BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148652.2 - phase: 0 /pseudo
(1145 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 744 0.0
At3g31530 hypothetical protein 452 e-127
At2g15410 putative retroelement pol polyprotein 394 e-109
At2g13330 F14O4.9 360 2e-99
At2g14400 putative retroelement pol polyprotein 318 1e-86
At2g14380 putative retroelement pol polyprotein 288 1e-77
At1g37200 hypothetical protein 280 4e-75
At4g03800 268 2e-71
At2g15100 putative retroelement pol polyprotein 264 2e-70
At2g10780 pseudogene 264 2e-70
At4g10580 putative reverse-transcriptase -like protein 260 3e-69
At2g04670 putative retroelement pol polyprotein 256 5e-68
At1g37060 Athila retroelment ORF 1, putative 255 9e-68
At2g14650 putative retroelement pol polyprotein 248 1e-65
At2g07660 putative retroelement pol polyprotein 244 2e-64
At3g11970 hypothetical protein 243 5e-64
At1g36590 hypothetical protein 243 5e-64
At1g35370 hypothetical protein 234 2e-61
At2g14040 putative retroelement pol polyprotein 227 3e-59
At2g10690 putative retroelement pol polyprotein 200 3e-51
>At1g20390 hypothetical protein
Length = 1791
Score = 744 bits (1922), Expect = 0.0
Identities = 428/1118 (38%), Positives = 635/1118 (56%), Gaps = 51/1118 (4%)
Query: 40 ELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPT 99
E++N+ + R + VGA + ++ ++ LL+ FAWS EDM G+DP I H +
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 100 KPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 159
P + PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 160 VDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 219
VD+ DL KA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 220 *GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKM 279
GT+CYKVM FGL NAGATY R + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 892 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951
Query: 280 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 339
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 952 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1011
Query: 340 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEG 399
GR+ ++RFIS T C P + LL++ W+ + + AF+ +K+YL PPILV P G
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071
Query: 400 RPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAK 459
L +Y++V D +V VL ++D ++ I+Y SK + ETRY ++EK A+V +A+
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1129
Query: 460 RLRHYLVNHTTWLISRMDQ-IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILA 518
+LR Y +HT +++ DQ ++ P+ + ++ +W + LSEYDI F+ + A+K +LA
Sbjct: 1130 KLRPYFQSHTIAVLT--DQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLA 1187
Query: 519 DHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKG 578
D L PL + E + G + +W L DG +A G G
Sbjct: 1188 DFLIELPL--------------------QSAERAVSG---NRGEEWSLYVDGSSSARGSG 1224
Query: 579 IGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQ 638
IG +VSP + + R+ F TNN+AEYE I G+ A M+I ++ + DS L+ Q
Sbjct: 1225 IGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQ 1284
Query: 639 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDV 698
+ GE+E + K+ Y + + F +L IPR +N ADAL ++ + +D+
Sbjct: 1285 LSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDL 1340
Query: 699 -PIIKVQRLERPS----HVFTIEDMINRADG-NVVDDRPWYYDTKQFLLSREYPPGASNK 752
II V+ +++PS I + I ++ + D W + + +L P
Sbjct: 1341 RRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----S 1395
Query: 753 DKKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 809
DK T RRL A ++ L + L K + +L C+ E ++M + H+G G H+ G
Sbjct: 1396 DKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRA 1455
Query: 810 MSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMI 869
++ KL + G+YW TM DC KC +CQ +A IH P L +P+PF W +D++
Sbjct: 1456 LALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIV 1515
Query: 870 GRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDN 929
G + AS RFILV DY+TKWVEA SYA + V F+ IICR+G+P +IITDN
Sbjct: 1516 GPM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDN 1573
Query: 930 GTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTYKD-WHEML 988
G+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1574 GSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADEL 1633
Query: 989 PYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQL 1048
L YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L
Sbjct: 1634 DGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRL 1692
Query: 1049 NLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPD-PRGKWTPNY 1107
+ +EE R A+ R Q+YQ +++KV R F G+LVL++ + GK N+
Sbjct: 1693 DDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANW 1752
Query: 1108 EGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
EG Y V K G L M G +P N+ +K+Y+
Sbjct: 1753 EGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790
>At3g31530 hypothetical protein
Length = 831
Score = 452 bits (1163), Expect = e-127
Identities = 282/866 (32%), Positives = 446/866 (50%), Gaps = 122/866 (14%)
Query: 193 SFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIH 252
S+ ++ + + M+PED+EKT+F T G FCY+VMPFGL NAGATY R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 253 KEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 312
K +EVY+DDM+VKS E+ H+ +L + F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 313 GIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVW 372
GIE +P ++ A+ M +PQ +++V+ GR+ ++RFIS T C + +LR+N+ W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 373 NDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHAIYY 432
C+ AF +K YL PPIL PV G P +Y++V D +V L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 433 LSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKI 492
+S+ FT E+RY +EK A+V +A++LR Y +H+ ++ M ++ I P+ + ++
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 493 ARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEP 552
A+W + LSEYDI ++ + K +LAD + P + + E P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 553 LIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 612
L D+ W L DG + G G+G + SP G E TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 613 FGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 672
G+ A ++I + DS L+ NQ GE+ T K+ Y + + L F + EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 673 PRDENQMADALGTISSMFRVNHWNDVPIIKVQR----LERPSHVFTIEDMINRADGNVVD 728
PR EN ADAL ++S + +P+ +++ L + HV I+ ++ D + +
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCN 571
Query: 729 DRPWYYDTKQFLLSREYPPGASNKDK-KTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEH 787
W ++ + P S+K K + L+ A RF+L LYK L+ CV+
