BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.5 + phase: 0
(102 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52960 hypothetical protein 128 4e-31
At3g13250 hypothetical protein 125 3e-30
At3g42100 putative protein 125 4e-30
At3g43350 putative protein 124 8e-30
At3g30560 hypothetical protein 123 1e-29
At1g35940 hypothetical protein 122 4e-29
At3g31980 hypothetical protein 120 1e-28
At2g14470 pseudogene 118 4e-28
At5g34960 putative protein 115 3e-27
At1g54430 hypothetical protein 111 5e-26
At5g28670 putative protein 111 7e-26
At5g28780 putative protein 110 9e-26
At3g31440 hypothetical protein 110 9e-26
At5g37110 putative helicase 109 2e-25
At3g30420 hypothetical protein 109 3e-25
At2g07620 putative helicase 109 3e-25
At5g32630 putative protein 108 4e-25
At2g14300 pseudogene; similar to MURA transposase of maize Muta... 107 1e-24
At4g03690 hypothetical protein 101 7e-23
At2g05080 putative helicase 84 2e-17
>At1g52960 hypothetical protein
Length = 924
Score = 128 bits (322), Expect = 4e-31
Identities = 64/102 (62%), Positives = 74/102 (71%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL + + VI AR I G G++V IPRM + PS +
Sbjct: 809 MLLRNMDPNKGLCNGTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKM 868
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++FAMTINKSQGQTL SVGLYLPRPVF+HGQLYV
Sbjct: 869 RRRQFPLSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYV 910
>At3g13250 hypothetical protein
Length = 1419
Score = 125 bits (315), Expect = 3e-30
Identities = 60/102 (58%), Positives = 75/102 (72%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL I L +++ A+VI G G++VYIP +N+ PS +
Sbjct: 1280 MLLRNLDPKGGLCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKM 1339
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++F MTINKSQGQ+L VGLYLP+PVF+HGQLYV
Sbjct: 1340 RRRQFPLSVAFVMTINKSQGQSLEQVGLYLPKPVFSHGQLYV 1381
>At3g42100 putative protein
Length = 1752
Score = 125 bits (314), Expect = 4e-30
Identities = 62/102 (60%), Positives = 74/102 (71%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL I L K V+ A+VI G++V IP +NL PS +
Sbjct: 1612 MLLRNLDPKGGLCNGTRLQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKM 1671
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++FAMTINKSQGQ+L VGLYLP+PVF+HGQLYV
Sbjct: 1672 RRRQFPLSVAFAMTINKSQGQSLEQVGLYLPKPVFSHGQLYV 1713
>At3g43350 putative protein
Length = 830
Score = 124 bits (311), Expect = 8e-30
Identities = 62/102 (60%), Positives = 73/102 (70%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL + + VI AR I G G++V IPRM + PS +
Sbjct: 599 MLLRNMDPNKGLCNGTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKM 658
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R+QF L ++FAMTINKSQGQTL SVGLYLPRPVF+HGQLYV
Sbjct: 659 RRKQFALSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYV 700
Score = 122 bits (305), Expect = 4e-29
Identities = 61/102 (59%), Positives = 72/102 (69%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL + + VI AR I G G++V IPRM + P +
Sbjct: 715 MLLRNMDPNKGLCNGTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPLDTRLPFKM 774
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R+QF L ++FAMTINKSQGQTL SVGLYLPRPVF+HGQLYV
Sbjct: 775 RRKQFALSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYV 816
Score = 80.9 bits (198), Expect = 1e-16
Identities = 48/102 (47%), Positives = 54/102 (52%), Gaps = 35/102 (34%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL + + +I AR I
Sbjct: 518 MLLRNMDPNKGLCNGTRLQVTQMTDTIIQARFI--------------------------- 550
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
+FAMTINKSQGQTL SVGLYLPRPVF+HGQLYV
Sbjct: 551 --------TAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYV 584
>At3g30560 hypothetical protein
Length = 1473
Score = 123 bits (309), Expect = 1e-29
Identities = 60/102 (58%), Positives = 76/102 (73%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GL NGTRL IV LG ++ R++ G G++V IPRM L PS +
Sbjct: 1334 MLLRNLDSHGGLMNGTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKM 1393
