BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148395.6 - phase: 0 
         (1336 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g22040 LTR retrotransposon like protein                            678  0.0
At1g47650 hypothetical protein                                        669  0.0
At4g10990 putative retrotransposon polyprotein                        665  0.0
At2g16000 putative retroelement pol polyprotein                       568  e-162
At1g70010 hypothetical protein                                        552  e-157
At1g57640                                                             550  e-156
At4g23160 putative protein                                            547  e-155
At2g20460 putative retroelement pol polyprotein                       538  e-153
At4g17450 retrotransposon like protein                                530  e-150
At2g13940 putative retroelement pol polyprotein                       528  e-150
At2g23330 putative retroelement pol polyprotein                       527  e-149
At4g07810 putative polyprotein                                        511  e-144
At2g16670 putative retroelement pol polyprotein                       508  e-143
At2g24660 putative retroelement pol polyprotein                       497  e-140
At4g14460 retrovirus-related like polyprotein                         492  e-139
At1g59265 polyprotein, putative                                       470  e-132
At1g58889 polyprotein, putative                                       468  e-132
At2g15920 putative retroelement pol polyprotein                       465  e-131
At2g06840 putative retroelement pol polyprotein                       462  e-130
At4g02960 putative polyprotein of LTR transposon                      451  e-126

>At4g22040 LTR retrotransposon like protein
          Length = 1109

 Score =  678 bits (1750), Expect = 0.0
 Identities = 380/966 (39%), Positives = 557/966 (57%), Gaps = 63/966 (6%)

Query: 398  ASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNL 457
            AS H+  +++       + PV I L +GN  +A   GTV     LI ++V YV E + +L
Sbjct: 169  ASHHMTGNLELLSGMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDL 228

Query: 458  LSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVI 517
            +SV ++  +N+C+V   +    IQD++   +TG+G+   G +           F      
Sbjct: 229  ISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKRENGSFC----------FRGMENA 278

Query: 518  ALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPCIKVDSNSVCDICHYSRHKK 575
            A   +S    F     LWH RLGH S D+++ +  ++     K    +VCD C  ++  +
Sbjct: 279  AAVHTSVKAPF----DLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTR 333

Query: 576  LPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSK 635
              F L  N++   ++LIH D+WGP  T S  G +YF+T +DDYSR  W+ L   KSE  K
Sbjct: 334  DTFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQK 393

Query: 636  SVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRVLPYS 694
             +++F+  +E QF+ ++KTVR+DNG EFL M +++  KGI H+TSCV TP QNGRV    
Sbjct: 394  HLKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRV---- 449

Query: 695  NSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSET--------NKEPAMHIDNNTHIQ 746
                        +  I+         S LP++   E         N+ P+M +   +  +
Sbjct: 450  ---------ERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYE 500

Query: 747  DPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSS-----------------DSTKQ-- 787
               +   +   L    S   +   NH  D     S                  D  +Q  
Sbjct: 501  MLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKF 560

Query: 788  -ASSGILYPIKHYH----SLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSEL 842
              S  +++    +     S N  ++SH+ F  A+T   EP +Y EA     W +AM++E+
Sbjct: 561  FVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEI 620

Query: 843  SALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDT 902
             +L  N+T+  V+ PP  + +G+KWVYKIK++SDG IERYKARLV  G  Q EG+D+ +T
Sbjct: 621  ESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDET 680

Query: 903  FSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCK 962
            F+PVAK++TVR+ + +A+   WH+HQ+DV+NAFLHGDL E VYM +PQG     P++VC+
Sbjct: 681  FAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCR 740

Query: 963  LLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAG 1022
            L KSLYGLKQA R W+ KL+  L   G+ QS SD+SLF  ++D  F  +LVYVDD+I++G
Sbjct: 741  LHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISG 800

Query: 1023 NSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGA 1082
            +    + + K+ L+  F +KDLG LKYFLGIEV+ +  G  + QRKY LD++ + GLLGA
Sbjct: 801  SCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGA 860

Query: 1083 KPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTI 1142
            +P   PL+ + KL    SP   D   YRRLVG+L+YL  TRP++++ V  L+QF+  P  
Sbjct: 861  RPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQ 920

Query: 1143 THYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSL 1202
             H++ A RVV+YLK  PGQG+L    S LQ+ G+ D+D+A CP +RRS +GY   LG + 
Sbjct: 921  DHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTP 980

Query: 1203 ISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHI 1262
            ISW+ KKQ T++RSS+EAEYRA++F + EL WL  +L DL V   +   +F D++SAI +
Sbjct: 981  ISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIAL 1040

Query: 1263 AGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
            + NPV HERTKH+E+DCHF+R+ +   I     + S  QLAD  TK L  K    FL KL
Sbjct: 1041 SVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKL 1100

Query: 1323 NMIDLY 1328
             ++D++
Sbjct: 1101 GILDVH 1106



 Score =  101 bits (252), Expect = 3e-21
 Identities = 44/152 (28%), Positives = 86/152 (55%)

Query: 30  YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
           Y + A+D   +V   P+L  +NY  WA   + AL ++ KF F+DG+IP P D  P+ + W
Sbjct: 21  YDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW 80

Query: 90  NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
              N L+ SW+  +++  +  +I   + A D+W ++++RFS  +  +  +++ ++ + KQ
Sbjct: 81  LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQ 140

Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPH 181
           +  +V  ++  L  +W+ + +Y P  +CA  H
Sbjct: 141 EGMTVEGYYGKLNKIWDNINSYRPLRICASHH 172


>At1g47650 hypothetical protein
          Length = 1409

 Score =  669 bits (1725), Expect = 0.0
 Identities = 377/955 (39%), Positives = 541/955 (56%), Gaps = 84/955 (8%)

Query: 393  IVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAE 452
            ++DSGA  H+      F +    +   + LP G        GT+  +  ++ +N+L++ E
Sbjct: 333  VIDSGAIHHVSHDKSLFLNLDTSVVSAVNLPAGPTVRISGVGTLRLNDDILLKNILFIPE 392

Query: 453  FKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFN 512
            F+LNL+S+  L  D    V FD   C IQD    +M G G  I  LY L++         
Sbjct: 393  FRLNLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIANLYVLDI--------- 443

Query: 513  HQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPCIKVDS--NSVCDICHY 570
              P+++++        +   ++WH RLGH S  RL  +       K  +  +  C +CH 
Sbjct: 444  EDPIVSVNA-------VVDISMWHRRLGHASLQRLDVISDSLGTTKPKNKGSDYCHVCHL 496

Query: 571  SRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTK 630
            ++ +KLPF       +  ++L+H DIWGP S  ++ G+KYF+T +DD+SR TWI L + K
Sbjct: 497  AKQRKLPFPSQNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRNK 556

Query: 631  SEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
            SEV      FI  +ENQ+  +VK VR+DN PE      Y  KGI    SC ETP+QN   
Sbjct: 557  SEVLTVFPAFIEQVENQYKVRVKAVRSDNAPELKFTSLYQQKGIVSFHSCPETPEQN--- 613

Query: 691  LPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSET--------NKEPAMHIDNN 742
            L     +Q+          I+  +      S++PL    +         N+ P+  + N 
Sbjct: 614  LVVERKHQH----------ILNVSRALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLSNK 663

Query: 743  THIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPI--KHYH 800
            T           P ++ T        K  H              +A   + YP   K Y 
Sbjct: 664  T-----------PYEILTGTVPFYFAKKRH--------KFQPRSKACVFLGYPAGYKGYK 704

Query: 801  SLN----------NISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKT 850
             ++          N+    + F LA+   SE  S K  +     +  ++SE+ A+    T
Sbjct: 705  LMDLESHTVFISRNVVFHEEVFPLAVDPKSES-SLKLFTP----MVPVSSEIGAMETTHT 759

Query: 851  WIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKIT 910
            W     P   K +G KWV+ +K  +DG++ERYKARLVAKGYTQ EG+D+ DTFSPVAK+T
Sbjct: 760  WEITTLPAGKKAVGCKWVFSLKFLADGSLERYKARLVAKGYTQKEGLDYTDTFSPVAKMT 819

Query: 911  TVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPK-----PNQVCKLLK 965
            T+++L+ +++   W L QLDV+NAFL+G+L E +YM +P+G  + K     PN VC+L +
Sbjct: 820  TIKLLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKGITLPPNSVCRLKR 879

Query: 966  SLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSM 1025
            S+YGLKQASR+W++K +  LL  G+K++  DH+LFI   D  F  +LVYVDD+ +A  S 
Sbjct: 880  SIYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLFIKEYDGEFVIVLVYVDDIAIASTSE 939

Query: 1026 TEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPV 1085
                ++   L   FK++DLG LKYFLG+E+A ++ GISICQRKY L+LL  TG++  KPV
Sbjct: 940  GAAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPV 999

Query: 1086 TTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHY 1145
            + P+ P++K+ + +    DD   YRR+VGKL+YLT TR DI F V +L QF +AP  +H 
Sbjct: 1000 SVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPRTSHL 1059

Query: 1146 DTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISW 1205
              A RV++Y+KG+ GQGL +   + L L GF D+DWA CPDSRRST+G+  F+G SLISW
Sbjct: 1060 QAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRSTTGFSMFVGDSLISW 1119

Query: 1206 RAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGN 1265
            R+KKQH V+RSS+EAEYRAL+  +CEL WL  LL  L+     +PVL+ D+ +AI+IA N
Sbjct: 1120 RSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLMSLKAS-YLVPVLYSDSTTAIYIATN 1178

Query: 1266 PVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLP 1320
            PVFHERTKH+E+DCH VREKL     KLL ++++ Q +   T   PP N    LP
Sbjct: 1179 PVFHERTKHIELDCHTVREKLDNGELKLLHVRTEDQPS---TAAYPPPNLAEPLP 1230



 Score =  159 bits (401), Expect = 1e-38
 Identities = 94/289 (32%), Positives = 156/289 (53%), Gaps = 27/289 (9%)

Query: 21  DPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPT 80
           DP+Q P   +++H++D P    I+  L  +NY  W  +M  +L AKNK  F+DG++P P 
Sbjct: 59  DPTQSP---FFLHSADHPGLNIISHRLDETNYGDWNVAMLISLDAKNKSGFIDGTLPRPL 115

Query: 81  DFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISEL 140
           + D NF+ W+RC  +V SW++NSV   I +SI+ + +A D+W +L  RF+  +  R   L
Sbjct: 116 ESDKNFRLWSRCKSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLHSRFNVTNLPRTYNL 175

Query: 141 QCEIFSLKQDSRSVTEFFTALKVLWEELEA--YLPTPVCACPHRCMCITG-VMNAKHQHE 197
             EI   +Q + S++E++T LK LW++LE+   L  P         CI G  M  + + E
Sbjct: 176 TQEIQDFRQGTLSLSEYYTRLKTLWDQLESTEELDDP---------CICGKAMRLQQKAE 226

Query: 198 ITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-IPVEDSTILVN 256
             + ++ L GLNDS+ ++R QI+    LP++ +++ ++ Q   Q   S +    +   V+
Sbjct: 227 QAKIVKLLAGLNDSYAIIRRQIIAKKALPSLAEVYHILDQDNSQQGFSNVVAPPAAFQVS 286

Query: 257 SAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNK 305
            A  +         +N++    CS     GH  + CY+KHGFP  +  K
Sbjct: 287 EAMMA---------TNNDVNMLCS--EWVGHIAERCYKKHGFPLGFTPK 324