Sbjct: 572 SE-WMEPIISYISEGKLP---SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAE 627
Query: 788 EAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHV 847
++M ++H G+ +A IH
Sbjct: 628 AICKIMKEIHSGS----------------------------------------HAPTIHQ 647
Query: 848 PPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVV 907
P L+ I+SP+PF W +D+IG + P S + +LV DY++KW+EA SYA++ V
Sbjct: 648 PAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDAQV 705
Query: 908 AKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAAN 967
F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P PQ NG EAAN
Sbjct: 706 ENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEAAN 765
Query: 968 KNIQKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 1027
+ L L +RTT R +T TPF+ +YG E V+P E+ +PSL
Sbjct: 766 E-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVPSL 806
Query: 1028 RVIMEAKLSEAEWCQSRYDQLNLVEE 1053
R + + ++ + Q+ D+L+L++E
Sbjct: 807 RRSLSPE-NDPDNTQTPLDELDLIDE 831
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 394 bits (1013), Expect = e-109
Identities = 203/512 (39%), Positives = 313/512 (60%), Gaps = 30/512 (5%)
Query: 2 FEFPVYEVEDEEGDDIPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAALEE 61
FEF V + I Y + + Q+ + P + + +N+ + R + + L
Sbjct: 686 FEFAVVD------KPIIYNVILVPTQDERP-NPQKGTVVQVNIDESDPSRCVGIRIDLPS 738
Query: 62 GVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKI 121
++ ++ LR+ FAWS EDMPG+D + H + P Y P++QK R+ PD +
Sbjct: 739 ELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDV 798
Query: 122 KSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDV 181
EV+K +DAG ++ V YP+W+ N V V KK+GK R+C+DF DL KA PKD+FPLPHID
Sbjct: 799 NEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDR 858
Query: 182 LVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*R 241
LV+ TA +++ SFMD FSGYNQI M DREKT FIT GT+CYKVMPFGL NAGATY R
Sbjct: 859 LVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPR 918
Query: 242 GMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRS 301
+ +F D + +EVY+DDM+VKS E+H+ +L + F+ L +Y ++LNP+KCTFGV S
Sbjct: 919 LVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTS 978
Query: 302 GKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIF 361
G+ LG++V+++GIE +P ++ AI ++P+P+ ++V+ +GR+ ++RFIS T C P +
Sbjct: 979 GEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFY 1038
Query: 362 KLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQD 421
+LLR N+ W+++C+ EG L +Y++V +V VL ++D
Sbjct: 1039 QLLRANKRFEWDEKCE--------------------EGETLYLYIAVSTSAVSGVLVRED 1078
Query: 422 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKY 481
++H I+Y+SK E RY LEK A+V +A++LR Y ++T +++ ++
Sbjct: 1079 R--GEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRT 1135
Query: 482 IFEKPAVTRKIARWQMLLSEYDIVFKAQKAIK 513
I P+ + ++A+W + LSEYDI +K + K
Sbjct: 1136 ILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
Score = 316 bits (810), Expect = 4e-86
Identities = 207/609 (33%), Positives = 306/609 (49%), Gaps = 74/609 (12%)
Query: 599 FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYAR 658
F +NN AEYEA I G+ A + +K + Y DS LV +Q G +E + ++ Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 659 RLLTYFTKVELHHIPRDENQMADALGTISSMFRVN-------HWNDVPIIKVQ-RLERPS 710
L F EL IPR +N ADAL ++S + DVP IK+Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 711 HVFTIEDMI---------------NRAD-----GNVV----------------------D 728
+T+ D+ +R++ GN+V
Sbjct: 1310 E-YTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADS 1368
Query: 729 DRP----WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLL 781
D P W + + ++ R P KDK RRL R + L + L + + VLL
Sbjct: 1369 DSPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLL 1423
Query: 782 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIY 841
C+D+ EA+Q+M ++H+G G H+ G ++ K+ + G YW TM DC + +C KCQ +
Sbjct: 1424 SCLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGH 1483
Query: 842 ADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYAN 901
A IH+P L P+PF W +D+I AS ++ILV DY+TKW EA SYA
Sbjct: 1484 APFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYAR 1541
Query: 902 VTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNG 961
+ + V F+ NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG
Sbjct: 1542 IQSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNG 1601
Query: 962 AVEAANKNIQKIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPL 1020
EA NK I ++K + K W + L L YRTT R ST TPFSL YGMEA+ P
Sbjct: 1602 QAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPC 1661
Query: 1021 EVEIPSLR---VIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1077
E +P++R +I + L++ Q D L+ +EE+R A+ R Q+YQ ++KKV
Sbjct: 1662 EAGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKV 1717
Query: 1078 RPREFKGGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPV 1136
+ R F G+LVL++ + GK ++EGPY++ K G L MDG +P
Sbjct: 1718 KNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSW 1777
Query: 1137 NADIVKKYF 1145
N+ +K+Y+
Sbjct: 1778 NSANLKRYY 1786
>At2g13330 F14O4.9
Length = 889
Score = 360 bits (925), Expect = 2e-99
Identities = 198/538 (36%), Positives = 297/538 (54%), Gaps = 59/538 (10%)
Query: 151 KKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 210
+K+GK R+C+DFRDL KA PKD+FPLPHID LV+ T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 211 REKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEE 270
+EKT+FIT GT+ YKVMPFGL NAG TY R + +F D + K +EVY+DDM+VKS E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 271 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 330
HV L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 331 QTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEP 390
+ ++V+ GR+ ++ FIS C P ++ LRK + WN +C+ AF +K YL EP
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 391 PILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 450
PIL P +G PL +Y T+ + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 451 CCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQK 510
+V + ++LR Y +H ++ I+ I + ++A+W + L EYDI ++ +
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 511 AIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDG 570
++K +LAD + PL D +G + + KW L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 571 DVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYG 630
N G G+G + SP G I + ++ F +NN +EYEA I GI+ A + I+ ++ Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 631 DSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISS 688
DS LV +Q GE+E ++ Y + + L F +L IPR EN AD L ++S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 318 bits (815), Expect = 1e-86
Identities = 158/355 (44%), Positives = 238/355 (66%), Gaps = 2/355 (0%)
