BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148528.11 - phase: 0 
         (143 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g09990 40S ribosomal protein S16                                   258  6e-70
At5g18380 40S RIBOSOMAL PROTEIN S16                                   258  8e-70
At3g04230 putative 40S ribosomal protein S16                          247  1e-66
At3g49080 30S ribosomal protein S9 -like                               29  0.98
At5g48630 cyclin C-like protein                                        27  2.9
At4g37120 step II splicing factor like protein                         27  4.9
At1g65660 step II splicing factor, putative                            27  4.9
At5g18485 unknown protein                                              26  8.3

>At2g09990 40S ribosomal protein S16
          Length = 146

 Score =  258 bits (660), Expect = 6e-70
 Identities = 125/139 (89%), Positives = 133/139 (94%)

Query: 5   EQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVD 64
           E VQCFGRKK AVAVT+CKRG GLIK+NG PIEL +PEILRFK FEPILLLGKHRFAGV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 65  MRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 124
           MRIRVNGGGHT+Q+YAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 125 EPKKFGGRGARARFQKSYR 143
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146


>At5g18380 40S RIBOSOMAL PROTEIN S16
          Length = 146

 Score =  258 bits (659), Expect = 8e-70
 Identities = 124/139 (89%), Positives = 133/139 (95%)

Query: 5   EQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVD 64
           E VQCFGRKK AVAVT+CKRG GLIK+NG PIEL +PEILRFK FEP+LLLGKHRFAGV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 65  MRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 124
           MRIRVNGGGHT+Q+YAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 125 EPKKFGGRGARARFQKSYR 143
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146


>At3g04230 putative 40S ribosomal protein S16
          Length = 146

 Score =  247 bits (631), Expect = 1e-66
 Identities = 119/139 (85%), Positives = 129/139 (92%)

Query: 5   EQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVD 64
           E VQCFGRKK A AVTYCKRG G+IK+NG+PIEL +PEILRFK FEP+LLLGKHRFAGVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 65  MRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 124
           MRIR  GGG+T+++YAIRQSIAKALVAYYQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 125 EPKKFGGRGARARFQKSYR 143
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146


>At3g49080 30S ribosomal protein S9 -like
          Length = 143

 Score = 28.9 bits (63), Expect = 0.98
 Identities = 33/129 (25%), Positives = 51/129 (38%), Gaps = 12/129 (9%)

Query: 11  GRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVDMRIRVN 70
           GR+K ++A  + + G G  ++N    ++  P +L  +A     L         D++  V 
Sbjct: 23  GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 81

Query: 71  GGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 130
           GGG T +         + LV    K+ D ++       L R        D R  E KK G
Sbjct: 82  GGGTTGKTSPQSLRFLRRLV---PKFSDMRTSLRAAGFLTR--------DSRVVERKKPG 130

Query: 131 GRGARARFQ 139
              AR  FQ
Sbjct: 131 KAKARKSFQ 139


>At5g48630 cyclin C-like protein
          Length = 253

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 86  AKALVAYYQK-YVDEQSKKEIKDIL 109
           AK LV Y +K Y DE+ + EIKDIL
Sbjct: 104 AKLLVFYMKKLYADEKFRYEIKDIL 128


>At4g37120 step II splicing factor like protein
          Length = 536

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 60  FAGVDMRIRVNGGGHTAQI--YAIRQSIAKALV 90
           FA V+ R+R  GGG T  +    IR+  AK L+
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLL 249


>At1g65660 step II splicing factor, putative
          Length = 535

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 60  FAGVDMRIRVNGGGHTAQI--YAIRQSIAKALV 90
           FA V+ R+R  GGG T  +    IR+  AK L+
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLL 249


>At5g18485 unknown protein
          Length = 537

 Score = 25.8 bits (55), Expect = 8.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 87  KALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGG 131
           K +VA     V + SKK +K    + ++  L+A+P +  P +F G
Sbjct: 60  KDMVALVSDGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWG 104


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.142    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,030,507
Number of Sequences: 26719
Number of extensions: 113013
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 8
length of query: 143
length of database: 11,318,596
effective HSP length: 89
effective length of query: 54
effective length of database: 8,940,605
effective search space: 482792670
effective search space used: 482792670
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)