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  665 bits (1715), Expect = 0.0
 Identities = 392/1031 (38%), Positives = 555/1031 (53%), Gaps = 138/1031 (13%)

Query: 354  LQSQQASSSKV-----NLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKF 408
            L +Q ++S  +     +L +  N++T      S   N  S   WI+DSGAS H+CS +  
Sbjct: 56   LMAQTSTSGTIPFPSTSLKYENNNLTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTM 115

Query: 409  FDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNN 468
            F     +  V + LPNG       +GT+  +  LI  NVL V +FK NL+SV  L    +
Sbjct: 116  FRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVLLVPDFKFNLISVCCLVKTLS 175

Query: 469  CIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTF 528
                F  D C+IQ+ +   M G G+    LY L      FS        +L  +SS T  
Sbjct: 176  YSAHFFADCCYIQELTRGLMIGRGKTYNNLYILETQRTSFSP-------SLPAASSFTGT 228

Query: 529  LPQEAL-WHFRLGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASH 587
            +  + L WH RLG                          I HY  ++ L           
Sbjct: 229  VQDDCLLWHQRLG--------------------------IRHYLHYRNL----------- 251

Query: 588  CYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQ 647
                                  YF+T +DD +R TW+ + K KSEVS     F+  I  Q
Sbjct: 252  ----------------------YFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQ 289

Query: 648  FNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRVLPYSNSNQYFQWQYHSN 707
            +N K+K +R+DN  E     F   +G+ HQ SC  TPQQN  V  Y +  + ++     +
Sbjct: 290  YNAKIKAIRSDNVKELAFTKFVKEQGMIHQFSCAYTPQQNSVVERYPSGYKGYKVLDLES 349

Query: 708  HPI--------------------IPATEQTSSNSELPL--------------------EN 727
            H I                    +  +     NS LPL                     N
Sbjct: 350  HSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPLDDDLRADDNN 409

Query: 728  QSETNKEPAMH----IDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNS--- 780
             S +N   +      + +  + Q+   ++ +   +   +  R ++ P +LS+Y CNS   
Sbjct: 410  ASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAKAPAYLSEYHCNSVPF 469

Query: 781  -------SSDSTKQASSGIL-------YPIKHYHSLNNISASHQKFALAITDASEPISYK 826
                   +S S +  SS I        YP+    S + ++     +  A    +EP ++ 
Sbjct: 470  LSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHSYICAYNVETEPKAFT 529

Query: 827  EASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARL 886
            +A + + W +A N EL AL  NKTWI          +G KWV+ IK+  DG+IERYKARL
Sbjct: 530  QAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARL 589

Query: 887  VAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYM 946
            VA+G+TQ EGID+ +TFSPVAK  +V++L+ LA+   W L Q+DV+NAFLHG+L E +YM
Sbjct: 590  VAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYM 649

Query: 947  SVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFI 1001
            S+PQG   P         VC+LLKSLYGLKQASR+WY++L+   L   + QS +D+++F+
Sbjct: 650  SLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFV 709

Query: 1002 LHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLG 1061
              S T    +LVYVDD+++A N  + ++ +K +L  EFKIKDLG  ++FLG+E+A S  G
Sbjct: 710  KVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEG 769

Query: 1062 ISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTT 1121
            IS+CQRKY  +LL+D GL G KP + P+DP++ L ++      +  SYR LVG+LLYL  
Sbjct: 770  ISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCI 829

Query: 1122 TRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADW 1181
            TRPDI F V  LSQFL+APT  H   A +V++YLKG PGQGL++   S+L L GF+DADW
Sbjct: 830  TRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADW 889

Query: 1182 AGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKD 1241
              C DSRRS +G+C +LG+SLI+W++KKQ  V+RSS+E+EYR+L+ A+CE+ WL  LLKD
Sbjct: 890  GTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKD 949

Query: 1242 LRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQ 1301
            L V       LFCDN+SA+H+A NPVFHERTKH+EIDCH VR++++    K L + + +Q
Sbjct: 950  LHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQ 1009

Query: 1302 LADFFTKPLPP 1312
            LAD  TKPL P
Sbjct: 1010 LADILTKPLHP 1020


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  568 bits (1464), Expect = e-162
 Identities = 289/632 (45%), Positives = 407/632 (63%), Gaps = 18/632 (2%)

Query: 703  QYHSNHPIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRK 762
            Q+H    + P  +   S S L L           +    ++    P+QI   P Q++   
Sbjct: 833  QFHEE--VFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQIS--- 887

Query: 763  STRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEP 822
            S RV + P HL+DY CN+     K       YPI    S + IS SH  +   IT    P
Sbjct: 888  SQRVRKPPAHLNDYHCNTMQSDHK-------YPISSTISYSKISPSHMCYINNITKIPIP 940

Query: 823  ISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERY 882
             +Y EA     W +A+++E+ A+    TW     P   K +G KWV+ +K  +DG +ERY
Sbjct: 941  TNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERY 1000

Query: 883  KARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSE 942
            KARLVAKGYTQ EG+D+ DTFSPVAK+TT+++L+ +++   W L QLDV+NAFL+G+L E
Sbjct: 1001 KARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEE 1060

Query: 943  NVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDH 997
             ++M +P+G    K      N V +L +S+YGLKQASR+W++K +  LL  G+K++  DH
Sbjct: 1061 EIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDH 1120

Query: 998  SLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAH 1057
            +LF+   D  F  +LVYVDD+++A  S     ++   LD  FK++DLG LKYFLG+EVA 
Sbjct: 1121 TLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVAR 1180

Query: 1058 SKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLL 1117
            +  GISICQRKY L+LL+ TG+L  KPV+ P+ P++K+ +D+    +DI  YRR+VGKL+
Sbjct: 1181 TTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLM 1240

Query: 1118 YLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFT 1177
            YLT TRPDI F V +L QF +AP  TH   A RV++Y+KGT GQGL +   S L L GF 
Sbjct: 1241 YLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFA 1300

Query: 1178 DADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLY 1237
            D+DWA C DSRRST+ +  F+G SLISWR+KKQHTV+RSS+EAEYRAL+ A+CE+ WL  
Sbjct: 1301 DSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFT 1360

Query: 1238 LLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIK 1297
            LL  L+     +P+L+ D+ +AI+IA NPVFHERTKH+++DCH VRE+L     KLL ++
Sbjct: 1361 LLVSLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVR 1419

Query: 1298 SQSQLADFFTKPLPPKNFHSFLPKLNMIDLYN 1329
            ++ Q+AD  TKPL P  F     K++++++++
Sbjct: 1420 TEDQVADILTKPLFPYQFEHLKSKMSILNIFS 1451



 Score =  378 bits (970), Expect = e-104
 Identities = 226/691 (32%), Positives = 354/691 (50%), Gaps = 52/691 (7%)

Query: 21  DPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPT 80
           DP+Q P   +++H++D P    I+  L  +NY  W+ +M  +L AKNK  F+DG++  P 
Sbjct: 56  DPTQSP---FFLHSADHPGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPL 112

Query: 81  DFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISEL 140
           + D NF+ W+RCN +V SW++NSV   I +SI+ + +A D+W +L  RF+  +  R   L
Sbjct: 113 ESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNL 172

Query: 141 QCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITR 200
             EI   +Q + S++E++T LK LW++L++       A    C C    M  + + E  +
Sbjct: 173 TQEIQDFRQGTLSLSEYYTRLKTLWDQLDS-----TEALDEPCTC-GKAMRLQQKAEQAK 226

Query: 201 SIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-IPVEDSTILVNSAG 259
            ++FL GLN+S+ +VR QI+    LP++ +++ ++ Q   Q   S +    +   V+   
Sbjct: 227 IVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSEIT 286

Query: 260 KSQGRGRGN---GNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIE 316
           +S           N  + G+  CSF  R GH  + CY+KHGFPP +  K  A       E
Sbjct: 287 QSPSMDPTVCYVQNGPNKGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAG------E 340

Query: 317 QNEEREDL--DDSKSCKGNSNTEPSFG-ITKEQYEQLVTLLQSQ-----------QASSS 362
           + ++ + L  + ++S + N++ E   G ++KEQ +Q + +  SQ            ++S 
Sbjct: 341 KLQKPKPLAANVAESSEVNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQ 400

Query: 363 KVNLSHVTNHVTSGITRTSYTMNHS-SFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIK 421
             NL    +  T           H+ S  TW++DSGA+ H+      F S    +   + 
Sbjct: 401 SDNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVN 460

Query: 422 LPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQ 481
           LP G        GT+  +  ++ +NVL++ EF+LNL+S+  L  D    V FD + C IQ
Sbjct: 461 LPTGPTVKISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQ 520

Query: 482 DKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGH 541
           D    +M G G  +  LY L++G Q                S S   +   ++WH RLGH
Sbjct: 521 DLIKGRMLGQGRRVANLYLLDVGDQ----------------SISVNAVVDISMWHRRLGH 564

Query: 542 LSNDRLLRMQQHFPCI--KVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGP 599
            S  RL  +         K   +  C +CH ++ +KL F  S       ++L+H D+WGP
Sbjct: 565 ASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGP 624

Query: 600 ISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDN 659
            S  ++ G+KYF+T +DD+SR TW+ L KTKSEV      FI  +ENQ+  KVK VR+DN
Sbjct: 625 FSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDN 684

Query: 660 GPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
            PE     FY+ KGI    SC ETP+QN  V
Sbjct: 685 APELKFTSFYAEKGIVSFHSCPETPEQNSVV 715


>At1g70010 hypothetical protein
          Length = 1315

 Score =  552 bits (1422), Expect = e-157
 Identities = 284/619 (45%), Positives = 406/619 (64%), Gaps = 23/619 (3%)

Query: 720  NSELPLENQSETNKEPAMHIDNNTHIQ-----DPTQIEHEPQQLNTRKSTRVSQKPNHLS 774
            N   P++ QS  +  P+   D+++ ++     +PT    EP   + + S R ++KP +L 
Sbjct: 707  NPTPPMQRQSSDHVNPS---DSSSSVEILPSANPTNNVPEP---SVQTSHRKAKKPAYLQ 760

Query: 775  DYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCW 834
            DY C+S   ST        + I+ + S + I+  +  F   +    EP +Y EA +   W
Sbjct: 761  DYYCHSVVSSTP-------HEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVW 813

Query: 835  VKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQV 894
              AM +E   L    TW     P + + IG +W++KIK+ SDG++ERYKARLVA+GYTQ 
Sbjct: 814  RDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQK 873

Query: 895  EGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHS 954
            EGID+ +TFSPVAK+ +V++L+ +A+     L QLD++NAFL+GDL E +YM +PQG  S
Sbjct: 874  EGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYAS 933

Query: 955  PK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFT 1009
             +     PN VC+L KSLYGLKQASR+WY K +  LL  G+ QS  DH+ F+  SD  F 
Sbjct: 934  RQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFL 993

Query: 1010 ALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKY 1069
             +LVY+DD+I+A N+   +D +K+ +   FK++DLG+LKYFLG+E+  S  GI I QRKY
Sbjct: 994  CVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKY 1053

Query: 1070 CLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFV 1129
             LDLL +TG LG KP + P+DPS+    D+     ++  YRRL+G+L+YL  TRPDI F 
Sbjct: 1054 ALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFA 1113

Query: 1130 VQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRR 1189
            V +L+QF  AP   H     ++++Y+KGT GQGL +   S+LQL  + +AD+  C DSRR
Sbjct: 1114 VNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRR 1173