Query: 111 RRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASP 170
R+ + A + EV K + G + V+YP+W+AN V V KK+GK R+C+DF DL KA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 171 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPF 230
KD+FPLPHID LV++TA +++ SFMD FSGYNQI M+PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 231 GLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRL 290
GL NAGATY R + +F + + K +EVY+DDM++KS +E HV++L + F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 291 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 350
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ K+V+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 351 SHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFD 410
S T P +++L+ N+ +W+++C+ AF +K YL PP+L P L +Y+SV +
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 411 ESVGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLEKTCCALVWAAKRLRHY 464
+V VL ++D G+++ Y + +F D E + + +E + AK R +
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Score = 218 bits (554), Expect = 2e-56
Identities = 156/534 (29%), Positives = 252/534 (46%), Gaps = 72/534 (13%)
Query: 634 LVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMF--R 691
+++NQ G++E +++ Y + L F K EL IPR +N ADAL ++S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 692 VNHWNDVPIIKVQRL--ERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGA 749
VN V I + + E+ + V T R G+ + P K + P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPKPAVQ 909
Query: 750 SNKDKKTLRRLAGRFLLDGDI----------------------LYKRNYDMVLLRCVDEH 787
N + + + ++ + LY+R L +
Sbjct: 910 ENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIFGP 969
Query: 788 EAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHV 847
E +M +VH+G G+H++G M+ K+ + YYW TM DC ++A++C +CQ++A IH
Sbjct: 970 VVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQ 1029
Query: 848 PPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVV 907
P + IS+P+PF W +D+IG + +++ G +++LV DY++KW+EA +
Sbjct: 1030 PSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA--------- 1079
Query: 908 AKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAAN 967
I+ +G+ K+ + S+ PQ NG EAAN
Sbjct: 1080 -------ILLNWGI------------------------KVSY--STLRYPQGNGQAEAAN 1106
Query: 968 KNIQKIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPS 1026
K I ++K + K W++ L L YRTT R STG TPFSLVYGM+AV+P E+ +P
Sbjct: 1107 KTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPG 1166
Query: 1027 LRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGE 1086
LR EA L+E E D L+ + E+R A+ + Q+YQ ++ KV+ R F G+
Sbjct: 1167 LR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGD 1225
Query: 1087 LVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 1139
VLKR +++ + GK N+EGPY+V + G L ++ + P N +
Sbjct: 1226 YVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 288 bits (737), Expect = 1e-77
Identities = 137/282 (48%), Positives = 196/282 (68%)
Query: 84 DMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 143
DM G+DP++ H + P + V+QK R+ P+ + + EV K +DAG ++ V+YPEW+
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 144 ANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 203
AN V V KK+ K R+C+DF DL KA PKD+FPLPHID +V+ T +++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 204 IKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMI 263
I M +D+EKTSFI GT+CYKVMPFGL N GA Y R + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 264 VKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 323
VKS H+++L FE L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 324 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 365
I ++ +P+ +K+V+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
>At1g37200 hypothetical protein
Length = 1564
Score = 280 bits (715), Expect = 4e-75
Identities = 133/298 (44%), Positives = 197/298 (65%), Gaps = 4/298 (1%)
Query: 34 PHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIV 93
P + I + + + K+ + VG L+ ++ L+E D FAWS ++ G+ ++
Sbjct: 614 PQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVT 673
Query: 94 EHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD 153
H + P Y P++QK R+ P+ A ++ EV + + G + V+YP+W+AN V V K+
Sbjct: 674 SHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKN 733
Query: 154 GKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 213
GK R+C+DF DL KA PKD+FPLPHID LV TA ++ SFMD FSGYNQI M P+D+EK
Sbjct: 734 GKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEK 793
Query: 214 TSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHV 273
T+FIT CYKVMPFGL N GATY R + +F D + K +E+Y+DDM+VKS E+ H+
Sbjct: 794 TAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHL 849
Query: 274 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQ 331
L + F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P ++ A +MP+P+
Sbjct: 850 PQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFIDMPSPK 907
Score = 238 bits (606), Expect = 2e-62
Identities = 166/555 (29%), Positives = 256/555 (45%), Gaps = 91/555 (16%)
Query: 421 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIK 480
D G+K IYY+SK D ET Y +EK A+V +A++LR YL +H ++ I+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 481 YIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDED 540
I + ++A+W + LSEYDI ++ + + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 541 IMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFE 600
+G + + KW L DG N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 601 CTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRL 660
+NN +EYEA I GI+ A MRI+ ++ + DS LV +Q GE+E ++ Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 661 LTYFTKVELHHIPRDENQMADALGTISSMFR--VNHWNDVPIIKVQRLERPSHVFTI--- 715
F EL IPR EN DAL ++S V II V+ +E PS T+
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHA 1192
Query: 716 ----------------------------------EDMINRADGNVVDDRPWYYDTKQFLL 741
E+ R + P Y+ + +
Sbjct: 1193 GMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPI 1252
Query: 742 SREYPPGASNKDKKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 798
G + DK R+L + R+ + L KR+ + C + + LM +H+
Sbjct: 1253 IDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHE 1312
Query: 799 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSP 858
G G+H +G T+ +L DC H+ +C KCQ +A +H PP ++ ISSP
Sbjct: 1313 GQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSP 1362
Query: 859 WPFSMWGIDMIGRIEPKASNGH---RFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNI 915
+PF W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+ NI
Sbjct: 1363 YPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENI 1420
Query: 916 ICRYGVPSKIITDNG 930
+ R+G+P +I+TDNG
