BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148470.10 - phase: 0 /pseudo
(598 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29480 hypothetical protein 71 2e-12
At3g31970 hypothetical protein 70 3e-12
At4g03650 putative reverse transcriptase 68 1e-11
At2g04670 putative retroelement pol polyprotein 68 1e-11
At3g43830 putative protein 64 2e-10
At4g03840 putative transposon protein 61 2e-09
At2g10780 pseudogene 60 3e-09
At2g06470 putative retroelement pol polyprotein 60 3e-09
At3g42290 putative protein 58 1e-08
At2g14650 putative retroelement pol polyprotein 57 2e-08
At3g43090 putative protein 54 2e-07
At2g07700 putative retroelement pol polyprotein 54 3e-07
At4g08100 putative polyprotein 49 8e-06
At4g10580 putative reverse-transcriptase -like protein 46 5e-05
At5g20210 putative protein 43 6e-04
At1g36120 putative reverse transcriptase gb|AAD22339.1 39 0.011
At1g36550 hypothetical protein 36 0.053
At1g67020 hypothetical protein 35 0.12
At4g07850 putative polyprotein 34 0.26
At2g14640 putative retroelement pol polyprotein 31 1.7
>At3g29480 hypothetical protein
Length = 718
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/106 (36%), Positives = 53/106 (49%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G P+ A W VE F +C +V H L +A+ WW S+ Q A
Sbjct: 51 FSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGDAHLWWKSVTTRRRQ--AN 108
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
M+WA F EF +Y P++ + E FLEL QG+ SV EY EF++
Sbjct: 109 MSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDREFNR 154
>At3g31970 hypothetical protein
Length = 1329
Score = 70.1 bits (170), Expect = 3e-12
Identities = 39/106 (36%), Positives = 53/106 (49%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G P+ A W VE F +C +V H L +A+ WW S+ Q A
Sbjct: 158 FFGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQ--AH 215
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
M+WA F EF +Y P++ + E FLEL QG+ SV EY EF++
Sbjct: 216 MSWADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNR 261
>At4g03650 putative reverse transcriptase
Length = 839
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/106 (35%), Positives = 52/106 (48%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G P+ A W +VE F +C +V H L +A+ WW S+ Q D
Sbjct: 156 FSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSVTARRRQAD-- 213
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
M+WA F EF +Y P + + E FLEL QG SV EY +F++
Sbjct: 214 MSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNR 259
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/106 (34%), Positives = 52/106 (48%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F P+ A W V+ F +C +V H L +A+ WW S+ Q D
Sbjct: 138 FSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQAD-- 195
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
M+WA F EF +Y P++ + E FLEL QG+ SV EY EF++
Sbjct: 196 MSWADFVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNR 241
>At3g43830 putative protein
Length = 329
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 8 TFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDA 67
TF G DP A W +E F+ M+C + L EA +WW + EQ
Sbjct: 115 TFNGGTDPVKAYNWRNMLECKFKSMRCPVEFWRDLASCYLRGEAQEWWERVKQ-REQVGC 173
Query: 68 AMTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEF 112
W+ F+ EF RY+PE+ E++FL L+QG +V +Y EF
Sbjct: 174 VDQWSFFKEEFTRRYLPEETIDDLEMKFLRLQQGTKTVRKYEKEF 218
>At4g03840 putative transposon protein
Length = 973
Score = 61.2 bits (147), Expect = 2e-09
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G DP A +W ++ F+ +C E + H L +A++WW+++ + D
Sbjct: 147 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLERDAHNWWLTVEK--RRGDEV 204
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
++A F EF +Y P + + E +L+L QG+ +V EY EF++
Sbjct: 205 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNR 250
>At2g10780 pseudogene
Length = 1611
Score = 60.5 bits (145), Expect = 3e-09
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G DP A +W ++ F+ +C E + H L +A++WW+++ + D
Sbjct: 182 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEK--RRGDEV 239
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
++A F EF +Y P + + E +L+L QG+ +V EY EF++
Sbjct: 240 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNR 285
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 60.5 bits (145), Expect = 3e-09
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G DP A +W ++ F+ +C E + H L +A++WW+++ + D
Sbjct: 147 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEK--RRGDEV 204
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
++A F EF +Y P + + E +L+L QG+ +V EY EF++
Sbjct: 205 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNR 250
>At3g42290 putative protein
Length = 462
Score = 58.2 bits (139), Expect = 1e-08
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 18 AQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAAMTWAVFRRE 77
A W V+ F +C +V H L E+A+ WW S+ Q D M+WA F E
Sbjct: 163 ADSWRSRVKRNFSSSRCLMEYRVDLAVHFLEEDAHLWWKSVTARRRQAD--MSWADFVVE 220
Query: 78 FLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