Query: 1190 STSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKL 1249
            STSGYC FLG SLI W+++KQ  V++SS+EAEYR+LS A+ EL WL   LK+L+V  +K 
Sbjct: 1174 STSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKP 1233

Query: 1250 PVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKP 1309
             +LFCDN++AIHIA N VFHERTKH+E DCH VRE+L + +F+L  I ++ Q+AD FTKP
Sbjct: 1234 TLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKP 1293

Query: 1310 LPPKNFHSFLPKLNMIDLY 1328
            L P +FH  + K+ +++++
Sbjct: 1294 LYPSHFHRLISKMGLLNIF 1312



 Score =  345 bits (884), Expect = 1e-94
 Identities = 217/637 (34%), Positives = 314/637 (49%), Gaps = 78/637 (12%)

Query: 59  MRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENA 118
           M  ++ AKNK  FVDGSIP P D DP  K W RCN +V SW++NSV   I  SI++   A
Sbjct: 1   MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTA 60

Query: 119 IDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCA 178
             +W +L  RF +    R+ +L+ +I SL+Q +  ++ + T  + LWEEL +    P   
Sbjct: 61  AAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVP--- 117

Query: 179 CPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQH 238
                     V +   + E  R I FL GLND +D VRSQIL+   LP+++++F+M+ Q 
Sbjct: 118 --------RTVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQD 169

Query: 239 ERQFKISIPVEDS-TILVNSAGKSQGRGRGNGNSNSNGKRS-CSFCGRDGHTIDICYRKH 296
           E Q    I      T  V        +   NG++    +R  CS+C R GH  D CY+KH
Sbjct: 170 ETQRSARISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCYKKH 229

Query: 297 GFPPNYGNKN-FAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQ 355
           G+P ++ +K  F K + S+       E ++++    G+        +T  Q +QLV+ L 
Sbjct: 230 GYPTSFKSKQKFVKPSISANAAIGSEEVVNNTSVSTGD--------LTTSQIQQLVSFLS 281

Query: 356 SQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPI 415
           S+    S      V                HS        S +SD               
Sbjct: 282 SKLQPPSTPVQPEV----------------HSI-------SVSSD--------------- 303

Query: 416 IPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDN 475
                  P+ +  +   SG+V+    LI  +VL++ +FK NLLSV  L     C + FD 
Sbjct: 304 -------PSSSSTVCPISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDE 356

Query: 476 DKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALW 535
             C +QD +   M G+G+ +  LY ++L S      +H      + SS +   +    LW
Sbjct: 357 TSCVLQDATRELMVGMGKQVANLYIVDLDS-----LSHPG----TDSSITVASVTSHDLW 407

Query: 536 HFRLGHLSNDRLLRMQQ--HFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIH 593
           H RLGH S  +L  M     FP  K +++  C +CH S+ K LPF    NK+S  ++LIH
Sbjct: 408 HKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIH 467

Query: 594 FDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVK 653
            D WGP S  +  G++YF+T +DDYSR TW+ L + KS+V   +  F+  +ENQF   +K
Sbjct: 468 IDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIK 527

Query: 654 TVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
            VR+DN PE     FY SKGI    SC ETPQQN  V
Sbjct: 528 GVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVV 564


>At1g57640
          Length = 1444

 Score =  550 bits (1418), Expect = e-156
 Identities = 286/622 (45%), Positives = 405/622 (64%), Gaps = 6/622 (0%)

Query: 709  PIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQ 768
            PIIP   Q SS+   P E  S ++ +P +   +     D       P  +  R+S+R +Q
Sbjct: 824  PIIPEINQESSS---PSEFVSLSSLDPFL-ASSTVQTADLPLSSTTPAPIQLRRSSRQTQ 879

Query: 769  KPNHLSDYVCNSSS--DSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYK 826
            KP  L ++V N+ S    + +ASS  LYPI+ Y   +  ++SH+ F  A+T   EP +Y 
Sbjct: 880  KPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYN 939

Query: 827  EASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARL 886
            EA     W +AM++E+ +L  N+T+  V+ PP  + +G+KWVYKIK++SDG IERYKARL
Sbjct: 940  EAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARL 999

Query: 887  VAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYM 946
            V  G  Q EG+D+ +TF+PVAK++TVR+ + +A+   WH+HQ+DV+NAFLHGDL E VYM
Sbjct: 1000 VVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYM 1059

Query: 947  SVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDT 1006
             +PQG     P++VC+L KSLYGLKQA R W+ KL+  L   G+ QS SD+SLF  ++D 
Sbjct: 1060 KLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDG 1119

Query: 1007 CFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQ 1066
             F  +LVYVDD+I++G+    + + K+ L+  F +KDLG LKYFLGIEV+ +  G  + Q
Sbjct: 1120 IFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQ 1179

Query: 1067 RKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDI 1126
            RKY LD++ + GLLGA+P   PL+ + KL    SP   D   YRRLVG+L+YL  TRP++
Sbjct: 1180 RKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPEL 1239

Query: 1127 AFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPD 1186
            ++ V  L+QF+  P   H++ A RVV+YLK  PGQG+L    S LQ+ G+ D+D+A CP 
Sbjct: 1240 SYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPL 1299

Query: 1187 SRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKC 1246
            +RRS +GY   LG + ISW+ KKQ TV+RSS+EAEYRA++F + EL WL  +L DL V  
Sbjct: 1300 TRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSH 1359

Query: 1247 NKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFF 1306
             +   +F D++SAI ++ NPV HERTKH+E+DCHF+R+ +   I     + S  QLAD  
Sbjct: 1360 VQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADIL 1419

Query: 1307 TKPLPPKNFHSFLPKLNMIDLY 1328
            TK L  K    FL KL ++D++
Sbjct: 1420 TKALGEKEVRYFLRKLGILDVH 1441



 Score =  301 bits (770), Expect = 2e-81
 Identities = 196/694 (28%), Positives = 336/694 (48%), Gaps = 98/694 (14%)

Query: 30  YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
           Y + A+D   +V   P+L  +NY  WA   + AL ++ KF F+DG+IP P D  P+ + W
Sbjct: 21  YDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW 80

Query: 90  NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
              N L+ SW+  +++  +  +I   + A D+W ++++RFS  +  +  +++ ++ + KQ
Sbjct: 81  LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQ 140

Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
           +  +V  ++  L  +W+ + +Y P  +C C  RC+C  G    K++ +     ++L GLN
Sbjct: 141 EGMTVEGYYGKLNKIWDNINSYRPLRICKCG-RCICNLGTDQEKYRED-DMVHQYLYGLN 198

Query: 210 DS-FDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGN 268
           ++ F  +RS +    PLP + +++++V Q E         E+ T +   A + + R    
Sbjct: 199 ETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDMVNNRSSNEERTDVTAFAVQMRPRSEVI 258

Query: 269 GNSNSNG-----KRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVN-NSSIEQNEER- 321
               +N      K+ C+ C R GH+ + C+   G+P  +G++   K N N S  +   R 
Sbjct: 259 SEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGRGRF 318

Query: 322 ----------------------EDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQA 359
                                    +       +S+ +   G+T EQ+  +V LL + + 
Sbjct: 319 GPGFNGGQPRPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGR- 377

Query: 360 SSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVH 419
           S +K N +H T   T  +           F +WI+D+GAS H+  +++       + PV 
Sbjct: 378 SDNKSN-AHETQSGTCSL-----------FTSWILDTGASHHMTGNLELLSDMRSMSPVL 425

Query: 420 IKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCF 479
           I L +GN  +A   GTV     LI ++V YV E + +L+SV ++  +N+C          
Sbjct: 426 IILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHC---------- 475

Query: 480 IQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRL 539
                                                  ++ ++  T+      LWH RL
Sbjct: 476 ---------------------------------------VNAAAVHTSVKAPFDLWHRRL 496

Query: 540 GHLSNDRLLRM--QQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIW 597
           GH S D+++ +  ++     K    +VCD C  ++  +  F LS N++   ++LIH D+W
Sbjct: 497 GHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVW 555

Query: 598 GPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRT 657
           GP    S  G +YF+T +DDYSR  W+ L   KSE  K +++FI  +E QF+ ++K VR+
Sbjct: 556 GPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKIVRS 615

Query: 658 DNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
           DNG EFL M +++  KGI H+TSCV TP QNGRV
Sbjct: 616 DNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRV 649


>At4g23160 putative protein
          Length = 1240

 Score =  547 bits (1409), Expect = e-155
 Identities = 270/546 (49%), Positives = 371/546 (67%), Gaps = 12/546 (2%)

Query: 745  IQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNN 804
            I     I+++  + +   S R ++KP +L DY C+S +  T       ++ I  + S   
Sbjct: 16   IMPSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLT-------IHDISQFLSYEK 68

Query: 805  ISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIG 864
            +S  +  F + I  A EP +Y EA +   W  AM+ E+ A+    TW     PPN KPIG
Sbjct: 69   VSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 128

Query: 865  SKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSW 924
             KWVYKIK+ SDGTIERYKARLVAKGYTQ EGIDF +TFSPV K+T+V++++A+++I ++
Sbjct: 129  CKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNF 188

Query: 925  HLHQLDVNNAFLHGDLSENVYMSVPQGV-----HSPKPNQVCKLLKSLYGLKQASRKWYE 979
             LHQLD++NAFL+GDL E +YM +P G       S  PN VC L KS+YGLKQASR+W+ 
Sbjct: 189  TLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFL 248

Query: 980  KLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF 1039
            K +  L+  G+ QS SDH+ F+  + T F  +LVYVDD+I+  N+   +D +K+ L   F
Sbjct: 249  KFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCF 308

Query: 1040 KIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDN 1099
            K++DLG LKYFLG+E+A S  GI+ICQRKY LDLL +TGLLG KP + P+DPS+     +
Sbjct: 309  KLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHS 368

Query: 1100 SPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTP 1159
                 D  +YRRL+G+L+YL  TR DI+F V +LSQF  AP + H     +++ Y+KGT 
Sbjct: 369  GGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 428

Query: 1160 GQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSE 1219
            GQGL +   +++QL  F+DA +  C D+RRST+GYC FLG+SLISW++KKQ  V++SS+E
Sbjct: 429  GQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488

Query: 1220 AEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDC 1279
            AEYRALSFA+ E+ WL    ++L++  +K  +LFCDN +AIHIA N VFHERTKH+E DC
Sbjct: 489  AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548

Query: 1280 HFVREK 1285
            H VRE+
Sbjct: 549  HSVRER 554


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  538 bits (1387), Expect = e-153
 Identities = 272/571 (47%), Positives = 378/571 (65%), Gaps = 17/571 (2%)

Query: 765  RVSQKPNHLSDYVCN--SSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEP 822
            R+++ P HL DY C   +  DS         +PI    S + IS SH  +   I+    P
Sbjct: 897  RITKFPAHLQDYHCYFVNKDDS---------HPISSSLSYSQISPSHMLYINNISKIPIP 947

Query: 823  ISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERY 882
             SY EA     W  A++ E+ A+    TW     PP  K +G KWV+ +K  +DG++ER+
Sbjct: 948  QSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERF 1007

Query: 883  KARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSE 942
            KAR+VAKGYTQ EG+D+ +TFSPVAK+ TV++L+ +++   W+L+QLD++NAFL+GDL E
Sbjct: 1008 KARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEE 1067