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
+RRQFPL ++FAMTINKSQGQ+L +VG+YLP+PVF+HGQLYV
Sbjct: 1394 KRRQFPLSVAFAMTINKSQGQSLGNVGIYLPKPVFSHGQLYV 1435
>At1g35940 hypothetical protein
Length = 1678
Score = 122 bits (305), Expect = 4e-29
Identities = 59/102 (57%), Positives = 73/102 (70%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL I L ++ A+VI G G +V IP +NL P+ +
Sbjct: 1538 MLLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKM 1597
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++FAMTINKSQGQ+L +GLYLP+PVF+HGQLYV
Sbjct: 1598 RRRQFPLSVAFAMTINKSQGQSLEHIGLYLPKPVFSHGQLYV 1639
>At3g31980 hypothetical protein
Length = 1099
Score = 120 bits (300), Expect = 1e-28
Identities = 56/102 (54%), Positives = 73/102 (70%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL + +G +++ ARVI G G+ V I + + PS +
Sbjct: 958 MLLRNIDPKGGLCNGTRLQVTQMGNHILEARVITGDRVGDKVIIIKSQISPSDTKLPFRM 1017
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFP+ ++FAMTINKSQGQ+L VG+YLP+PVF+HGQLYV
Sbjct: 1018 RRRQFPIAVAFAMTINKSQGQSLKEVGIYLPKPVFSHGQLYV 1059
>At2g14470 pseudogene
Length = 1265
Score = 118 bits (296), Expect = 4e-28
Identities = 56/102 (54%), Positives = 72/102 (69%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
+LLRN+D GLCNGTRL I L ++ A+VI G G ++ IP +NL P+ +
Sbjct: 1142 LLLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGHIILIPTVNLTPTNTKLPFKM 1201
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++F MTINKS+GQ+L VGLYLP+PVF+HGQLYV
Sbjct: 1202 RRRQFPLSVAFVMTINKSEGQSLEHVGLYLPKPVFSHGQLYV 1243
>At5g34960 putative protein
Length = 1033
Score = 115 bits (289), Expect = 3e-27
Identities = 58/102 (56%), Positives = 71/102 (68%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GLCNGTRL I L ++ A+VI G G +V IP +NL P+ +
Sbjct: 893 MLLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTPTDTKLPFKM 952
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFPL ++FAMTIN SQGQ+L VGLYLP+ VF+HGQLYV
Sbjct: 953 RRRQFPLSVAFAMTINTSQGQSLEHVGLYLPKAVFSHGQLYV 994
>At1g54430 hypothetical protein
Length = 1639
Score = 111 bits (278), Expect = 5e-26
Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGA-HAGEVVYIPRMNLIPSGANVSIT 59
MLLRN++Q GLCNGTRLI+ LG V+ A ++ + V IPR+ L P + T
Sbjct: 1492 MLLRNLNQKEGLCNGTRLIVTHLGDKVLKAEILSDTTKERKKVLIPRIILSPQDSKHPFT 1551
Query: 60 FERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFP+ + +AMTINKSQGQTL V LYLP+PVF+HGQLYV
Sbjct: 1552 LRRRQFPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYV 1594
>At5g28670 putative protein
Length = 647
Score = 111 bits (277), Expect = 7e-26
Identities = 55/99 (55%), Positives = 72/99 (72%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GL NGTRL IV LG ++ R++ G G++V IPRM L PS + + T
Sbjct: 549 MLLRNLDPYGGLMNGTRLQIVRLGDKLVQGRLLTGTRVGKLVLIPRMPLTPSDSRLPFTM 608
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQ 99
+RRQF L ++FAM INKSQGQ+L +VG+YL +PVF+HGQ
Sbjct: 609 QRRQFSLSVAFAMIINKSQGQSLPNVGIYLLKPVFSHGQ 647
>At5g28780 putative protein
Length = 337
Score = 110 bits (276), Expect = 9e-26
Identities = 55/102 (53%), Positives = 73/102 (70%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
M +RN +Q GLCNGTRLI+ +LG+ VI A+++ G HAG++V IPR L P + T
Sbjct: 193 MQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMVSIPRFILSPPQSEHPFTL 252
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R+QFP+ + +AMTI K+QGQ+L S LYLP PVF+H QLYV
Sbjct: 253 RRQQFPMRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHVQLYV 294
>At3g31440 hypothetical protein
Length = 536
Score = 110 bits (276), Expect = 9e-26
Identities = 54/100 (54%), Positives = 68/100 (68%)
Query: 3 LRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITFER 62
L ++ GLCNG RL I L ++ A+VI G G +V IP +NL P+ + R
Sbjct: 398 LNSIKLPGGLCNGARLQITQLFTEIVEAKVITGDRIGHIVLIPTVNLTPTDTKLPFKMRR 457
Query: 63 RQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RQFPL ++FAMTINKSQGQ+L VGLYLP+PVF+HGQLYV
Sbjct: 458 RQFPLSVAFAMTINKSQGQSLEHVGLYLPKPVFSHGQLYV 497