Sbjct: 1421 VYRHGIPYEIVTDNG 1435
Score = 48.9 bits (115), Expect = 2e-05
Identities = 32/98 (32%), Positives = 52/98 (52%), Gaps = 2/98 (2%)
Query: 1049 NLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPD-PRGKWTPNY 1107
+ ++E+R AM + Q+YQ ++ ++ R F+ GELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 1108 EGPYVVKKAFSGGALILTHM-DGVELPNPVNADIVKKY 1144
EGPY + + G L + +GV P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At4g03800
Length = 637
Score = 268 bits (684), Expect = 2e-71
Identities = 136/337 (40%), Positives = 212/337 (62%), Gaps = 21/337 (6%)
Query: 85 MPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 144
MP +DP I+ H + P + P++QK R+ + A + ++ K + G + V+YP+WVA
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 145 NIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 204
V V KK+GK R+C+DF DL KA PKD+FPLPHID LV++TA +++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 205 KMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIV 264
M+PED+EKTSFIT + GATY + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 265 KSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 324
KS +E HV++L + FE L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 325 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIK 384
+ P+ + K+V+ GR+ S T P +++L+ N +W+++C+ AF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 385 NYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQD 421
YL PP+L P L +Y+ V + +V VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 264 bits (675), Expect = 2e-70
Identities = 176/558 (31%), Positives = 273/558 (48%), Gaps = 68/558 (12%)
Query: 637 NQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWN 696
N+ GE+E A + Y + R + F + EL IPR EN A+AL ++S F V
Sbjct: 790 NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849
Query: 697 DVPIIKVQ----RLERPSHVFT------------------------IEDMINRAD----- 723
+P+ + RL+ S V T I D ++ +
Sbjct: 850 VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909
Query: 724 ------GNVVDDRP-------WYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDI 770
+ D+P W + ++L+ P A + L+ RF + DI
Sbjct: 910 SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967
Query: 771 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 830
LY+R + C+ + +M +VHDGT G H G +++ K+ + GYYW T+ DC
Sbjct: 968 LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027
Query: 831 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYY 890
+ARKC +CQ +A I P L +S+P+PF W +D++G +
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072
Query: 891 TKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 950
T+ VEAA+Y+N+T V FI +IICR+G+P +I+TDNG+ + + CEE++I
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132
Query: 951 ISSPYRPQMNGAVEAANKNIQKIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFS 1009
S+P PQ NG EA NK I ++K + YK W L L RTT R +T TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192
Query: 1010 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARM 1069
L+YGMEAV+P E+++PS R I + +E E + D ++ ++E+R A+AR Q+Y
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251
Query: 1070 KTAFDKKVRPREFKGGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHM 1127
++ VR R F+ G LVL RR+ Q + GK ++EGPY + G L +M
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINM 1310
Query: 1128 DGVELPNPVNADIVKKYF 1145
+G + N+ +K+++
Sbjct: 1311 EGKTVRRAWNSMHLKRFY 1328
Score = 171 bits (433), Expect = 2e-42
Identities = 83/151 (54%), Positives = 107/151 (69%)
Query: 85 MPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 144
M G+ +++ H + P + PV+QK R+ PD A + EV + ++ G + V+YPEW+A
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 145 NIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 204
N V V KK+GK R+CVDF DL KA KD FPLPHID LV++T ++ SFMD FSGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 205 KMSPEDREKTSFITP*GTFCYKVMPFGLINA 235
M+PED+EKTSFIT GT+ YKVMPFGL NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 82.8 bits (203), Expect = 1e-15
Identities = 43/146 (29%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 371 VWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHAI 430
+WN+ C+ AF +K YL EP +L G L +Y++V + +V V + + + K+ I
Sbjct: 630 IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687
Query: 431 YYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTR 490
+Y+ +TRY M+EK A+V AA++LR Y +H +++ + ++ I P +
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739
Query: 491 KIARWQMLLSEYDIVFKAQKAIKGSI 516
++ +W + LSE+D+ F+A+ ++ ++
Sbjct: 740 RLGKWAIELSEFDLEFRARTSLNSTM 765
>At2g10780 pseudogene
Length = 1611
Score = 264 bits (674), Expect = 2e-70
Identities = 157/461 (34%), Positives = 248/461 (53%), Gaps = 18/461 (3%)
Query: 54 KVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPEYPPVRQKLRR 112
+VGA+ E K ++ E+ D+FA + G+ P + I +P P+ + R
Sbjct: 615 EVGASAE----LKDIPIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 666
Query: 113 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKD 172
P K+K ++++ +D GF+ P W A ++ V KKDG R+C+D+R L K + K+
Sbjct: 667 MAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725
Query: 173 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
+PLP ID L+D ++ FS +D SGY+QI + P D KT+F T F + VMPFGL
Sbjct: 726 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785
Query: 233 INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
NA A + + M +F D + + V ++++D++V SK E H E+L + ERLR+++L
Sbjct: 786 TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKL 845
Query: 293 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
+KC+F RS LG ++S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+
Sbjct: 846 SKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 905
Query: 353 MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
+ P+ +L K+ W+DEC+ +F +K L P+LV P EG P +Y
Sbjct: 906 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965
Query: 413 VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWL 472
+GCVL Q K I Y S++ E Y + A+V+ K R YL +
Sbjct: 966 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQI 1019
Query: 473 ISRMDQIKYIFEKPAVTRKIARWQMLLSEY--DIVFKAQKA 511
+ +KYIF +P + + RW L+++Y DI + KA
Sbjct: 1020 YTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060
Score = 94.7 bits (234), Expect = 3e-19
Identities = 81/365 (22%), Positives = 157/365 (42%), Gaps = 28/365 (7%)
Query: 783 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQI 840
CV A E+++ + H F H + M R L R Y+W+ M+ D + KC CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210
Query: 841 YADKIHVPPHALNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASY 899
+ VP L + P W + +D + + + H + V +D TK +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 900 ANVT-KQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQ 958
