA SYA++ + V F+ HI+CR+GVP I+TDNG+ + + CD
Sbjct: 234 VLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCDK 293
Query: 492 FKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYK-DWHEMLPFALHGYRTSIRTST 550
+ I S+P Q NG +AANK I ++K + K W + L L +RT+ R +T
Sbjct: 294 WGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRAT 353
>At1g36830 hypothetical protein
Length = 243
Score = 167 bits (423), Expect = 2e-41
Identities = 94/233 (40%), Positives = 143/233 (61%), Gaps = 7/233 (3%)
Query: 413 IDMIGRIEPKASNGHRFI---LVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVP 469
+D++G +E AS G + + LV DY TKW+EA ++ VT++ V F+ +I+C++G+P
Sbjct: 1 MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58
Query: 470 SRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYK 529
IITDNGTNL ++ +K CD +KI S+P+ PQ NG EAANK I I+K++ + K
Sbjct: 59 YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118
Query: 530 D-WHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWV 588
W ++L L YRT+ R ST TPFSL YG+EAV+PI IPS+R S+
Sbjct: 119 SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177
Query: 589 QSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILT 641
Q D ++ I+E+R A+ Q YQ+ + ++ + R F+ G+LVL+K+ +
Sbjct: 178 QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 159 bits (401), Expect = 6e-39
Identities = 139/550 (25%), Positives = 227/550 (41%), Gaps = 121/550 (22%)
Query: 188 ALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALATLSSM--- 244
A + +G++E + + Y D R L F K EL +PR EN ADALA L+S
Sbjct: 740 ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799
Query: 245 ---------------YQVNRWNEVPLIHIRHLERPAHVFAIEEVVDDKP----------- 278
++ N V R LE A+ ++++ D+
Sbjct: 800 TVRRIISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLVADE 859
Query: 279 --------------WFHDIKCFLQRQEYPLGASNKDKKTLRRLSGNFFLNGDILYKRNFD 324
W I+ ++ P + + L+ F L DILY+R
Sbjct: 860 DSTEYNLPHDWGADWREPIRNYIFNGVLP--TDKWEARKLKATCARFCLADDILYRRIIS 917
Query: 325 MVLLRCVDKHEADLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYK 384
C+ + ++ EIH+G+ G HS G ++A K+ + GY+W TM ADC +A R +
Sbjct: 918 APDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSRR 977
Query: 385 CQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 444
+ SP PF W +D++G + ++ G RF+L+ +WVEAA
Sbjct: 978 -------------TFHFGISPLPFMKWSMDIVGPLH-VSTRGVRFLLL------EWVEAA 1017
Query: 445 SYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRP 504
+Y+ +T+ V FI IICR+G+P I+TDNG ++ K +++I + S+P P
Sbjct: 1018 AYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPRYP 1077
Query: 505 QMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAV 564
Q G VEA V
Sbjct: 1078 Q--GNVEA---------------------------------------------------V 1084
Query: 565 LPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKV 624
+P E+++P R + + +EA + D ++ I+E+R AL Q Y ++ V
Sbjct: 1085 IPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNSNV 1143
Query: 625 HPREFKEGDLVLKKI-LTFQPDSRGKWTPNYEGPYVVKKAYSGGAMTLQTMDGEELQRPV 683
R F G LVL++I GK ++EGPY + G L M+G+ ++R
Sbjct: 1144 RSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNGD-CLINMEGKTVRRAW 1202
Query: 684 NTDAVKKYFV 693
N +K++++
Sbjct: 1203 NAAHLKRFYI 1212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 28/81 (34%), Positives = 52/81 (63%), Gaps = 1/81 (1%)
Query: 1 MLEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIE 60
M+EK A+ AA++LR Y SH +++ + P++ I P +GR+A+W + LSE+++E
Sbjct: 660 MMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPNQSGRLAKWAIELSEFNLE 718
Query: 61 YRSQKAIKGSILADHLAHQPI 81
+ ++ ++K +LAD L P+
Sbjct: 719 FHARTSLKSQVLADFLIELPL 739
>At2g12040 T10J7.2
Length = 976
Score = 132 bits (331), Expect = 8e-31
Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 22/243 (9%)
Query: 408 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYG 467