>At5g37110 putative helicase
Length = 1307
Score = 109 bits (273), Expect = 2e-25
Identities = 54/102 (52%), Positives = 68/102 (65%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GL NGTRL I +G ++ A ++ G AG +V IPR+ L PS +
Sbjct: 1178 MLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTGDRAGHLVLIPRLKLAPSDTKLPFRM 1237
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R Q PL + FAMTINKSQGQ+L VG++L RP F+HGQLYV
Sbjct: 1238 RRTQLPLAVCFAMTINKSQGQSLKRVGIFLLRPCFSHGQLYV 1279
>At3g30420 hypothetical protein
Length = 837
Score = 109 bits (272), Expect = 3e-25
Identities = 55/103 (53%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGA-HAGEVVYIPRMNLIPSGANVSIT 59
MLLRN++Q GLCNGTRL + LG V+ A ++ + V IPR+ L P + T
Sbjct: 690 MLLRNLNQKEGLCNGTRLTVTHLGDKVLKAEILSDTTKKRKKVLIPRIILSPQDSKHPFT 749
Query: 60 FERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFP+ + +AMT+NKSQGQTL V LYLP+PVF+HGQLYV
Sbjct: 750 LRRRQFPVRMCYAMTVNKSQGQTLNRVALYLPKPVFSHGQLYV 792
>At2g07620 putative helicase
Length = 1241
Score = 109 bits (272), Expect = 3e-25
Identities = 52/102 (50%), Positives = 69/102 (66%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLL+N+D GLCNGTRL + +G +++ ARVI G + V I + + PS +
Sbjct: 1100 MLLKNIDPKGGLCNGTRLQVTQMGNHILEARVITGDRVRDKVIIIKAQISPSDTKLPFRM 1159
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
RRQFP+ ++FAM I KSQGQ+L V +YLPRPVF+HGQLYV
Sbjct: 1160 RRRQFPIAVAFAMRIKKSQGQSLKEVEIYLPRPVFSHGQLYV 1201
>At5g32630 putative protein
Length = 856
Score = 108 bits (270), Expect = 4e-25
Identities = 54/98 (55%), Positives = 68/98 (69%)
Query: 5 NVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITFERRQ 64
N +A+ LCNGTRL I + K V+ A+VI G G+++ IP +NL PS + RRQ
Sbjct: 720 NPIEATSLCNGTRLHITQIAKQVVQAKVITGDIIGDIILIPLINLTPSDTKLPFKMRRRQ 779
Query: 65 FPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
FPL +FAMTINKSQGQ+L GLYLP+ VF+HGQLYV
Sbjct: 780 FPLSDAFAMTINKSQGQSLEQAGLYLPKLVFSHGQLYV 817
>At2g14300 pseudogene; similar to MURA transposase of maize Mutator
transposon
Length = 1230
Score = 107 bits (267), Expect = 1e-24
Identities = 53/98 (54%), Positives = 69/98 (70%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN GL NGTRL IV LG ++ R++ G G++V IPRM+L PS +
Sbjct: 1133 MLLRNFYPHGGLMNGTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMSLTPSDRRLPFKM 1192
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHG 98
+RR FPL ++FAMTINKSQGQ+L +VG+YLP+ VF+HG
Sbjct: 1193 KRRHFPLSVAFAMTINKSQGQSLGNVGMYLPKAVFSHG 1230
>At4g03690 hypothetical protein
Length = 570
Score = 101 bits (251), Expect = 7e-23
Identities = 53/102 (51%), Positives = 68/102 (65%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GL NGTRL IV LG ++ R + G G++V I M L PS +
Sbjct: 430 MLLRNLDLHGGLMNGTRLQIVRLGDKLVQGRPLTGTRVGKLVLILMMPLTPSAHRLPFKM 489
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R+QFPL ++FAM INKSQ Q+L +VG+ L +PVF+HGQLYV
Sbjct: 490 RRKQFPLSVAFAMMINKSQRQSLANVGINLLKPVFSHGQLYV 531
>At2g05080 putative helicase
Length = 1219
Score = 83.6 bits (205), Expect = 2e-17
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Query: 1 MLLRNVDQASGLCNGTRLIIVSLGKNVICARVIGGAHAGEVVYIPRMNLIPSGANVSITF 60
MLLRN+D GL NGTRL I+ + ++ A ++ G A +
Sbjct: 1073 MLLRNIDPIGGLMNGTRLQIMQMSPFILQAMILTGDRAD--------------TKLPFRM 1118
Query: 61 ERRQFPLVLSFAMTINKSQGQTLTSVGLYLPRPVFTHGQLYV 102
R Q PL + FAMTINKSQGQ+L VG++LPRP F+H QLYV
Sbjct: 1119 RRTQLPLAVCFAMTINKSQGQSLKRVGIFLPRPCFSHSQLYV 1160
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.141 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,060,110
Number of Sequences: 26719
Number of extensions: 72326
Number of successful extensions: 198
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 36
length of query: 102
length of database: 11,318,596
effective HSP length: 78
effective length of query: 24
effective length of database: 9,234,514
effective search space: 221628336
effective search space used: 221628336
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148485.5