Query: 943  NVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDH 997
             +YM +P G    K     PN VC+L KS+YGLKQASR+W+ K +  LL  G+++   DH
Sbjct: 1068 TIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDH 1127

Query: 998  SLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAH 1057
            +LF+    + F  LLVYVDD+++A  +      +   L   FK+++LG LKYFLG+EVA 
Sbjct: 1128 TLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVAR 1187

Query: 1058 SKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLL 1117
            +  GIS+ QRKY L+LL    +L  KP + P+ P+I+L +++    +D   YRRLVGKL+
Sbjct: 1188 TSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLM 1247

Query: 1118 YLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFT 1177
            YLT TRPDI F V +L QF +AP   H     +V++Y+KGT GQGL +  +  L L G+T
Sbjct: 1248 YLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYT 1307

Query: 1178 DADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLY 1237
            DADW  CPDSRRST+G+  F+GSSLISWR+KKQ TV+RSS+EAEYRAL+ ASCE+ WL  
Sbjct: 1308 DADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLST 1367

Query: 1238 LLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIK 1297
            LL  LRV  + +P+L+ D+ +A++IA NPVFHERTKH+EIDCH VREKL     KLL +K
Sbjct: 1368 LLLALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVK 1426

Query: 1298 SQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
            ++ Q+AD  TKPL P  F   L K+++ +++
Sbjct: 1427 TKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457



 Score =  377 bits (969), Expect = e-104
 Identities = 235/706 (33%), Positives = 364/706 (51%), Gaps = 75/706 (10%)

Query: 21  DPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPT 80
           DP+Q P   +++H++D P    I+  L  + Y  W+ +MR +L AKNK  FVDGS+P P 
Sbjct: 60  DPTQSP---FFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPL 116

Query: 81  DFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISEL 140
           + DPNF+ W+RCN +V SW++NSV   I +SI+ L +A D+W +L +RF+  +  R   L
Sbjct: 117 ESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNL 176

Query: 141 QCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITR 200
             EI  L+Q + S++E++T LK LW++L++       A    C C   V     + E  +
Sbjct: 177 TQEIQDLRQGTMSLSEYYTLLKTLWDQLDS-----TEALDDPCTCGKAV-RLYQKAEKAK 230

Query: 201 SIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQ------------FKIS--- 245
            ++FL GLN+S+ +VR QI+    LP++ +++ ++ Q   Q            F++S   
Sbjct: 231 IMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVS 290

Query: 246 -IPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGN 304
             P+    I+   +G ++GR             +CSFC R GH  + CY+KHGFPP +  
Sbjct: 291 HSPITSPEIMYVQSGPNKGRP------------TCSFCNRVGHIAERCYKKHGFPPGFTP 338

Query: 305 KNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQ------- 357
           K  +       +    +  L   K          +F  + +Q + L+ L  SQ       
Sbjct: 339 KGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNF--SPDQIQNLIALFSSQLQPQIVS 396

Query: 358 -QASSSKVNLSHVTNHVTSGITRTSYT--------MNHSSFG--TWIVDSGASDHICSSI 406
            Q +SS+   S   +   SGI  +  T        ++H+S    TW++DSGA+ H+    
Sbjct: 397 PQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHDR 456

Query: 407 KFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMD 466
           K F +    I   + LP G        GTV  +  +I +NVL++ EF+LNL+S+  L  D
Sbjct: 457 KLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTD 516

Query: 467 NNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSST 526
               V FD   C IQD +     G G+ I  LY L+  S         P I+++      
Sbjct: 517 LGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQS---------PAISVNA----- 562

Query: 527 TFLPQEALWHFRLGHLSNDRLLRMQQHFPCI--KVDSNSVCDICHYSRHKKLPFKLSMNK 584
             +   ++WH RLGH S  RL  + +       K   ++ C +CH ++ KKL F  + N 
Sbjct: 563 --VVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNI 620

Query: 585 ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNI 644
            +  +EL+H D+WGP S  ++ G+KYF+T +DD+SR TWI L K+KS+V      FI  +
Sbjct: 621 CNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLV 680

Query: 645 ENQFNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
           ENQ++ +VK+VR+DN  E    +FY +KGI    SC ETP+QN  V
Sbjct: 681 ENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVV 726


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  530 bits (1364), Expect = e-150
 Identities = 270/622 (43%), Positives = 382/622 (61%), Gaps = 39/622 (6%)

Query: 712  PATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPN 771
            P  +  +   +LPLE  S  +  P   + ++  +     +  +P       S R  + P 
Sbjct: 841  PLLQFPARTDDLPLEQTSIIDTHPHQDVSSSKAL-----VPFDPL------SKRQKKPPK 889

Query: 772  HLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQ 831
            HL D+                       H  NN +     F   IT+A  P  Y EA   
Sbjct: 890  HLQDF-----------------------HCYNNTTEPFHAFINNITNAVIPQRYSEAKDF 926

Query: 832  DCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGY 891
              W  AM  E+ A+    TW  V  PPN K IG KWV+ IKH +DG+IERYKARLVAKGY
Sbjct: 927  KAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGY 986

Query: 892  TQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG 951
            TQ EG+D+ +TFSPVAK+T+VR+++ LA+   W +HQLD++NAFL+GDL E +YM +P G
Sbjct: 987  TQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPG 1046

Query: 952  V-----HSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDT 1006
                   +  P+ +C+L KS+YGLKQASR+WY KL+  L   G+++S +DH+LFI +++ 
Sbjct: 1047 YADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANG 1106

Query: 1007 CFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQ 1066
                +LVYVDD+++  NS   + +  A L   FK++DLG  KYFLGIE+A S+ GISICQ
Sbjct: 1107 VLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQ 1166

Query: 1067 RKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDI 1126
            RKY L+LL  TG LG+KP + PLDPS+KL++++  P  D  SYR+LVGKL+YL  TRPDI
Sbjct: 1167 RKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDI 1226

Query: 1127 AFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPD 1186
            A+ V  L QF +APT  H     +V++YLKGT GQGL +  D +  L G+TD+D+  C D
Sbjct: 1227 AYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTD 1286

Query: 1187 SRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKC 1246
            SRR  + YC F+G  L+SW++KKQ TV+ S++EAE+RA+S  + E+ WL  L  D +V  
Sbjct: 1287 SRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPF 1346

Query: 1247 NKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFF 1306
                 L+CDN +A+HI  N VFHERTK +E+DC+  RE ++    K + +++  Q+AD  
Sbjct: 1347 IPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPL 1406

Query: 1307 TKPLPPKNFHSFLPKLNMIDLY 1328
            TK + P  FH  + K+ + +++
Sbjct: 1407 TKAIHPAQFHKLIGKMGVCNIF 1428



 Score =  285 bits (730), Expect = 9e-77
 Identities = 207/706 (29%), Positives = 315/706 (44%), Gaps = 117/706 (16%)

Query: 30  YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
           Y++H+SD P    ++ +L  +NY++W+ +MR +L AKNK  FVDGS+P P   D  FK W
Sbjct: 68  YFLHSSDHPGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFKIW 127

Query: 90  NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
           +RCN +V +W++N V               ++WN+L  RF   +  R  +L+  I +LKQ
Sbjct: 128 SRCNSMVKTWLLNVV--------------TEMWNDLFSRFRVSNLPRKYQLEQSIHTLKQ 173

Query: 150 DSRSVTEFFTALKVLWEEL--EAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTG 207
            +  ++ ++T  K LWE+L     L    C C H       V     + E +R I+FL G
Sbjct: 174 GNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEH-------VKELLEEAETSRIIQFLMG 226

Query: 208 LNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIP----------VEDSTILVNS 257
           LND+F  +R QIL M P P + +I++M+ Q E Q  +  P          V+ S I+ + 
Sbjct: 227 LNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQVQASPIIDSQ 286

Query: 258 AGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPP--------NYGNKNFAK 309
              +QG         S  K  CS+C + GH +D CY+KHG+PP          G+ N A 
Sbjct: 287 VNMAQG---------SYKKPKCSYCNKLGHLVDKCYKKHGYPPGSKWTKGQTIGSTNLAS 337

Query: 310 -----VNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKV 364
                VN +  E+ +  E+    +     S       I         T   S  AS S  
Sbjct: 338 TQLQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHIASAS-PMPTTSSASISASPSVP 396

Query: 365 NLSHVTNHVTSGITRTSYTMNHSSFGT--------WIVDSGASDHICSSIKFFDSYAPII 416
            +S ++    S  +   Y M  SS           W++DSGA+ H+  +   + ++  + 
Sbjct: 397 MISQISGTFLSLFSNAYYDMLISSVSQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLE 456

Query: 417 PVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDND 476
              ++LPN         G +  S  +   NVLY+ EFK NL+S                 
Sbjct: 457 NTFVRLPNDCTVKIAGIGFIQLSDAISLHNVLYIPEFKFNLIS----------------- 499

Query: 477 KCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQS-----SSSTTFLPQ 531
                + +   M G G  +  LY L+     F++ NH   +  + S     S  ++ +  
Sbjct: 500 -----ELTKELMIGRGSQVGNLYVLD-----FNENNHTVSLKGTTSMCPEFSVCSSVVVD 549

Query: 532 EALWHFRLGH--LSNDRLLRMQQHFPCIKVDSN-----SVCDICHYSRHKKLPFKLSMNK 584
              WH RLGH   S   LL    +    K++        VC +CH S+ K L F+   N 
Sbjct: 550 SVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNM 609

Query: 585 ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNI 644
            S  ++L+H D WGP S  +              +  TWI L K KS+V      FI  +
Sbjct: 610 CSAAFDLVHIDTWGPFSVPT--------------NDATWIYLLKNKSDVLHVFPAFINMV 655

Query: 645 ENQFNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
             Q+  K+K+VR+DN  E    D +++ GI    SC ETP+QN  V
Sbjct: 656 HTQYQTKLKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQNSVV 701


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  528 bits (1361), Expect = e-150
 Identities = 278/583 (47%), Positives = 373/583 (63%), Gaps = 17/583 (2%)

Query: 761  RKSTRVSQKPNHLSDYV---------------CNSSSDSTKQASSGILYPIKHYHSLNNI 805
            RKS R +  P  L+DYV                + S  ST    S  L+P+  Y S    
Sbjct: 918  RKSKRATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKS--LFPLTDYVSDAAF 975

Query: 806  SASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGS 865
            S+SH+ +  AITD  EP  +KEA Q   W  AM +E+ AL  NKTW  VD PP    IGS
Sbjct: 976  SSSHRAYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGS 1035

Query: 866  KWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWH 925
            +WV+K K+ SDGT+ERYKARLV +G  QVEG D+ +TF+PV ++TTVR L+   + N W 
Sbjct: 1036 QWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWE 1095

Query: 926  LHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFL 985
            ++Q+DV+NAFLHGDL E VYM +P G     P++VC+L KSLYGLKQA R W++KL+  L
Sbjct: 1096 VYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSL 1155

Query: 986  LLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLG 1045
            L  G+ QS  D+SLF    +     +L+YVDD+++ GN    + + K  L   F +KDLG
Sbjct: 1156 LRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLG 1215

Query: 1046 KLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDD 1105
            KLKYFLGIEV+    GI + QRKY LD++ D+G LG++P  TPL+ +  L  D+ P   D
Sbjct: 1216 KLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSD 1275

Query: 1106 ILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLF 1165
               YRRLVG+LLYL  TRP++++ V  L+QF+  P   H+D A RVV+YLKG+PGQG+L 
Sbjct: 1276 PKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILL 1335