F WGI+ +G I P SN + +ILV +DY +KWVEA + VV+K K I +G
Sbjct: 569 FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626
Query: 468 VPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVT 527
VP +I+D G + NK++ +L + ++H ++PY PQ +G VE +N+ IK+I++K V
Sbjct: 627 VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684
Query: 528 YKDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEW 587
+ +T G TPF L+YG LP+E+E + +
Sbjct: 685 -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727
Query: 588 VQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQP-DS 646
+ R QLN ++E ++ A + +LY++R K DKK+ R F+ D KK +P
Sbjct: 728 GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787
Query: 647 RGK 649
RGK
Sbjct: 788 RGK 790
Score = 55.8 bits (133), Expect = 8e-08
Identities = 32/97 (32%), Positives = 54/97 (54%), Gaps = 2/97 (2%)
Query: 3 EKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYR 62
EK A+ +A ++ R Y++ + + +KY+ + R+ RW +LL E+DIE R
Sbjct: 285 EKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLMQNKDAKPRLLRWILLLQEFDIEVR 344
Query: 63 SQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYL 99
+K ++ +ADHL+ I+D PI DF EE +Y+
Sbjct: 345 DKKGVE-KCVADHLSRIRIDDDVPIN-DFLPEENIYM 379
>At2g13330 F14O4.9
Length = 889
Score = 130 bits (328), Expect = 2e-30
Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 27/259 (10%)
Query: 2 LEKTCCALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEY 61
+EK + + ++LR Y SH ++ PI+ I +GR+A+W + L EYDIEY
Sbjct: 553 MEKLALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEY 611
Query: 62 RSQKAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLLGEGPDPESRWGL 121
R++ ++K +LAD + P+ D +G + +W L
Sbjct: 612 RTRTSLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLL 645
Query: 122 IFDGAVNVYGSGIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIKNL 181
DG+ N GSG+G + +P G I + +L F+ +NN +EYEA I GI+ A + I+ +
Sbjct: 646 HVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREI 705
Query: 182 DIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADALATL 241
Y DS LV +Q GE+E + + Y + + L F +L IPR EN AD LA L
Sbjct: 706 HAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAAL 765
Query: 242 SSMYQVNRWNEVPLIHIRH 260
+S +P+ I H
Sbjct: 766 ASTSDPFVKRIIPVEGIEH 784
>At2g07410 putative retroelement pol polyprotein
Length = 411
Score = 117 bits (293), Expect = 2e-26
Identities = 88/276 (31%), Positives = 134/276 (47%), Gaps = 44/276 (15%)
Query: 423 ASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNN 482
+S G+++ILVA+DY +KWVEA +VV+K K I R+GV +I+D + N
Sbjct: 6 SSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGRKHFIN 65
Query: 483 KMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIIQKMV-VTYKDWHEMLPFALHG 541
K + L ++H ++ Y PQ +G VE +N+ IK I++K V VT KD L AL
Sbjct: 66 KAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLDDALWA 125
Query: 542 YRTSIRTS----TGATPFSLVYGMEAVLPIEVEIPSIRV--LMEAELSEAEWVQSRYDQL 595
Y+T+ +T+ G TPF+L+Y LPIE+E ++ LM ++ AE + R QL
Sbjct: 126 YKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAE--EERLIQL 183
Query: 596 NLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLKKILTFQPDSRGKWTPNYE 655
N ++E R+ A Y+ + +K+ R F
Sbjct: 184 NDLDEIRLEA------YESSKNYKGKRKLKSRLF-------------------------- 211
Query: 656 GPYVVKKAYSGGAMTLQTMDGEELQRPVNTDAVKKY 691
GP+ V + GA+TL G+ VN +KKY
Sbjct: 212 GPFCVTEIRPYGAVTLAVKSGD---FTVNGQRLKKY 244
>At2g10780 pseudogene
Length = 1611
Score = 104 bits (260), Expect = 1e-22
Identities = 104/455 (22%), Positives = 184/455 (39%), Gaps = 43/455 (9%)
Query: 222 VELHHIPRDENQMADALATLSSMY-----QVNRWNEVPLIHIRHLERPAHVFAIEEVVDD 276
+++ + P NQ+ADAL+ S QV+ N + +H+ L + + D
Sbjct: 1051 LDIAYHPGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEPLGLG-AADQ 1109
Query: 277 KPWFHDIKCFLQRQEYPLG-ASNKDKKTLRRLSGNFFLNGDILYKRNFDMVLLRCVDKHE 335
