BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.1 - phase: 0
(55 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29030 expansin At-EXP5 104 7e-24
At1g26770 expansin 10 92 6e-20
At2g03090 expansin like protein 91 1e-19
At1g69530 expansin-like protein 89 4e-19
At2g40610 putative expansin 86 3e-18
At5g56320 expansin 86 4e-18
At5g05290 expansin At-EXP2 (gb|AAB38073.1) 83 3e-17
At5g02260 expansin precursor - like protein 78 7e-16
At2g28950 putative expansin 77 1e-15
At2g37640 putative expansin 77 2e-15
At4g38210 expansin -like protein 74 1e-14
At1g20190 expansin S2 precursor like protein 74 1e-14
At3g55500 expansin-like protein 73 2e-14
At2g39700 putative expansin 70 3e-13
At3g03220 putative expansin precursor 69 3e-13
At4g01630 putative expansin 65 8e-12
At5g39270 expansin-like protein 62 5e-11
At3g15370 putative expansin S2 precursor 62 5e-11
At5g39290 expansin-like protein 62 7e-11
At5g39260 expansin-like protein 59 6e-10
>At3g29030 expansin At-EXP5
Length = 255
Score = 104 bits (260), Expect = 7e-24
Identities = 47/55 (85%), Positives = 50/55 (90%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 55
MSRNWGQNWQSNSYLNGQSLSFVVTT + S+VSFNVAPP+WSFGQTYTG QF Y
Sbjct: 201 MSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFRY 255
>At1g26770 expansin 10
Length = 249
Score = 91.7 bits (226), Expect = 6e-20
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQ+LSF VTT +G ++VSFN AP WS+GQT+ G QF
Sbjct: 196 MSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQF 248
>At2g03090 expansin like protein
Length = 253
Score = 90.5 bits (223), Expect = 1e-19
Identities = 39/53 (73%), Positives = 46/53 (86%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ LNGQ+LSF VT +G ++VS N+AP SWSFGQT+TGRQF
Sbjct: 200 MSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQF 252
>At1g69530 expansin-like protein
Length = 250
Score = 89.0 bits (219), Expect = 4e-19
Identities = 41/52 (78%), Positives = 44/52 (83%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQ 52
MSRNWGQNWQSNSYLNGQSLSF VTT +G +IVS NVA WSFGQT+TG Q
Sbjct: 197 MSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQ 248
>At2g40610 putative expansin
Length = 253
Score = 86.3 bits (212), Expect = 3e-18
Identities = 38/53 (71%), Positives = 44/53 (82%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSY+N QSLSF VTT +G ++VS +VAP +W FGQTY G QF
Sbjct: 201 MSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253
>At5g56320 expansin
Length = 255
Score = 85.9 bits (211), Expect = 4e-18
Identities = 36/53 (67%), Positives = 45/53 (83%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L+GQ+LSF VTT +G +++S N P +WSFGQTYTG+QF
Sbjct: 199 MSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQF 251
>At5g05290 expansin At-EXP2 (gb|AAB38073.1)
Length = 255
Score = 82.8 bits (203), Expect = 3e-17
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+YL GQSLSF VT +G ++VS++V P W FGQT+ G QF
Sbjct: 203 MSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255
>At5g02260 expansin precursor - like protein
Length = 258
Score = 78.2 bits (191), Expect = 7e-16
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
+SRNWGQNWQSN+ L GQSLSF V T +G S S N+AP +W FGQTY+G+ F
Sbjct: 204 LSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNF 256
>At2g28950 putative expansin
Length = 257
Score = 77.4 bits (189), Expect = 1e-15
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNS L GQSLSF VT+ + S S+N+AP +W FGQT+ G+ F
Sbjct: 203 MSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNF 255
>At2g37640 putative expansin
Length = 262
Score = 77.0 bits (188), Expect = 2e-15
Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQSLSF VT + S S+NVAP +W FGQT++G+ F
Sbjct: 208 MSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNF 260
>At4g38210 expansin -like protein
Length = 256
Score = 73.9 bits (180), Expect = 1e-14
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
M+RNWGQNW S+ L GQSLSF VT G +I S++VAPP W FG TY G+QF
Sbjct: 202 MARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254
>At1g20190 expansin S2 precursor like protein
Length = 252
Score = 73.9 bits (180), Expect = 1e-14
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYT 49
MSRNWG NWQSN+YL+GQ+LSF +TT +G + V NV P SWSFGQ Y+
Sbjct: 199 MSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247
>At3g55500 expansin-like protein
Length = 260
Score = 73.2 bits (178), Expect = 2e-14
Identities = 30/53 (56%), Positives = 41/53 (76%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
++RNWGQNWQSN+ L GQSLSF VT+ + + S+N+AP +W FGQT+ G+ F
Sbjct: 206 LTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNF 258
>At2g39700 putative expansin
Length = 257
Score = 69.7 bits (169), Expect = 3e-13
Identities = 29/53 (54%), Positives = 39/53 (72%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
+SRNWGQNWQSN+ L GQ+LSF VT + + S+N+ P +W FGQT+ G+ F
Sbjct: 203 LSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNF 255
>At3g03220 putative expansin precursor
Length = 266
Score = 69.3 bits (168), Expect = 3e-13
Identities = 27/53 (50%), Positives = 40/53 (74%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
M RNWGQNW N+ L Q+LSF VT+ + ++ S+NV+P +W++GQT+ G+QF
Sbjct: 211 MGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263
>At4g01630 putative expansin
Length = 255
Score = 64.7 bits (156), Expect = 8e-12
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTY 48
MSRNWG N+QSN+YLNGQSLSF V +G + NV P +W FGQ++
Sbjct: 202 MSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249
>At5g39270 expansin-like protein
Length = 261
Score = 62.0 bits (149), Expect = 5e-11
Identities = 27/51 (52%), Positives = 35/51 (67%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGR 51
M +NWGQNW + + L GQ LSF VTT +G + +NV P +W FGQT+ GR
Sbjct: 208 MKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 258
>At3g15370 putative expansin S2 precursor
Length = 252
Score = 62.0 bits (149), Expect = 5e-11
Identities = 30/56 (53%), Positives = 37/56 (65%), Gaps = 2/56 (3%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYT--GRQFL 54
M+RNWG NWQS+ L GQ LSF VT + + NV P SW FGQT++ GRQF+
Sbjct: 197 MTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQFV 252
>At5g39290 expansin-like protein
Length = 263
Score = 61.6 bits (148), Expect = 7e-11
Identities = 26/51 (50%), Positives = 36/51 (69%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGR 51
M +NWGQNW +++ L GQ LSF VTT +G + +NV P +W FGQT+ G+
Sbjct: 210 MKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 260
>At5g39260 expansin-like protein
Length = 262
Score = 58.5 bits (140), Expect = 6e-10
Identities = 27/51 (52%), Positives = 34/51 (65%)
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGR 51
MSR WGQNW +N L GQS+S VTT +G + +V P SW FGQT+ G+
Sbjct: 209 MSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.130 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,437,218
Number of Sequences: 26719
Number of extensions: 42802
Number of successful extensions: 129
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 31
length of query: 55
length of database: 11,318,596
effective HSP length: 31
effective length of query: 24
effective length of database: 10,490,307
effective search space: 251767368
effective search space used: 251767368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148485.1