Query: 1166 RRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRAL 1225
              D  L L  + D+DW  CP +RRS S Y   LG S ISW+ KKQ TV+ SS+EAEYRA+
Sbjct: 1336 NADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAM 1395

Query: 1226 SFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREK 1285
            S+A  E++WL  LLK+L ++ +    L+CD+++AIHIA NPVFHERTKH+E DCH VR+ 
Sbjct: 1396 SYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDA 1455

Query: 1286 LQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
            ++  I     +++  QLAD FTK L    F   + KL + +L+
Sbjct: 1456 VRDGIITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLH 1498



 Score =  347 bits (890), Expect = 3e-95
 Identities = 215/686 (31%), Positives = 340/686 (49%), Gaps = 56/686 (8%)

Query: 30  YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
           Y + +SD P +V  +  L+  NY+ WA  M  AL AK K  F++G+IP P   DPN++ W
Sbjct: 32  YTLASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYENW 91

Query: 90  NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
              N ++  WI  S+E  +  ++ F+ +A  +W +LK+RFS G+ +RI +++ ++ S +Q
Sbjct: 92  TAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSCRQ 151

Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
           D ++V E++  L  LWEE   Y P  VC C   C C       K + E  +  +F+ GL+
Sbjct: 152 DGQAVIEYYGRLSNLWEEYNIYKPVTVCTC-GLCRCGATSEPTKEREE-EKIHQFVLGLD 209

Query: 210 DS-FDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDS----------------- 251
           +S F  + + ++ M+PLP++ +I+S V++ E++   S+ V +                  
Sbjct: 210 ESRFGGLCATLINMDPLPSLGEIYSRVIREEQRL-ASVHVREQKEEAVGFLARREQLDHH 268

Query: 252 TILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVN 311
           + +  S+ +S+  G    NS   G+ +CS CGR GH    C++  GFP  +  +N  + +
Sbjct: 269 SRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGS 328

Query: 312 NS------SIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVN 365
           N              +  +  + +   NS+  P F  T+E    L  L++ +  S S  N
Sbjct: 329 NGRGRGGRGSNGGRGQGQVMAAHATSSNSSVFPEF--TEEHMRVLSQLVKEKSNSGSTSN 386

Query: 366 LSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNG 425
                         +      +  G  I+DSGAS H+  ++    +  P+ P  +   +G
Sbjct: 387 ------------NNSDRLSGKTKLGDIILDSGASHHMTGTLSSLTNVVPVPPCPVGFADG 434

Query: 426 NMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSN 485
           + A A   G +  S  +   NVL+V      L+SV KL     C+ TF +  CF+QD+S+
Sbjct: 435 SKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSS 494

Query: 486 LKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSND 545
             + G GE   G+Y+L          +  P    + +  S      +ALWH RLGH S  
Sbjct: 495 KTLIGSGEERGGVYYLT---------DVTPAKIHTANVDS-----DQALWHQRLGHPSFS 540

Query: 546 RLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSI 605
            L  +          ++  CD+C  ++  +  F  S+NK   C+ LIH D+WGP    + 
Sbjct: 541 VLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPAS 600

Query: 606 HGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL- 664
            G  YF+T +DDYSR  W  L   KSEV + + NF+   E QF   VK VR+DNG EF+ 
Sbjct: 601 CGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMC 660

Query: 665 MPDFYSSKGIEHQTSCVETPQQNGRV 690
           +  ++   GI HQTSCV TPQQNGRV
Sbjct: 661 LSSYFRENGIIHQTSCVGTPQQNGRV 686


>At2g23330 putative retroelement pol polyprotein
          Length = 1496

 Score =  527 bits (1357), Expect = e-149
 Identities = 273/571 (47%), Positives = 366/571 (63%), Gaps = 3/571 (0%)

Query: 759  NTRKSTRVSQKPNHLSDYVCNS---SSDSTKQASSGILYPIKHYHSLNNISASHQKFALA 815
            NT    + +    H    V  S   +S S    S   LYP+  + + +  SA+H  F  A
Sbjct: 921  NTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAA 980

Query: 816  ITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKS 875
            I D++EP  +K+A     W +AM+ E+ AL  N TW   D P   K I SKWVYK+K+ S
Sbjct: 981  ILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNS 1040

Query: 876  DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAF 935
            DGT+ER+KARLV  G  Q EG+DF +TF+PVAK+TTVR ++A+A+   W +HQ+DV+NAF
Sbjct: 1041 DGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAF 1100

Query: 936  LHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSAS 995
            LHGDL E VYM +P G     P++VC+L KSLYGLKQA R W+ KL+  L   G+ QS  
Sbjct: 1101 LHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYE 1160

Query: 996  DHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEV 1055
            D+SLF L +      +LVYVDD+I+AGN++  IDR K+ L   F +KDLGKLKYFLG+EV
Sbjct: 1161 DYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEV 1220

Query: 1056 AHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGK 1115
            +    G  + QRKY LD++K+TGLLG KP   P+  + KL     P   +   YRRLVG+
Sbjct: 1221 SRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGR 1280

Query: 1116 LLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLG 1175
             +YLT TRPD+++ V  LSQF+ AP + H++ A R+V+YLKG+P QG+  R DS L +  
Sbjct: 1281 FIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINA 1340

Query: 1176 FTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWL 1235
            + D+D+  CP +RRS S Y  +LG S ISW+ KKQ TV+ SS+EAEYRA+++   EL+WL
Sbjct: 1341 YCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWL 1400

Query: 1236 LYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLP 1295
              LLKDL V  +    L CD+++AIHIA NPVFHERTKH+E DCH VR+ +   +     
Sbjct: 1401 KALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEH 1460

Query: 1296 IKSQSQLADFFTKPLPPKNFHSFLPKLNMID 1326
            I ++ Q+AD  TK LP   F   L  L + D
Sbjct: 1461 IYTEDQVADLLTKSLPRPTFERLLSTLGVTD 1491



 Score =  334 bits (856), Expect = 2e-91
 Identities = 221/690 (32%), Positives = 326/690 (47%), Gaps = 81/690 (11%)

Query: 30  YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
           Y ++ASD P ++  + VL  +NY  W+  ++  L AK K  F+DGSIP P   DP    W
Sbjct: 22  YLINASDNPGALISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPKPAA-DPELSLW 80

Query: 90  NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
              N ++  WI  S++ +I  ++ F+  A  +W  L+ RFS G+ +R + L+ EI +  Q
Sbjct: 81  IAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAACTQ 140

Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
           D + V  ++  L  LWEEL+ Y     C C           + + + E  R  +FL GL+
Sbjct: 141 DGQPVLAYYGRLIKLWEELQNYKSGRECKCE-------AASDIEKEREDDRVHKFLLGLD 193

Query: 210 DSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-----IPVEDSTILVNSAGKSQGR 264
             F  +RS I  + PLP + +++S V++ E+    S     +  E     V S+   + R
Sbjct: 194 SRFSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDVVKTEAIGFSVQSSTTPRFR 253

Query: 265 GRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDL 324
            +            C+ C R GH +  C+  HG+P  +  +N     N    +       
Sbjct: 254 DKST--------LFCTHCNRKGHEVTQCFLVHGYPDWWLEQN--PQENQPSTRGRGSNGR 303

Query: 325 DDSKSCKGNSNTEPSF-----------------GITKEQYEQLVTLLQSQQASSSKVNLS 367
             S    GN ++ P+                  G   +Q  QL++LLQ+Q+ SSS   LS
Sbjct: 304 GSSSGRGGNRSSAPTTRGRGRANNAQAAAPTVSGDGNDQIAQLISLLQAQRPSSSSERLS 363

Query: 368 HVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNM 427
             T  +T G+                +D+GAS H+            I P  +  P+G  
Sbjct: 364 GNTC-LTDGV----------------IDTGASHHMTGDCSILVDVFDITPSPVTKPDGKA 406

Query: 428 AIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLK 487
           + A   GT+         +VL+V +F   L+SV KL    + I  F +  CF+QD+    
Sbjct: 407 SQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDRFLRT 466

Query: 488 MTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRL 547
           + G GE  EG+Y+               V+A     +S+ F     LWH RLGH S   L
Sbjct: 467 LIGAGEEREGVYYFT------------GVLAPRVHKASSDFAISGDLWHRRLGHPSTSVL 514

Query: 548 L------RMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPIS 601
           L      R  Q F   K+DS   CD C  S+  +  F +S NK   C+ LIH D+WGP  
Sbjct: 515 LSLPECNRSSQGFD--KIDS---CDTCFRSKQTREVFPISNNKTMECFSLIHGDVWGPYR 569

Query: 602 THSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGP 661
           T S  G  YF+T +DDYSR  W  L  +K+EVS+ ++NF    E QF  +VK  RTDNG 
Sbjct: 570 TPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGT 629

Query: 662 EFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
           EF+ +  ++ + GI HQTSCV+TPQQNGRV
Sbjct: 630 EFMCLTPYFQTHGILHQTSCVDTPQQNGRV 659


>At4g07810 putative polyprotein
          Length = 1366

 Score =  511 bits (1316), Expect = e-144
 Identities = 393/1350 (29%), Positives = 634/1350 (46%), Gaps = 180/1350 (13%)

Query: 108  IAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVL--- 164
            +   +V+  +A  +W +L+ R  Q +  +I  +Q ++  L Q S  ++ ++T L V    
Sbjct: 67   LGSGMVYFYDAHLLWLKLEGRSRQSNLSKIYSVQNQLDRLHQGSLDLSAYYTRLTVTFIR 126

Query: 165  -----WEELEAYLPTPVCACPHRCMCITGV--MNAKHQHEITRSIRFLTGLNDSFDLVRS 217
                 WEEL+ +   P C C  +C C +    +    +H I   +RFL  LN+SF   R 
Sbjct: 127  SQCLSWEELKNFEELPSCTCG-KCTCGSNDRWIQLYEKHNI---VRFLMRLNESFIQARR 182

Query: 218  QILLMNPLPTINKIFSMVMQHERQFKI-SIPVEDSTILVNSAGKSQGRGRGNGNSNSNGK 276
            QIL+M+PLP    +++ + Q ++Q    S+P  +  +   S  + + +     N     +
Sbjct: 183  QILMMDPLPEFTNLYNFISQDDQQRSFNSMPTTEKPVFQASITQQKPK---FFNQQGKSR 239

Query: 277  RSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEERED---LDDSKSCKGN 333
              C++CG  GHT   CY+ HG+PP Y        NN          +   +    +  GN
Sbjct: 240  PLCTYCGLLGHTNARCYKLHGYPPGYKVPVGTCYNNDKSRGQPYPHNGIHMSHLITYNGN 299

Query: 334  S-------NTEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNH 386
            S       N    + +  + Y        +Q  + + + +S  ++     +T  S T+NH
Sbjct: 300  SYAPIVQANNNAPYALYNQAYNGNSYAPMAQNFAGNHI-ISDGSSMSAGNVTSESPTVNH 358

Query: 387  S----SFGTWIVDSGASDHICSSIKFF----------DSYAPIIPVHIKLPNGNMAIAKF 432
            S    + G   +  G+S H    +               Y  I P  +   +G+++    
Sbjct: 359  SVNMMNSGRGFL--GSSSHGREQVNQMVTQLNTQLQGSPYQVIRPPTVSQNHGSISAQGM 416