++ +++A+ + I+ +G+P I++D T + +A + ++S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 959 MNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1017
+ E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 1018 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1077
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 1438
Query: 1078 RPREFKGGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 1133
+ EF+ G+LV + ++ + R K +P Y GPY V + A L +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492
Query: 1134 NPVNA 1138
+NA
Sbjct: 1493 PKLNA 1497
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 260 bits (665), Expect = 3e-69
Identities = 150/455 (32%), Positives = 246/455 (53%), Gaps = 13/455 (2%)
Query: 69 QLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQK 127
++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 458 RVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKD 513
Query: 128 QIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTA 187
+ GF+ P W A ++ V KKDG R+C+D+R+L + + K+ +PLP ID L+D
Sbjct: 514 LLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLR 572
Query: 188 QSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLF 247
+ FS +D SGY+QI ++ D KT+F T G F + VMPFGL NA A + R M ++F
Sbjct: 573 GATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVF 632
Query: 248 HDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGF 307
+ + + V +++DD++V SK E+ +L ++ E+LR+ KL +KC+F R LG
Sbjct: 633 QEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGH 692
Query: 308 IVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKN 367
IVS +G+ VDP+K+ AIR+ P P ++R FLG Y RF+ + P+ KL K+
Sbjct: 693 IVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKD 752
Query: 368 QPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKE 427
P VW+ EC+ F S+K L P+L P G+P ++Y +GCVL Q +
Sbjct: 753 VPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK----- 807
Query: 428 HAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPA 487
I Y S++ E Y + A+++A K R YL + + +KYIF +P
Sbjct: 808 -VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPE 866
Query: 488 VTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLA 522
+ + RW L+++YD+ A K +++ D L+
Sbjct: 867 LNLRQRRWMELVADYDLEI-AYHPGKANVVVDALS 900
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 256 bits (654), Expect = 5e-68
Identities = 149/455 (32%), Positives = 244/455 (52%), Gaps = 13/455 (2%)
Query: 69 QLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQK 127
++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 484 RVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLED 539
Query: 128 QIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTA 187
+ GF+ P W A ++ V KKDG R+C+D+R L + K+ +PLP ID L+D
Sbjct: 540 LLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLR 598
Query: 188 QSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLF 247
+ FS +D SGY+QI ++ D KT+F T G F + VMPF L NA A + R M ++F
Sbjct: 599 GATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVF 658
Query: 248 HDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGF 307
+ + + V +++DD++V SK E+H +L ++ E+LR+ KL +KC+F R LG
Sbjct: 659 QEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGH 718
Query: 308 IVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKN 367
IVS +G+ VDP+K+ AIR+ P P ++R FL Y RF+ + P+ KL K+
Sbjct: 719 IVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKD 778
Query: 368 QPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKE 427
P VW+ EC+ F S+K L P+L P G+P ++Y +GCVL Q+ +
Sbjct: 779 VPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK----- 833
Query: 428 HAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPA 487
I Y S++ E Y + +++A K R YL + + +KYIF +P
Sbjct: 834 -VIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPE 892
Query: 488 VTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLA 522
+ + RW L+++YD+ A K +++AD L+
Sbjct: 893 LNLRQMRWMELVADYDLEI-AYHPGKANVVADALS 926
Score = 75.9 bits (185), Expect = 1e-13
Identities = 74/332 (22%), Positives = 135/332 (40%), Gaps = 49/332 (14%)
Query: 785 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADK 844
DE +++ + H F H M R L R Y W+ M+ D +C CQ+ +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 845 IHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTK 904
VP D I I + + F+ + + + A+
Sbjct: 1071 HQVP------------------DAIWVIMDRLTKSAHFLAI------RKTDGAA------ 1100
Query: 905 QVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVE 964
V+AK + I+ +GVP I++D + +A + + +S+ Y PQ +G E
Sbjct: 1101 -VLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSE 1159
Query: 965 AANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
+ ++ +++ V + W + L Y + ++S G PF +YG PL
Sbjct: 1160 RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLR-- 1217
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
+ E + A++ Q +++ +++ +A AR +SY DK+ R EF+
Sbjct: 1218 ---WTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA-------DKRRRELEFE 1267
Query: 1084 GGELV-LKRRISQQPDP---RGKWTPNYEGPY 1111
G+ V LK + + P+ K +P Y GP+
Sbjct: 1268 VGDRVYLKMAMLRGPNRSILETKLSPRYMGPF 1299
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 255 bits (652), Expect = 9e-68
Identities = 155/493 (31%), Positives = 245/493 (49%), Gaps = 49/493 (9%)
Query: 71 LREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQID 130
L +Y +S +D+ G+ P + HRI + E + RR +P++ +K E+ K +D
Sbjct: 865 LMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLD 924
Query: 131 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLIKASPKD 172
AG + + WV+ + VPKK G RMC+++R L AS K+
Sbjct: 925 AGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKE 984
Query: 173 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
+FPLP ID +++ A + F+D +SG+ QI + P D+ KT+F P GTF YK MPFGL
Sbjct: 985 HFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGL 1044
Query: 233 INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
NA AT+ R MT++F D+I + VEV++DD V + L ++ +R + L LN
Sbjct: 1045 CNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNW 1104
Query: 293 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
KC F VR G +LG +S++GIEVD K+ + ++ P+T K +R FLG + FI
Sbjct: 1105 EKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKD 1164
Query: 353 MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
+ P+ +LL K ++DEC AF IK L+ PI+ P P +
Sbjct: 1165 FSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII------- 1217
Query: 413 VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWL 472
D + RY EK A+V+A ++ R YLV +
Sbjct: 1218 -----------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTI 1254
