BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148484.3 + phase: 0 /pseudo
         (341 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g31850 unknown protein                                              29  3.2
At2g42850 putative cytochrome P450                                     29  4.2
At3g56150 PROBABLE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SU...    28  5.5
At5g11550 unknown protein (At5g11550)                                  28  7.2
At4g19120 ERD3 protein (ERD3)                                          28  7.2
At4g10440 putative protein                                             28  7.2
At4g28770 unknown protein                                              28  9.4

>At1g31850 unknown protein
          Length = 603

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 2/41 (4%)

Query: 276 QPGGQDYASRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSV 316
           +PGG    S P V NY R WR W   +E  +KS  N L+S+
Sbjct: 291 RPGGFWVLSGPPV-NYNRRWRGWNTTME-DQKSDYNKLQSL 329


>At2g42850 putative cytochrome P450
          Length = 485

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 16/63 (25%), Positives = 29/63 (45%)

Query: 268 RENSLIESQPGGQDYASRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSVRSLHLKTILLR 327
           +E++ I++  G  +Y +   VK  K  W+     + LS   F +F K+V  +      + 
Sbjct: 324 QEHAQIKANKGEGEYLTVEDVKKMKYSWQVVRETMRLSPPIFGSFRKAVADIDYGGYTIP 383

Query: 328 KTW 330
           K W
Sbjct: 384 KGW 386


>At3g56150 PROBABLE EUKARYOTIC TRANSLATION INITIATION FACTOR 3
           SUBUNIT 8
          Length = 900

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 14/36 (38%), Positives = 25/36 (68%), Gaps = 2/36 (5%)

Query: 135 QAPKQERVERQDQVQAMMAFHIVVTVVQRVHLMLAM 170
           + P+QER+ER+ Q+   M  H+ + +++ VHL+ AM
Sbjct: 589 KTPEQERMERRRQMPYHM--HLNLELLEAVHLICAM 622


>At5g11550 unknown protein (At5g11550)
          Length = 314

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 4  KEDSTTKPSKTSSSTQTNRKYQHQQYNHHI----QIGQPPCRP 42
          ++ +TT  S +SSST T++ +   ++ HH+        PP  P
Sbjct: 43 RKATTTSSSSSSSSTSTSQSFTQWRFPHHLDQTPSTAPPPPHP 85


>At4g19120 ERD3 protein (ERD3)
          Length = 600

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 276 QPGGQDYASRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSVRSLHLK 322
           +PGG    S P V NY+  W+ W+  IE    ++    + + S+  K
Sbjct: 285 RPGGFWVLSGPPV-NYENRWKGWDTTIEEQRSNYEKLQELLSSMCFK 330


>At4g10440 putative protein
          Length = 633

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)

Query: 276 QPGGQDYASRPSV--KNYKRGWRRWEVRIELSEKSFRNFLKSV 316
           +PGG    S P +  K Y RGW R E  ++  + S  +  KS+
Sbjct: 307 RPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSL 349


>At4g28770 unknown protein
          Length = 281

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (56%)

Query: 28 QYNHHIQIGQPPCRPTIILEP 48
          QYNHH+ +  PP +P     P
Sbjct: 38 QYNHHVPVDPPPSQPPAASSP 58


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.335    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,836,112
Number of Sequences: 26719
Number of extensions: 254387
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 8
length of query: 341
length of database: 11,318,596
effective HSP length: 100
effective length of query: 241
effective length of database: 8,646,696
effective search space: 2083853736
effective search space used: 2083853736
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (27.7 bits)