Query: 433  SGTVN-----FSPGLIARNVLYVAEFKLN---LLSVPKLC----MDNNCIVTFDNDKCFI 480
            S   +     F P LI     +  + + +      +   C    +D+  I   +N K  I
Sbjct: 417  SPIPSHYISAFEPCLIIPQNTWSLDTRASCHICCDLSLFCNVYHIDHTNITLPNNIKISI 476

Query: 481  QDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQE-ALWHFRL 539
                 +K+     L    Y  +    + S+  H P ++  Q+ SS   +PQ+ + +H ++
Sbjct: 477  NIAETVKLNDRLILHLVFYVPSFHFNLISRLGH-PSMSRVQALSSNLHIPQKLSEFHCKI 535

Query: 540  GHLSNDRLLRM-------QQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMN--KASHCYE 590
             HLS  + L         ++ FP I +DS+       + +  +  F  ++   ++ +  E
Sbjct: 536  CHLSKQKCLSFVSNNKIYEEPFPLIHIDSDVTTIFPEFLKLVQTQFGCTVKSIRSDNAPE 595

Query: 591  LIHFDI---WGPISTHSI-----------HGHKYFITAL------DDYSRFTWIMLCKTK 630
            L   D+   +G    HS              H++ +          +     W     T 
Sbjct: 596  LQFKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLAYWPECVSTA 655

Query: 631  SEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFYSS-------KGIEHQTSCVET 683
            + +        L  ++ +    K +   N         Y+S       K  E  TSCV  
Sbjct: 656  AFLINRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTERATSCVFI 715

Query: 684  PQQNG----RVLPYSNSNQYFQWQYHSNHPIIPATEQTSS-------NSELPLENQSETN 732
              ++G    ++L   ++          +  I P  ++ S+       +S LP+  + + N
Sbjct: 716  GYESGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVSFFDDSVLPISEKQKEN 775

Query: 733  KEPAMHIDNNTHIQ-----DPTQIEHEPQQLNTRK----STRVS--------------QK 769
            +       N  +++     +PT +   P   +TR     ST V+              +K
Sbjct: 776  RFQIYDYFNVLNLEVCPVIEPTTV---PAHTHTRSLAPLSTTVTNDQFGNDMDNTLMPRK 832

Query: 770  PNHLSDYVCNSSSDSTKQASSGILYPIKH----YHSLNNISASHQKFALAITDASEPISY 825
                  Y+      +  +  S  L+   H    + S + +S  ++ F  AI    EP ++
Sbjct: 833  ETRAPSYLSQYHCSNVLKEPSSSLHGTAHSLSSHLSYDKLSNEYRLFCFAIIAEKEPTTF 892

Query: 826  KEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKAR 885
            KEA+    W+ AMN EL AL    T          + IG KWV+KIK+KSDGTIERYKAR
Sbjct: 893  KEAALLQKWLDAMNVELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYKAR 952

Query: 886  LVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVY 945
            LVA GYTQ EG+D+ DTFSP+AK+T+VR+++ALA+I++W + Q+DV NAFLHGD  E +Y
Sbjct: 953  LVANGYTQQEGVDYIDTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIY 1012

Query: 946  MSVPQGVHSPKPNQ------VCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSL 999
            M +PQG ++P+  +      VC+L+KSLYGLKQASR+W+ K +G L+  G+ QS  D +L
Sbjct: 1013 MQLPQG-YTPRKGELLPKRPVCRLVKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPTL 1071

Query: 1000 FILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSK 1059
            F+   +  F ALLVYVDD++L  N  + +  +K +L  EFK+KDLG+ +YFLG+E+A SK
Sbjct: 1072 FVRVREDTFLALLVYVDDIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARSK 1131

Query: 1060 LGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYL 1119
             GISI QRKY L+LL++ G LG KPV TP++ ++KL Q++     D   YR+L+G+L+YL
Sbjct: 1132 EGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYL 1191

Query: 1120 TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDA 1179
            T TRPDI F V +L+Q+++AP   H   A R+++YLK  PGQG+ +   S L    F DA
Sbjct: 1192 TVTRPDICFAVNKLNQYMSAPREPHLMAARRILRYLKNDPGQGVFYPASSTLTFRAFADA 1251

Query: 1180 DWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLL 1239
            DW+ CP+S          +  S++ W         + S+EA             WL+  L
Sbjct: 1252 DWSNCPESS---------ISISIVFW--------LKLSTEA-------------WLVLSL 1281

Query: 1240 KDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQ 1299
             D          ++ D++SA+HIA N VFHE TK+   D H VREK+     K L + ++
Sbjct: 1282 PD-------TIFVYYDDESALHIAKNSVFHESTKNFLHDIHVVREKVAVGFIKTLHVDTE 1334

Query: 1300 SQLADFFTKPLPPKNFHSFLPKLNMIDLYN 1329
              + D  TKPL    F+  L K+ +  LY+
Sbjct: 1335 HNIVDLLTKPLTALRFNYLLSKMGLHHLYS 1364


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  508 bits (1307), Expect = e-143
 Identities = 271/569 (47%), Positives = 354/569 (61%), Gaps = 28/569 (4%)

Query: 761  RKSTRVSQKPNHLSDYVCNSS-SDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDA 819
            R+STR    P  L D+V N++    +    + ILY ++        SASH  +       
Sbjct: 789  RQSTRNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYV------ 842

Query: 820  SEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTI 879
                                  + A   N TW   D PP  + IGS+WVYK+KH SDG++
Sbjct: 843  ---------------------AIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSV 881

Query: 880  ERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGD 939
            ERYKARLVA G  Q EG D+ +TF+PVAK+ TVR+ + +A   +W +HQ+DV+NAFLHGD
Sbjct: 882  ERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGD 941

Query: 940  LSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSL 999
            L E VYM +P G  +  PN+VC+L K+LYGLKQA R W+EKLT  L   G++QS +D+SL
Sbjct: 942  LREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSL 1001

Query: 1000 FILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSK 1059
            F L   +    +L+YVDD+I+ GNS     + K  L   F +KDLG LKYFLGIEVA S 
Sbjct: 1002 FTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARST 1061

Query: 1060 LGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYL 1119
             GI ICQRKY LD++ +TGLLG KP   PL+ + KL    SP   D   YRRLVG+L+YL
Sbjct: 1062 TGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYL 1121

Query: 1120 TTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDA 1179
              TR D+AF V  L++F+  P   H+  A RVV+YLK  PGQG+  RR    Q+ G+ D+
Sbjct: 1122 AVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDS 1181

Query: 1180 DWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLL 1239
            DWAG P SRRS +GY    G S ISW+ KKQ TV++SS+EAEYRA+SF + EL WL  LL
Sbjct: 1182 DWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLL 1241

Query: 1240 KDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQ 1299
              L V   +  ++ CD++SAI+IA NPVFHERTKH+EID HFVR++  + +     + + 
Sbjct: 1242 FSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTT 1301

Query: 1300 SQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
            SQLAD FTKPL    F +F  KL + +LY
Sbjct: 1302 SQLADIFTKPLGRDCFSAFRIKLGIRNLY 1330



 Score =  212 bits (540), Expect = 1e-54
 Identities = 152/534 (28%), Positives = 251/534 (46%), Gaps = 65/534 (12%)

Query: 170 AYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDS-FDLVRSQILLMNPLPTI 228
           A+ P  +C C   C+C  G +  K + E  +   FL+GL+D+ F  VRS ++   P+  +
Sbjct: 68  AFKPVRICKCGG-CVCDLGALQEKDREE-DKVHEFLSGLDDALFRTVRSSLVSRIPVQPL 125

Query: 229 NKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQG----RGRGNGNSNSNGKRSCSFCGR 284
            +++++V Q E   +    V D    VN+          +GRG+    S     C  C R
Sbjct: 126 EEVYNIVRQEEDLLRNGANVLDDQREVNAFAAQMRPKLYQGRGDEKDKS---MVCKHCNR 182

Query: 285 DGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITK 344
            GH  + CY   G+P  +G++  ++    S++              +G +N+    G   
Sbjct: 183 SGHASESCYAVIGYPEWWGDRPRSR----SLQTRG-----------RGGTNSSGGRGRGA 227

Query: 345 EQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICS 404
             Y   VT+        +   L+       +G+T + +    S     I++SG  D    
Sbjct: 228 AAYANRVTVPNHDTYEQANYALTDEDRDGVNGLTDSQWRTIKS-----ILNSG-KDAATE 281

Query: 405 SIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLC 464
            +   D      P+ I L +G   I+   GTV     L+  +V YV EF+ +L+S+ +L 
Sbjct: 282 KLTDMD------PILIVLADGRERISVKEGTVRLGSNLVMISVFYVEEFQSDLISIGQLM 335

Query: 465 MDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSS 524
            +N C++   +    +QD+++  + G G  + G +                    ++ ++
Sbjct: 336 DENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTFHFRS----------------TEIAA 379

Query: 525 STTFLPQE--ALWHFRLGHLSNDRLLRMQQHFP--CIKVDS---NSVCDICHYSRHKKLP 577
           S T   ++   LWH R+GH +     R+    P   + V S   N  CD+CH ++  +  
Sbjct: 380 SVTVKEEKNYELWHSRMGHPA----ARVVSLIPESSVSVSSTHLNKACDVCHRAKQTRNS 435

Query: 578 FKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSV 637
           F LS+NK    +ELI+ D+WGP  T S  G +YF+T +DDYSR  W+ L   KSE    +
Sbjct: 436 FPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHL 495

Query: 638 QNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
           +NF    + QFN K+KTVR+DNG EFL +  F+  +G+ H+ SCV TP++N RV
Sbjct: 496 KNFFAMTDRQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRV 549



 Score = 33.1 bits (74), Expect = 1.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 9  NGGVNGGAAPVQDPSQQPGNV---YYVHASDGPSSVAITPVLSHSNYHSWARSMRRAL 63
          N   N    P+ +P+ +       Y + +++ P +V   P+L+ SNY  WA SM+ AL
Sbjct: 7  NVNTNTNTNPIPNPTVEVRRTILPYDLTSANNPCAVISHPLLTGSNYDEWACSMKTAL 64


>At2g24660 putative retroelement pol polyprotein
          Length = 1156

 Score =  497 bits (1280), Expect = e-140
 Identities = 284/667 (42%), Positives = 386/667 (57%), Gaps = 41/667 (6%)

Query: 677  QTSCVETPQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSETNKEPA 736
            QT  V  P  +  V P S ++     +  S+    P     S ++   +++  +    P 
Sbjct: 484  QTDSVFEPDSDSDVAPASIASDLQNSRVDSSDSSTPDKNLASGDTLAQIDDSPDIVSTPN 543

Query: 737  MHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSS----------DSTK 786
             +      +  P      P+Q   RK  R  ++   L DYV  +++          DS+ 
Sbjct: 544  RNNQPLFVVDSPFVEATSPRQ---RK--RQIRQSVRLQDYVLYNATVSPINPHALPDSSS 598

Query: 787  QASSGI-----LYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSE 841
            Q+SS +     LYP+  Y S +  SA H+ F  AIT   EP  +KEA +   W  AM  E
Sbjct: 599  QSSSMVQGTSSLYPLSDYVSDDCFSAGHKAFLAAITANDEPKHFKEAVRIKVWNDAMFKE 658

Query: 842  LSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFD 901
            + AL  NKTW  VD PP    IGS+WVYK K+ +DG+IERYKARLV +G  QVEG D+ +
Sbjct: 659  VDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYNE 718