Query: 473 ISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPI 532
+ +++I+ K ++ RW +LL E+D+ +K I+ + ADHL+ ++D I
Sbjct: 1255 YTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLI 1313
Query: 533 KFDFPDEDIMYLK 545
P+E +M ++
Sbjct: 1314 DDSMPEEQLMAIQ 1326
Score = 194 bits (492), Expect = 3e-49
Identities = 136/418 (32%), Positives = 203/418 (48%), Gaps = 41/418 (9%)
Query: 731 PWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 790
PWY D +L+S E PP S+ +KK + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 791 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPP 849
++ H +G H AT TMS K+L+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 850 HALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAK 909
F +WGID +G +S G+++ILVAIDY +KWVEA + +VV K
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTNDARVVLK 1490
Query: 910 FIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKN 969
+ I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1491 LFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNRE 1542
Query: 970 IQKIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 1028
I+ I++K V +T KDW L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1543 IKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMW 1602
Query: 1029 VIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELV 1088
+ + R QLN + + R++A + Y+ R K+ DKK+ R+FK G+ V
Sbjct: 1603 AVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQV 1662
Query: 1089 L--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 1144
L R+ P GK + GP+ V GA+ L +G VN +KKY
Sbjct: 1663 LLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 248 bits (634), Expect = 1e-65
Identities = 154/501 (30%), Positives = 253/501 (49%), Gaps = 25/501 (4%)
Query: 25 LEQERKAIEPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYED 84
L+ R + + E L+ G + + A E + K + E+ D+F +
Sbjct: 401 LDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QS 456
Query: 85 MPGLDPKIVE-HRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 143
+ GL P + I +P P+ + R P ++K +++ + A L
Sbjct: 457 LQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------- 508
Query: 144 ANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 203
V KKDG R+C+D+R L + K+ +PLP ID L+D + FS +D SGY+
Sbjct: 509 -----VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563
Query: 204 IKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMI 263
I ++ D KT+F T G F + VMPFGL NA A + R M ++F +++ + V +++DD++
Sbjct: 564 IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623
Query: 264 VKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 323
V SK E+H +L ++ E+LR+ KL +KC+F R LG IVS +G+ VDP+K+ A
Sbjct: 624 VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683
Query: 324 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSI 383
IR+ P ++R FLG Y RF+ + P+ KL K+ P VW+ EC+ F S+
Sbjct: 684 IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743
Query: 384 KNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETR 443
K L P+L P G P ++Y +GCVL Q+ + I Y S++ E
Sbjct: 744 KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGN 797
Query: 444 YTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYD 503
Y + A+++A K R YL + + +KYIF +P + + +W L+++YD
Sbjct: 798 YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857
Query: 504 IVFKAQKAIKGSILADHLAYQ 524
+ A K +++AD L+++
Sbjct: 858 LEI-AYHPGKANVVADALSHK 877
Score = 68.6 bits (166), Expect = 2e-11
Identities = 69/288 (23%), Positives = 123/288 (41%), Gaps = 27/288 (9%)
Query: 834 KCHKCQIYADKIHVPPHALNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTK 892
+C CQ+ + VP L + P W + ID + + S I V +D TK
Sbjct: 949 ECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWVIVDRLTK 1006
Query: 893 WVEAASYANVTKQ----VVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIE 948
+A + + K V+AK + I+ +GVP I++D + + +A E +
Sbjct: 1007 ---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTK 1063
Query: 949 HHISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATP 1007
+S+ Y PQ G E + ++ +++ V + W + L Y + +S G P
Sbjct: 1064 VQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAP 1123
Query: 1008 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQA 1067
F +Y PL L + E + A++ Q +++ +++ +A R +SY
Sbjct: 1124 FEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYA- 1177
Query: 1068 RMKTAFDKKVRPREFKGGELV-LKRRISQQPD---PRGKWTPNYEGPY 1111
DK+ R EF+ G+ V LK + + P+ K +P Y GP+
Sbjct: 1178 ------DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPF 1219
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 244 bits (623), Expect = 2e-64
Identities = 144/414 (34%), Positives = 227/414 (54%), Gaps = 16/414 (3%)
Query: 54 KVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVE-HRIPTKPEYPPVRQKLRR 112
+VGA+ E K ++ E+ D+FA + G+ P + I +P P+ + R
Sbjct: 110 EVGASAE----LKDILIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 161
Query: 113 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKD 172
P ++K ++++ + GF+ P W A ++ V KKDG R+C+D+R L K + K+
Sbjct: 162 MAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 220
Query: 173 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
+PLP ID L+D ++ FS +D SGY+QI + P D KT+F T G F + VMPFGL
Sbjct: 221 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGL 280
Query: 233 INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
NA A + + M +F D + + V +++DD++V SK E H E+L + ERLR+++L
Sbjct: 281 TNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKL 340
Query: 293 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
+K +F RS LG ++S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+
Sbjct: 341 SKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 400
Query: 353 MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
+ P+ +L K+ W+DEC+ +F +K L+ P+LV P EG P +Y
Sbjct: 401 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVG 460
Query: 413 VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLV 466
+GCVL Q K I Y S++ E Y + A+V+A K R YL+
Sbjct: 461 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 99.0 bits (245), Expect = 1e-20
Identities = 78/340 (22%), Positives = 149/340 (42%), Gaps = 22/340 (6%)
Query: 783 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQI 840
CV A E+++ + H F H + M R L R Y+W+ M D + KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 841 YADKIHVPPHAL-NVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASY 899
+ VP L N+ S W + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 900 ANVT-KQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQ 958
++ +++A+ + I+ +G+P I++D T + A + ++S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 959 MNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1017