F +Y +D + E+ FLEL + SV EY EF++
Sbjct: 221 FNAKYFLQDELDRMEVRFLELTLVERSVWEYDREFNR 257
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/93 (33%), Positives = 44/93 (46%), Gaps = 2/93 (2%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G P+ A W VE F +C ++ H L +A+ WW S+ Q D
Sbjct: 156 FSGGTSPEVADSWRSRVERNFGSSRCPAEYRIDLAVHFLEGDAHLWWRSVTARRRQAD-- 213
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLELKQG 101
++WA F EF +Y P++ + E FLEL QG
Sbjct: 214 ISWADFVAEFNAKYFPQEALDRMEAHFLELTQG 246
>At3g43090 putative protein
Length = 357
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/111 (31%), Positives = 49/111 (43%), Gaps = 7/111 (6%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLL---PILEQD 65
F G DP A W K +E+ F +C + H L EEA+ WW +L P+
Sbjct: 131 FTGGIDPVKADDWRKLLENNFENARCPVEFQKDIIVHFLREEASHWWDGVLGNTPVQH-- 188
Query: 66 DAAMTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSKSS 116
+ W FR EF ++ P++ E +F EL+Q V E E S S
Sbjct: 189 --VIFWEDFREEFNRKFFPQEAMDSLEDDFEELRQDTKKVRENERELSHLS 237
>At2g07700 putative retroelement pol polyprotein
Length = 543
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
FKG ++ A KWL+++E F + +C + K + + L ++A W S+
Sbjct: 53 FKGEHNTVVADKWLRDLEMNFEISRCPDNFKRQIAVNFLDKDARIWRESV--TARNQGQM 110
Query: 69 MTWAVFRREFLNRYVPEDVRGQKEIEFLE 97
++W FRREF +Y P + R + E +F++
Sbjct: 111 ISWEAFRREFEKKYFPPEARDRLEQQFMK 139
>At4g08100 putative polyprotein
Length = 1054
Score = 48.9 bits (115), Expect = 8e-06
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 7 PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILE--Q 64
P F G +PD +W +++E +F +C + KV+ A WW L+ +
Sbjct: 97 PAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSRRRTR 156
Query: 65 DDAAMTWAVFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSKSSSLKMV*EL 124
D TW + R+VP + L QG +V EY F + +L + +L
Sbjct: 157 DYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEY---FLEMETLMLRADL 213
Query: 125 ISSGPLVIKR 134
G V+ R
Sbjct: 214 QEDGEAVMSR 223
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 46.2 bits (108), Expect = 5e-05
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 9 FKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAA 68
F G P+ A W V F +C +V H L +A+ WW S+ Q D
Sbjct: 152 FSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQTD-- 209
Query: 69 MTWAVFRREFLNRYVPED 86
M+WA F EF +Y P++
Sbjct: 210 MSWADFVAEFKAKYFPQE 227
>At5g20210 putative protein
Length = 256
Score = 42.7 bits (99), Expect = 6e-04
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 13 YDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAAMTWA 72
+D D WL+ +E F + EV KV + +A W L L Q++ +TW+
Sbjct: 70 FDGDHLFIWLEIIEVYFTLQLAPEVCKVDTAFRSMEGDALLW----LQCLRQENPTLTWS 125
Query: 73 VFRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEF 112
+ E + + D+ E + L+Q SV EYA EF
Sbjct: 126 QLKTELIEEFGGGDITASPEEQLASLRQTG-SVDEYANEF 164
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 38.5 bits (88), Expect = 0.011
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 74 FRREFLNRYVPEDVRGQKEIEFLELKQGDMSVTEYAAEFSK 114
F EF +Y P++ + E FLEL +G++SV EY EF +
Sbjct: 157 FVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKR 197
>At1g36550 hypothetical protein
Length = 353
Score = 36.2 bits (82), Expect = 0.053
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 7 PTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDW 54
P F G+ DPD +W K +E +F + E+ +VR + A W
Sbjct: 93 PPFHGKNDPDAYLEWEKNIELVFNLQHYIEINRVRVAATEFYDYALSW 140
>At1g67020 hypothetical protein
Length = 659
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 13 YDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAAMTWA 72
+D G +W +VE FRV + + K+ L A W++ + LE D W
Sbjct: 115 FDGSGVYEWFSKVERFFRVGRYQDSDKLDLVALSLEGVALKWFLREMSTLEFRD----WN 170
Query: 73 VFRREFLNRYVPEDVRGQKEI 93
F + L R+ P + E+
Sbjct: 171 SFEQRLLARFDPVKIHSSPEV 191
>At4g07850 putative polyprotein
Length = 1138
Score = 33.9 bits (76), Expect = 0.26
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 35 SEVQKVRFGTHMLAEEANDWWVSLLPILEQ--DDAAMTWAVFRREFLNRYVPEDVRGQKE 92
+E KV+ + A WW ++ + DD+ TW + R+VP +
Sbjct: 91 TEANKVKVAATEFYDYALSWWDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELH 150
Query: 93 IEFLELKQGDMSVTEYAAE 111
L QG+ +V EY E
Sbjct: 151 QRLRNLVQGNRTVEEYFKE 169
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 12 RYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLL 59
R+ KWL + + F + Q VRF T L AN WW + L
Sbjct: 110 RFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGWWQATL 157
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.370 0.166 0.609
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,824,554
Number of Sequences: 26719
Number of extensions: 321296
Number of successful extensions: 1788
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 25
length of query: 598
length of database: 11,318,596
effective HSP length: 105
effective length of query: 493
effective length of database: 8,513,101
effective search space: 4196958793
effective search space used: 4196958793
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148470.10