Query: 902  TFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVC 961
            TF+PV K+TTVR L+ L + N W ++Q+DVNNAFLHGDL E VYM +P G     P++VC
Sbjct: 719  TFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVC 778

Query: 962  KLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILA 1021
            +L KSLYGLKQA R W++KL+  LL  G+ Q   D+S F    +     +LVYVDD+++ 
Sbjct: 779  RLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLIC 838

Query: 1022 GNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLG 1081
            GN    + + K  L   F +KDLGKLKYFLGIEV+    GI + QRKY LD++ D+G LG
Sbjct: 839  GNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLG 898

Query: 1082 AKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPT 1141
             +P  TPL+ +  L  D+ P   D   YRRLVG+LLYL  TRP++++ V  LSQF+  P 
Sbjct: 899  CRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTPR 958

Query: 1142 ITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSS 1201
              H   A R+V++LKG+PGQG+L   D++LQL  + D+D+  CP +RRS S Y   LG S
Sbjct: 959  EAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCPKTRRSLSAYVVLLGGS 1018

Query: 1202 LISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIH 1261
             ISW+ KKQ TV+ SS+EAEYRA+S A  E++WL  LLK+L                   
Sbjct: 1019 PISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKEL------------------- 1059

Query: 1262 IAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPK 1321
               NPVFHERTKH+E DCH VR+ ++  I     +++  QLAD FTK L    F   + K
Sbjct: 1060 --ANPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADIFTKALGRSQFLYLMSK 1117

Query: 1322 LNMIDLY 1328
            L + DL+
Sbjct: 1118 LGIQDLH 1124



 Score =  142 bits (357), Expect = 2e-33
 Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 23/225 (10%)

Query: 471 VTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLP 530
           +T +N K    D+ +  + G GE  +G+Y+L   + V +   H   ++  Q         
Sbjct: 41  LTHENLKACKLDRFSRTLIGSGEERDGVYYL---TDVATAKIHTAKVSSDQ--------- 88

Query: 531 QEALWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV----CDICHYSRHKKLPFKLSMNKAS 586
             ALWH RLGH S   L  +    P +   S SV    CD+C  ++  +  F +S NK+ 
Sbjct: 89  --ALWHQRLGHPSFSVLSSL----PVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSI 142

Query: 587 HCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIEN 646
            C+ LIH D+WGP    S  G  YF+T +DD+SR  W  L   KSEV   + NF++  E 
Sbjct: 143 ECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEK 202

Query: 647 QFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
           QF   VK +R+DNG EF+ +  ++   GI HQTSCV TPQQNGRV
Sbjct: 203 QFGKSVKVLRSDNGTEFMCLASYFREHGIVHQTSCVGTPQQNGRV 247


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  492 bits (1267), Expect = e-139
 Identities = 263/637 (41%), Positives = 380/637 (59%), Gaps = 93/637 (14%)

Query: 717  TSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDY 776
            +SS+S LP      +N E    ID+N               +   +S R ++ P++LS+Y
Sbjct: 913  SSSSSALPSIIPPSSNTE-TQDIDSNA--------------VPITRSKRTTRAPSYLSEY 957

Query: 777  VCNS-SSDSTKQASSGIL-------------------YPIKHYHSLNNISASHQKFALAI 816
             C+   S ST   +   +                   YPI    S +  +   Q +  A 
Sbjct: 958  HCSLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAY 1017

Query: 817  TDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSD 876
               +EP ++ +A + + W++    EL A+  NKTW     PP+   +G KWV+ IK+  D
Sbjct: 1018 NTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPD 1077

Query: 877  GTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFL 936
            GT+ERYKARLVA+G+TQ EGIDF DTFSPVAK+T+ ++++ LA+I  W L Q+DV++AFL
Sbjct: 1078 GTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFL 1137

Query: 937  HGDLSENVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYK 991
            HGDL E ++MS+PQG   P      PN VC+LLKS+YGLKQASR+WY++           
Sbjct: 1138 HGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR----------- 1186

Query: 992  QSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFL 1051
                            F A LVY+DD+++A N+  E++ +KA+L  EFKIKDLG  ++FL
Sbjct: 1187 ----------------FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFL 1230

Query: 1052 GIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRR 1111
            G                          LLG KP + P+DP++ L +D   P  +  +YR+
Sbjct: 1231 G--------------------------LLGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRK 1264

Query: 1112 LVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQL 1171
            L+G+LLYLT TRPDI + V QLSQF++AP+  H   A +V++Y+K  PGQGL++  D ++
Sbjct: 1265 LIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEI 1324

Query: 1172 QLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCE 1231
             L GF+DADWA C D+RRS SG+C +LG+SLISW++KKQ   +RSS+E+EYR+++ A+CE
Sbjct: 1325 CLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCE 1384

Query: 1232 LQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIF 1291
            + WL  LLKDL +       LFCDN+SA+H + NPVFHERTKH+EIDCH VR++++    
Sbjct: 1385 IIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNL 1444

Query: 1292 KLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
            K L + +++Q AD  TK L P  FH  L ++++  L+
Sbjct: 1445 KALHVPTENQHADILTKALHPGPFHHLLRQMSLSSLF 1481



 Score =  204 bits (519), Expect = 3e-52
 Identities = 110/307 (35%), Positives = 172/307 (55%), Gaps = 8/307 (2%)

Query: 5   NTVVNGGVNGGAAPVQDPSQQPGNVYYVHASDGPSSVAITPVLSH-SNYHSWARSMRRAL 63
           N V    +N G   ++ P  Q  N YY+H++D    + ++  L+  S++HSW RS+  AL
Sbjct: 10  NPVTRPPINNGDQ-IRYPVDQYENPYYLHSADHAGLILVSDRLTTASDFHSWRRSILMAL 68

Query: 64  GAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWN 123
             +NK  F++G+I  P +   +F AW+RCN +V +W+MNSV+  I QS++++     +WN
Sbjct: 69  NVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQSLLYIATVQGIWN 128

Query: 124 ELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRC 183
            L  RF Q D  RI +++ ++  ++Q S  ++ ++TAL  LWEE   Y+  PVC C  RC
Sbjct: 129 NLLSRFKQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHRNYVELPVCTC-GRC 187

Query: 184 MCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFK 243
            C   V   +H  + +R  +FL  LN+ FD  R  IL++ P+PTI + F+MV Q ERQ  
Sbjct: 188 ECDAAV-KWEHLQQRSRVTKFLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQDERQRN 246

Query: 244 IS-IPVEDSTILVNSAGKSQGRGRGNGNSNS---NGKRSCSFCGRDGHTIDICYRKHGFP 299
           +  +   DS    N++  ++         N+   N K  C+ CG+ GHTI  CY+ HG+P
Sbjct: 247 VKPLTRVDSVAFQNTSMINEDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCYKVHGYP 306

Query: 300 PNYGNKN 306
           P     N
Sbjct: 307 PGMKTGN 313



 Score =  175 bits (444), Expect = 1e-43
 Identities = 122/381 (32%), Positives = 170/381 (44%), Gaps = 79/381 (20%)

Query: 343 TKEQYEQLVTLLQSQ-------QASSSKVNLSHVTNHVTSGITRTSYTM----------- 384
           T +Q EQ+++  Q+Q        +SS+   L+ V+ H    +T TS T+           
Sbjct: 400 TPQQIEQMISQFQAQVQVPEPAASSSNPSPLATVSEHGFMALTSTSGTIIPFPSTSLKYE 459

Query: 385 -------NHSSFG--------TWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAI 429
                  NH+            WI+DSGAS H+CS +  F     +              
Sbjct: 460 NNDLKFQNHTLSALQKFLPSDAWIIDSGASSHVCSDLAMFRELKSV-------------- 505

Query: 430 AKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMT 489
              SGTV+ +  LI  NVL+V +FK NL+SV  L    +C   F  D C IQ+ S   M 
Sbjct: 506 ---SGTVHITQKLILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMI 562

Query: 490 GLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLR 549
           G G L   LY L   ++  S     P   L   S     L    LWH RLGH S+  L +
Sbjct: 563 GRGRLYHNLYILE--TENTSPSTSTPAACLFTGS----VLNDGHLWHQRLGHPSSVVLQK 616

Query: 550 MQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHK 609
           +                       K+L +    N AS+ ++L+H DIWGP S  SI G +
Sbjct: 617 L-----------------------KRLAYISHNNLASNPFDLVHLDIWGPFSIESIEGFR 653

Query: 610 YFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFY 669
           YF+T +DD +R TW+ + + K +VS     FI  +  QFN K+K +R+DN PE    +  
Sbjct: 654 YFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPELGFTEIV 713

Query: 670 SSKGIEHQTSCVETPQQNGRV 690
              G+ H  SC  TPQQN  V
Sbjct: 714 KEHGMLHHFSCAYTPQQNSVV 734


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  470 bits (1209), Expect = e-132
 Identities = 266/669 (39%), Positives = 379/669 (55%), Gaps = 32/669 (4%)

Query: 679  SCVETPQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSETNKEPAMH 738
            S    P +N +V   S+SN      + S+ P  P  E T+     P      T  +   H
Sbjct: 801  SSPSAPFRNSQV---SSSN--LDSSFSSSFPSSP--EPTAPRQNGPQPTTQPTQTQTQTH 853

Query: 739  IDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIK- 797
               NT   +PT     P QL    ST      +  S     SSS ++    S +++P   
Sbjct: 854  SSQNTSQNNPTN--ESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911

Query: 798  -------------HYHSLNN-----ISASHQKFALAITDA--SEPISYKEASQQDCWVKA 837
                         + HS+       I   + K++LA++ A  SEP +  +A + + W  A
Sbjct: 912  LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNA 971

Query: 838  MNSELSALNHNKTWIFVDTPPN-IKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEG 896
            M SE++A   N TW  V  PP+ +  +G +W++  K+ SDG++ RYKARLVAKGY Q  G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 897  IDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG-VHSP 955
            +D+ +TFSPV K T++RI++ +A   SW + QLDVNNAFL G L+++VYMS P G +   
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 956  KPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYV 1015
            +PN VCKL K+LYGLKQA R WY +L  +LL  G+  S SD SLF+L        +LVYV
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1151

Query: 1016 DDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLK 1075
            DD+++ GN  T +      L   F +KD  +L YFLGIE      G+ + QR+Y LDLL 
Sbjct: 1152 DDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLA 1211

Query: 1076 DTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQ 1135
             T ++ AKPVTTP+ PS KL   +     D   YR +VG L YL  TRPDI++ V +LSQ
Sbjct: 1212 RTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQ 1271

Query: 1136 FLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYC 1195
            F++ PT  H     R+++YL GTP  G+  ++ + L L  ++DADWAG  D   ST+GY 
Sbjct: 1272 FMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYI 1331

Query: 1196 FFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCD 1255
             +LG   ISW +KKQ  V RSS+EAEYR+++  S E+QW+  LL +L ++  + PV++CD
Sbjct: 1332 VYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCD 1391

Query: 1256 NQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
            N  A ++  NPVFH R KH+ ID HF+R ++Q    +++ + +  QLAD  TKPL    F
Sbjct: 1392 NVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451

Query: 1316 HSFLPKLNM 1324
             +F  K+ +
Sbjct: 1452 QNFASKIGV 1460



 Score =  171 bits (433), Expect = 3e-42
 Identities = 154/662 (23%), Positives = 290/662 (43%), Gaps = 84/662 (12%)