I+ +R E G A N + +G +NG + CV
Sbjct: 1110 ADLLSRIRLAQERDEEIKGWAQNNKTEYQTSNNGTIVVNGRV------------CVPNDR 1157
Query: 336 A--DLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIH 393
A + ++ E H+ F H M + + R Y+W+ M+ D + +C CQ+
Sbjct: 1158 ALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAEHQ 1216
Query: 394 VPPTALNVLSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE--AASYANVT 450
VP L L P W + +D + + + H + V +D TK A S +
Sbjct: 1217 VPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGA 1276
Query: 451 KQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAV 510
+ + K+I + I+ +G+P I++D T +K K + S+ Y PQ +
Sbjct: 1277 EIIAEKYI-DEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQS 1335
Query: 511 EAANKNIKKIIQKMVVTY-KDWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEV 569
E + ++ +++ V+ + +W + L Y S + S G +P+ +YG P+
Sbjct: 1336 ERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCW 1395
Query: 570 EIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREF 629
R L + + + ++ ++ L E Q R K +K+ EF
Sbjct: 1396 TPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYANKRRKELEF 1443
Query: 630 KEGDLVLKKILTFQP----DSRGKWTPNYEGPYVV 660
+ GDLV K +T++ SR K +P Y GPY V
Sbjct: 1444 QVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 1478
Score = 33.9 bits (76), Expect = 0.31
Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
Query: 8 ALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEY--DIEYRSQK 65
A+ + K R Y+ + + +KYIF +P L R RW L+++Y DI Y K
Sbjct: 1000 AVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGK 1059
Query: 66 A 66
A
Sbjct: 1060 A 1060
>At4g04060 putative transposon protein
Length = 375
Score = 102 bits (254), Expect = 7e-22
Identities = 53/137 (38%), Positives = 79/137 (56%), Gaps = 16/137 (11%)
Query: 365 GYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNVLSSPWPFSMWGIDMIGRIEPKAS 424
GY+W TM A+C H+ RC KCQ +A +H P ++ +SSP+PF W +D++G +E AS
Sbjct: 195 GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSMDVVGPME--AS 252
Query: 425 NGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKM 484
G + + + VT++ V F+ +I+CR+G+P IITDNGTNL +
Sbjct: 253 GGKKKLKNLL--------------VTEKQVEDFLWENIVCRHGIPYEIITDNGTNLTSGK 298
Query: 485 MKELCDDFKIEHHNSSP 501
+K CD KI S+P
Sbjct: 299 IKAFCDKCKIRLTISTP 315
Score = 49.3 bits (116), Expect = 7e-06
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 178 IKNLDIYGDSALVINQITGEWETRHPGLVPYKDYARRLLTFFNKVELHHIPRDENQMADA 237
I+++ + DS LVI+Q GE+E + + Y + + L F EL IPR EN ADA
Sbjct: 3 IRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSADA 62
Query: 238 LATLS 242
LA L+
Sbjct: 63 LAALA 67
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 99.0 bits (245), Expect = 8e-21
Identities = 97/412 (23%), Positives = 168/412 (40%), Gaps = 44/412 (10%)
Query: 261 LERPAHVFAIEEVVDDKPWFHDIKCFLQRQEYPLGASNKDKKTLRRLSGN--FFLNGDIL 318
LE A VFA+ K W + Q ++ + + KT + S N +NG +
Sbjct: 491 LEMAAVVFAL------KIWRSYLIRLAQERDEEIKGWTLNNKTEYQTSNNGTIVVNGRV- 543
Query: 319 YKRNFDMVLLRCVDKHEA--DLLMHEIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCY 376
CV A + ++ E H+ F H M + + R Y+W+ M D
Sbjct: 544 -----------CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVA 591
Query: 377 KHAKRCYKCQIYADRIHVPPTAL-NVLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAID 435
+ +C CQ+ VP L N+ S W + +D + R+ + H + V +D
Sbjct: 592 RWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVD 651
Query: 436 YFTKWVE--AASYANVTKQVVVKFIKNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFK 493
TK A S + + + K+I + I+ +G+P I++D T +K
Sbjct: 652 RLTKSAHFMAISDKDGAEIIAEKYI-DEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALG 710
Query: 494 IEHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYK-DWHEMLPFALHGYRTSIRTSTGA 552
+ S+ Y PQ +G E + ++ +++ V+ + +W + L Y S + S G