+G E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 1018 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1077
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 830
Query: 1078 RPREFKGGELVLKRRISQQP----DPRGKWTPNYEGPYVV 1113
+ EF+ G+LV + ++ + R K +P Y GPY V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At3g11970 hypothetical protein
Length = 1499
Score = 243 bits (620), Expect = 5e-64
Identities = 158/510 (30%), Positives = 259/510 (49%), Gaps = 17/510 (3%)
Query: 60 EEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMAL 119
E G + + ++L EYPDIF P + H+I PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKH--NHKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 120 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHI 179
+I V+ + G + P + + +V V KKDG R+CVD+R+L + KD+FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 180 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY 239
+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 240 *RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 299
M +F + K V V+ DD++V S E+H ++L ++FE +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 300 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGP 359
+ LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 360 IFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQ 419
+ L K W Q AF+ +K L + P+L P+ + ++ + +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 420 QDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQI 479
+ H + Y+S++ + ++ EK A+++A ++ RHYL+ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 480 KYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDE 539
KY+ E+ T +W L E+D + ++ K +++AD L+ + + +
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALSRVEGSEVLHMAMTVVEC 1026
Query: 540 DIM------YLKSKDCEEPLIGEGPDPDSK 563
D++ Y ++ + DPDSK
Sbjct: 1027 DLLKDIQAGYANDSQLQDIITALQRDPDSK 1056
Score = 79.7 bits (195), Expect = 9e-15
Identities = 85/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 796 VHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVI 855
+H G H+ G ++ + ++ +YW M D + R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 856 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYYTKWVEAASYAN-VTKQVVAKFIRN 913
P P ++W + IE S G I+V +D +K + ++ + VA +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204
Query: 914 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKI 973
N+ +G P+ I++D + + + ++S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 974 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 1032
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 1033 AKLS-EAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVL-- 1089
+K++ A Q R D L ++ M A Q RMK D+ REF+ G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 1090 ---KRRISQQPDPRGKWTPNYEGPYVV 1113
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g36590 hypothetical protein
Length = 1499
Score = 243 bits (620), Expect = 5e-64
Identities = 158/510 (30%), Positives = 259/510 (49%), Gaps = 17/510 (3%)
Query: 60 EEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMAL 119
E G + + ++L EYPDIF P + H+I PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKH--NHKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 120 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHI 179
+I V+ + G + P + + +V V KKDG R+CVD+R+L + KD+FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 180 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY 239
+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 240 *RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 299
M +F + K V V+ DD++V S E+H ++L ++FE +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 300 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGP 359
+ LG +S +GIE DP K++A++E P P T KQ+RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 360 IFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQ 419
+ L K W Q AF+ +K L + P+L P+ + ++ + +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 420 QDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQI 479
+ H + Y+S++ + ++ EK A+++A ++ RHYL+ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 480 KYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDE 539
KY+ E+ T +W L E+D + ++ K +++AD L+ + + +
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALSRVEGSEVLHMAMTVVEC 1026
Query: 540 DIM------YLKSKDCEEPLIGEGPDPDSK 563
D++ Y ++ + DPDSK
Sbjct: 1027 DLLKDIQAGYANDSQLQDIITALQRDPDSK 1056
Score = 75.1 bits (183), Expect = 2e-13
Identities = 84/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 796 VHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVI 855
+H G H+ G ++ + ++ +Y M D + R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 856 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYYTKWVEAASYAN-VTKQVVAKFIRN 913
P P ++W + IE S G I+V +D +K + ++ + VA+ +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204
Query: 914 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKI 973
N+ +G P+ I++D + + + ++S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 974 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 1032
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 1033 AKLS-EAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVL-- 1089
+K++ A Q R D L ++ M A Q RMK D+ REF+ G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 1090 ---KRRISQQPDPRGKWTPNYEGPYVV 1113
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g35370 hypothetical protein
Length = 1447
Score = 234 bits (598), Expect = 2e-61
Identities = 156/478 (32%), Positives = 250/478 (51%), Gaps = 20/478 (4%)
Query: 46 TEENKREIKVGAALEEGVKRKIFQ-LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYP 104
++E + + A + V+ + Q ++ E+PD+FA D+P K +H+I
Sbjct: 522 SDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPFREKH-DHKIKLLEGAN 579
Query: 105 PVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRD 164
PV Q+ R +I VQ I +G + P + + +V V KKDG R+CVD+ +
Sbjct: 580 PVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTE 638
Query: 165 LIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFC 224
L + KD F +P I+ L+D S VFS +D +GY+Q++M P+D +KT+F T G F
Sbjct: 639 LNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFE 698
Query: 225 YKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 284
Y VM FGL NA AT+ M ++F D + K V V+ DD+++ S E+H E+L +FE +R
Sbjct: 699 YLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMR 758
Query: 285 KYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLN 344
+KL F S + LG +S + IE DP K++A++E P P T KQVRGFLG
Sbjct: 759 LHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAG 810
Query: 345 YISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIM 404
Y RF+ + GP+ L K W+ E Q AFD++K L P+L PV + ++
Sbjct: 811 YYRRFVRNFGVIAGPL-HALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV 869
Query: 405 YLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHY 464
+ + VL Q K H + Y+S++ + ++ EK A ++A ++ RHY
Sbjct: 870 ETDACGQGIRAVLMQ------KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHY 923
Query: 465 LVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLA 522
L+ + + +KY+ E+ T +W L E+D + ++ K +++AD L+
Sbjct: 924 LLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQG-KENLVADALS 980
Score = 83.6 bits (205), Expect = 6e-16
Identities = 88/347 (25%), Positives = 148/347 (42%), Gaps = 26/347 (7%)
Query: 806 TGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWG 865
+G S + +++ +YW M D R C CQ P L + P P +W
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125
Query: 866 IDMIGRIEPKASNGHR-FILVAIDYYTKWVEAASYAN-VTKQVVAKFIRNNIICRYGVPS 923
+ IE ++G + I+V +D +K + A+ + VA+ +N+ +G P+
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185
Query: 924 KIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTYKD 983
I++D ++ + + +E +SS Y PQ +G E N+ ++ ++ M
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245
Query: 984 -WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 1042
W++ LP A + Y T SS+ TPF LVYG + L +V + A+ Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARS-----LQ 1300
Query: 1043 SRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVL-----KRRISQQP 1097
R + L ++ M A Q RMK D+ R F G+ V R+ S
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 1098 DPRGKWTPNYEGPY-VVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
K +P Y GPY +++K G ++ +LP+ V DI +K
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKC--GEVMVGNVTTSTQLPS-VLPDIFEK 1397
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 227 bits (578), Expect = 3e-59
Identities = 152/503 (30%), Positives = 241/503 (47%), Gaps = 79/503 (15%)
Query: 71 LREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQID 130
LR+Y +S +D+ G+ P + H I + E + RR + ++ +K E+ K +D
Sbjct: 340 LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399
Query: 131 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLIKASPKD 172
AG + + WV+ + VPKK G + RMC+D+R L A+ KD
Sbjct: 400 AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459
Query: 173 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
NFPL ID +++ + + F+DG+ G+ QI + P+D+EKT+F P GTF Y+ MPFGL
Sbjct: 460 NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519
Query: 233 INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
NA AT+ M +F DMI +EV++DD +V + E++H L LN
Sbjct: 520 CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564
Query: 293 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
K F VR G +LG +S+KG+EVD K+ +R FLG + RFI
Sbjct: 565 EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611
Query: 353 MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
+ P +LL K Q ++D C AF+ +K L+ I+ PP P + D
Sbjct: 612 FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671
Query: 413 VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWL 472
VG VLGQ+ + KK HAIYY S+ + ++ HT
Sbjct: 672 VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706
Query: 473 ISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPI 532
++Y+ K ++ RW +LL ++D+ K +K I+ + AD+L+ + + +
Sbjct: 707 -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLSRLRVQEEVLM 760
Query: 533 KFDFPDEDIMYLKSKDCEEPLIG 555
+ P E++ + +DC +G
Sbjct: 761 RDILPGENLASI--EDCYMDEVG 781
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 200 bits (509), Expect = 3e-51
Identities = 122/381 (32%), Positives = 198/381 (51%), Gaps = 18/381 (4%)
Query: 170 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYN-------QIKMSPEDREKTSFITP*GT 222
P D +P+ ++ D + +V ++ Y +++ + ++KT+F P GT
Sbjct: 119 PNDTYPV----IINDGLSDEQVNQLLNELRKYRGQLVVSFKLQFTLMIKKKTTFTCPNGT 174
Query: 223 FCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFER 282
F YK M FGL NA T+ R MT++F D I + +EV++DD S + L ++ ER
Sbjct: 175 FAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC----LLNLCRVLER 230
Query: 283 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 342
+ L LN KC F V G +LG +S KGIEVD K+ + ++ P+T K +R FLG
Sbjct: 231 CEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGH 290
Query: 343 LNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPL 402
+ RFI + P+ +LL K ++++C AF IK L+ PI P P
Sbjct: 291 AEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPIFQAPNWDHPF 350
Query: 403 IMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLR 462
+ FD +VG VL Q+ + K H IYY S+ + +TRY +EK A+V+A +++R
Sbjct: 351 EIMCDAFDYAVGAVLDQKID--DKLHVIYYASRTMDEAQTRYATIEKELLAVVFAFEKIR 408
Query: 463 HYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLA 522
YLV + +++I+ K ++ RW +LL E+D+ +K ++ + ADHL+
Sbjct: 409 SYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVENGV-ADHLS 467
Query: 523 YQPLDDYQPIKFDFPDEDIMY 543
++D PI P+E +M+
Sbjct: 468 RMRIEDSVPIDDTMPEEQLMF 488
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 960 NGAVEAANKNIQKIVQKMVTTYK-DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 1018
+G VE +N+ ++ I+ K+V K DW L L YRT ++ G TPF ++YG L
Sbjct: 525 SGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCHL 584
Query: 1019 PLEVEIPSL 1027
P+EVE ++
Sbjct: 585 PVEVEYKAI 593
Score = 30.8 bits (68), Expect = 4.6
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 564 WGLVFDGDVNAYGKGIGAVI---VSPQGHHIPFTARILFECTNNMAEYE----ACIFGIE 616
W F+ +A+ +GAV+ + + H I + +R + E A E A +F E
Sbjct: 346 WDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELLAVVFAFE 405
Query: 617 EAIDMRIKH-LNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 675
+ + + +Y D A + I + ET L R + + ++ I +
Sbjct: 406 KIRSYLVGFKVKVYIDHA-ALRHIYAKKETKSRLL--------RWILLLQEFDMEIIDKK 456
Query: 676 --ENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRPWY 733
EN +AD L + V + +P ++ + + F +DM AD + PWY
Sbjct: 457 GVENGVADHLSRMRIEDSVPIDDTMPEEQLMFYDLVNKSFDTKDMPEEADAVEEEKLPWY 516
Query: 734 YDTKQFLLSREYPPGASNKDKKTL 757
D +L S + SN+ K +
Sbjct: 517 ADLVNYLTSGQVE--VSNRQMKDI 538
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,255,350
Number of Sequences: 26719
Number of extensions: 1246389
Number of successful extensions: 3238
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2891
Number of HSP's gapped (non-prelim): 242
length of query: 1145
length of database: 11,318,596
effective HSP length: 110
effective length of query: 1035
effective length of database: 8,379,506
effective search space: 8672788710
effective search space used: 8672788710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC148652.2