Sbjct: 711 TRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGM 770
Query: 553 TPFSLVYGMEAVLPIEVEIPSIRVLMEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLY 612
+P+ +YG P+ R L + + + ++ ++ L E
Sbjct: 771 SPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------ 818
Query: 613 QKRMKHAFDKKVHPREFKEGDLVLKKILTFQP----DSRGKWTPNYEGPYVV 660
Q R K +K+ EF+ GDLV K +T++ SR K +P Y GPY V
Sbjct: 819 QDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At4g32220 hypothetical protein
Length = 452
Score = 96.7 bits (239), Expect = 4e-20
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 29/190 (15%)
Query: 13 AKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRSQKAIKGSIL 72
A++LR Y SH+ ++ P++ + P + RIA+W + LSEYD+EYRS+ ++K +L
Sbjct: 132 ARKLRPYFQSHS--IVFTDQPLRTVLHSPNQSRRIAKWAIELSEYDVEYRSRPSLKSQVL 189
Query: 73 ADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLLGEGPDPESRWGLIFDGAVNVYGS 132
AD + + P D P+ W L DG+ ++ GS
Sbjct: 190 ADFMT-----ELSPDVIDV----------------------IPDENWILYSDGSSSLQGS 222
Query: 133 GIGAIIVTPEGAHIPFTARLTFDCTNNIAEYEACIMGIEEAIDLRIKNLDIYGDSALVIN 192
+G ++ +P + + RL F +NN AEYEA + G+ A L K + + DS LV++
Sbjct: 223 SLGILLQSPTREILEQSLRLQFKASNNEAEYEALLAGLRLAKGLGAKQIKAFSDSQLVVS 282
Query: 193 QITGEWETRH 202
+ +GE+E ++
Sbjct: 283 RFSGEFEAKN 292
>At4g16910 retrotransposon like protein
Length = 687
Score = 94.0 bits (232), Expect = 3e-19
Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 47/447 (10%)
Query: 228 PRDENQMADALATLSSMY-----QVNRWNEVPLIHIRHLERPAHVFAIEEVVDDKPWFHD 282
P NQ+ DAL+ L ++ QVN N + +H+ L + + +
Sbjct: 149 PGKANQVVDALSRLRTVVEAERNQVNLVNMMGTLHLNALSKEVEPLGLR-AANQADLLSR 207
Query: 283 IKCFLQRQEYPLG-ASNKDKKTLRRLSGNFFLNGDILYKRNFDMVLLRCVDKHEADLLMH 341
I+ +R E G A N + +G +NG + DK + ++
Sbjct: 208 IRSAQERDEEIKGWAQNNKTEYQSSNNGTIVVNGRVCGPN----------DKALKEEILK 257
Query: 342 EIHEGSFGTHSSGPTMAKKMLRAGYYWMTMEADCYKHAKRCYKCQIYADRIHVPPTALNV 401
E H+ F H M + + R Y+W+ M+ D + + + VP L
Sbjct: 258 EAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAK--------EEHQVPSGMLQN 308
Query: 402 LSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE--AASYANVTKQVVVKFI 458
L P W + +D + + + H + V +D TK A S + + + K+I
Sbjct: 309 LPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEIIAEKYI 368
Query: 459 KNHIICRYGVPSRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIK 518
+ I+ +G+P I++D T +K K + S+ Y PQ +G E + ++
Sbjct: 369 -DEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLE 427
Query: 519 KIIQKMVVTYK-DWHEMLPFALHGYRTSIRTSTGATPFSLVYGMEAVLPIEVEIPSIRVL 577
+++ V+ + +W + L Y S + S G +P+ +YG P+ R L
Sbjct: 428 DMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRL 487
Query: 578 MEAELSEAEWVQSRYDQLNLIEEKRMSALCHGQLYQKRMKHAFDKKVHPREFKEGDLVLK 637
+ + + ++ ++ L E Q R K +K+ EF+ GDLV
Sbjct: 488 FGPAVVDETTKKMKFLKIKLKEA------------QDRQKSYANKRRKELEFQVGDLVYL 535
Query: 638 KILTFQP----DSRGKWTPNYEGPYVV 660
K +T++ SR K P Y GPY V
Sbjct: 536 KAMTYKGAGRFTSRKKLRPRYVGPYKV 562
Score = 35.8 bits (81), Expect = 0.083
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 8 ALAWAAKRLRHYMISHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYD--IEYRSQK 65
A+ +A K R Y+ + + +KYIF +P L R RW L+++YD I Y K
Sbjct: 92 AVVFALKIWRSYLYGAKVQIFTDHKSLKYIFTQPELNLRQRRWIKLVADYDLNIAYHPGK 151
Query: 66 A 66
A
Sbjct: 152 A 152
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,500,910
Number of Sequences: 26719
Number of extensions: 730458
Number of successful extensions: 1737
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1494
Number of HSP's gapped (non-prelim): 175
length of query: 693
length of database: 11,318,596
effective HSP length: 106
effective length of query: 587
effective length of database: 8,486,382
effective search space: 4981506234
effective search space used: 4981506234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148653.1