Query: 47  LSHSNYHSWARSMRRALGAKNKFDFVDGSIPVP-----TD----FDPNFKAWNRCNMLVH 97
           L+ +NY  W+R +           F+DGS  +P     TD     +P++  W R + L++
Sbjct: 26  LTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIY 85

Query: 98  SWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEF 157
           S ++ ++  S+  ++     A  +W  L++ ++   +  +++L+ ++    + ++++ ++
Sbjct: 86  SAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDY 145

Query: 158 FTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRS 217
              L   +++L A L  P+                 H  ++ R    L  L + +  V  
Sbjct: 146 MQGLVTRFDQL-ALLGKPM----------------DHDEQVER---VLENLPEEYKPVID 185

Query: 218 QILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKR 277
           QI   +  PT+ +I   ++ HE +    + V  +T++  +A     R     N+N+NG R
Sbjct: 186 QIAAKDTPPTLTEIHERLLNHESKI---LAVSSATVIPITANAVSHRNTTTTNNNNNGNR 242

Query: 278 SCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSC--KGNSN 335
           +  +  R+ +        +  P    + NF   NN S      +  L   + C  +G+S 
Sbjct: 243 NNRYDNRNNNN-------NSKPWQQSSTNFHPNNNQS------KPYLGKCQICGVQGHSA 289

Query: 336 TEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVD 395
              S      Q +  ++ + SQQ  S         N        + Y+ N+     W++D
Sbjct: 290 KRCS------QLQHFLSSVNSQQPPSPFTPWQPRANLALG----SPYSSNN-----WLLD 334

Query: 396 SGASDHICSSIKFFDSYAPIIPVH-IKLPNGNMAIAKFSGTVNFSPG---LIARNVLYVA 451
           SGA+ HI S       + P      + + +G+      +G+ + S     L   N+LYV 
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVP 394

Query: 452 EFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQF 511
               NL+SV +LC  N   V F      ++D +       G+  + LY   + S      
Sbjct: 395 NIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASS----- 449

Query: 512 NHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV---CDIC 568
             QPV   +  SS  T     + WH RLGH +   L  +  ++    ++ +     C  C
Sbjct: 450 --QPVSLFASPSSKAT----HSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDC 503

Query: 569 HYSRHKKLPFKLSMNKASHCYELIHFDIWG-PISTHSIHGHKYFITALDDYSRFTWIMLC 627
             ++  K+PF  S   ++   E I+ D+W  PI +H    ++Y++  +D ++R+TW+   
Sbjct: 504 LINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHD--NYRYYVIFVDHFTRYTWLYPL 561

Query: 628 KTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQ 686
           K KS+V ++   F   +EN+F  ++ T  +DNG EF+ + +++S  GI H TS   TP+ 
Sbjct: 562 KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEH 621

Query: 687 NG 688
           NG
Sbjct: 622 NG 623


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  468 bits (1205), Expect = e-132
 Identities = 265/669 (39%), Positives = 378/669 (55%), Gaps = 32/669 (4%)

Query: 679  SCVETPQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSETNKEPAMH 738
            S    P +N +V   S+SN      + S+ P  P  E T+     P      T  +   H
Sbjct: 801  SSPSAPFRNSQV---SSSN--LDSSFSSSFPSSP--EPTAPRQNGPQPTTQPTQTQTQTH 853

Query: 739  IDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIK- 797
               NT   +PT     P QL    ST      +  S     SSS ++    S +++P   
Sbjct: 854  SSQNTSQNNPTN--ESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911

Query: 798  -------------HYHSLNN-----ISASHQKFALAITDA--SEPISYKEASQQDCWVKA 837
                         + HS+       I   + K++LA++ A  SEP +  +A + + W  A
Sbjct: 912  LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNA 971

Query: 838  MNSELSALNHNKTWIFVDTPPN-IKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEG 896
            M SE++A   N TW  V  PP+ +  +G +W++  K+ SDG++ RYKAR VAKGY Q  G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPG 1031

Query: 897  IDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG-VHSP 955
            +D+ +TFSPV K T++RI++ +A   SW + QLDVNNAFL G L+++VYMS P G +   
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 956  KPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYV 1015
            +PN VCKL K+LYGLKQA R WY +L  +LL  G+  S SD SLF+L        +LVYV
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1151

Query: 1016 DDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLK 1075
            DD+++ GN  T +      L   F +KD  +L YFLGIE      G+ + QR+Y LDLL 
Sbjct: 1152 DDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLA 1211

Query: 1076 DTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQ 1135
             T ++ AKPVTTP+ PS KL   +     D   YR +VG L YL  TRPDI++ V +LSQ
Sbjct: 1212 RTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQ 1271

Query: 1136 FLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYC 1195
            F++ PT  H     R+++YL GTP  G+  ++ + L L  ++DADWAG  D   ST+GY 
Sbjct: 1272 FMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYI 1331

Query: 1196 FFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCD 1255
             +LG   ISW +KKQ  V RSS+EAEYR+++  S E+QW+  LL +L ++  + PV++CD
Sbjct: 1332 VYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCD 1391

Query: 1256 NQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNF 1315
            N  A ++  NPVFH R KH+ ID HF+R ++Q    +++ + +  QLAD  TKPL    F
Sbjct: 1392 NVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451

Query: 1316 HSFLPKLNM 1324
             +F  K+ +
Sbjct: 1452 QNFASKIGV 1460



 Score =  171 bits (433), Expect = 3e-42
 Identities = 154/662 (23%), Positives = 290/662 (43%), Gaps = 84/662 (12%)

Query: 47  LSHSNYHSWARSMRRALGAKNKFDFVDGSIPVP-----TD----FDPNFKAWNRCNMLVH 97
           L+ +NY  W+R +           F+DGS  +P     TD     +P++  W R + L++
Sbjct: 26  LTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIY 85

Query: 98  SWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEF 157
           S ++ ++  S+  ++     A  +W  L++ ++   +  +++L+ ++    + ++++ ++
Sbjct: 86  SAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDY 145

Query: 158 FTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRS 217
              L   +++L A L  P+                 H  ++ R    L  L + +  V  
Sbjct: 146 MQGLVTRFDQL-ALLGKPM----------------DHDEQVER---VLENLPEEYKPVID 185

Query: 218 QILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKR 277
           QI   +  PT+ +I   ++ HE +    + V  +T++  +A     R     N+N+NG R
Sbjct: 186 QIAAKDTPPTLTEIHERLLNHESKI---LAVSSATVIPITANAVSHRNTTTTNNNNNGNR 242

Query: 278 SCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSC--KGNSN 335
           +  +  R+ +        +  P    + NF   NN S      +  L   + C  +G+S 
Sbjct: 243 NNRYDNRNNNN-------NSKPWQQSSTNFHPNNNQS------KPYLGKCQICGVQGHSA 289

Query: 336 TEPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVD 395
              S      Q +  ++ + SQQ  S         N        + Y+ N+     W++D
Sbjct: 290 KRCS------QLQHFLSSVNSQQPPSPFTPWQPRANLALG----SPYSSNN-----WLLD 334

Query: 396 SGASDHICSSIKFFDSYAPIIPVH-IKLPNGNMAIAKFSGTVNFSPG---LIARNVLYVA 451
           SGA+ HI S       + P      + + +G+      +G+ + S     L   N+LYV 
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVP 394

Query: 452 EFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQF 511
               NL+SV +LC  N   V F      ++D +       G+  + LY   + S      
Sbjct: 395 NIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASS----- 449

Query: 512 NHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV---CDIC 568
             QPV   +  SS  T     + WH RLGH +   L  +  ++    ++ +     C  C
Sbjct: 450 --QPVSLFASPSSKAT----HSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDC 503

Query: 569 HYSRHKKLPFKLSMNKASHCYELIHFDIWG-PISTHSIHGHKYFITALDDYSRFTWIMLC 627
             ++  K+PF  S   ++   E I+ D+W  PI +H    ++Y++  +D ++R+TW+   
Sbjct: 504 LINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHD--NYRYYVIFVDHFTRYTWLYPL 561

Query: 628 KTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQ 686
           K KS+V ++   F   +EN+F  ++ T  +DNG EF+ + +++S  GI H TS   TP+ 
Sbjct: 562 KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEH 621

Query: 687 NG 688
           NG
Sbjct: 622 NG 623


>At2g15920 putative retroelement pol polyprotein
          Length = 1100

 Score =  465 bits (1197), Expect = e-131
 Identities = 248/578 (42%), Positives = 357/578 (60%), Gaps = 35/578 (6%)

Query: 765  RVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPIS 824
            RV +   HLSDYVC ++    K       YPI    S + IS SH  +   IT      +
Sbjct: 550  RVRKPSTHLSDYVCKNTQSDQK-------YPISSTISYSQISPSHMCYIDNITKILISTN 602

Query: 825  YKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKA 884
            + EA     W +A++ E+ A+     W     P + K +G KWV+ +K  +DG++ERYKA
Sbjct: 603  FPEAQGTKEWCEAVDVEIGAMESTNKWEITTLPKDKKAVGCKWVFTLKILADGSLERYKA 662

Query: 885  RLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENV 944
            RLVAKGYTQ EG+D+ +TFSPVAK+TT+++L+ + +   W L QLDV+N+FL+G+L E +
Sbjct: 663  RLVAKGYTQKEGLDYTNTFSPVAKMTTIKLLLKIYASKKWFLKQLDVSNSFLNGELEEEI 722

Query: 945  YMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSL 999
            YM +P+G    K      N VC+L +S+YGLKQASR+W++K +  LL  G+ +   DH+L
Sbjct: 723  YMKLPEGSAERKGIILPSNAVCRLKRSIYGLKQASRQWFKKFSASLLSLGFFKIHGDHTL 782

Query: 1000 FILH--SDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAH 1057
            F++    +     +LVYVDD+++A  +          L   FK++DLG LKYFL +E++ 
Sbjct: 783  FLIDCGGEYVVVLVLVYVDDIVIASTNED--------LHNLFKLRDLGDLKYFLCLEISR 834

Query: 1058 SKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLL 1117
            +++GIS+C RK   +LL   G++  KPV+ P+  ++KL + +    +D   YRR+VGKL+
Sbjct: 835  TEVGISLCHRKNAWELLASIGMINCKPVSVPMITNVKLMKADGELLEDREQYRRIVGKLM 894

Query: 1118 YLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFT 1177
             LT TRPDI                TH   A RV++Y+KG  GQGL +   S L L GF 
Sbjct: 895  DLTITRPDITL------------RTTHLQAAHRVLQYIKGIVGQGLFYSASSDLTLKGFA 942

Query: 1178 DADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLY 1237
            D+DW  C DSRRST+G+  F+G SLIS R+KKQ  V+RSS+EAEYRAL+ A+CEL  L  
Sbjct: 943  DSDWVSCADSRRSTTGFTMFVGDSLISLRSKKQRVVSRSSAEAEYRALALATCELVSLHT 1002

Query: 1238 LLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIK 1297
            LL  L      +P+LF ++ +AI+IA NPVFHERTKH EIDC+ VREK+     KLL ++
Sbjct: 1003 LLVSL-TAATSVPILFSNSTTAIYIAINPVFHERTKHTEIDCNTVREKVDDGELKLLHVR 1061

Query: 1298 SQSQLADFFTKPLPPKNFHSFLPKLNMIDLYNAKLEGG 1335
            ++ Q+AD  TKPL P  F     K+++++++ +   GG
Sbjct: 1062 TEDQVADIMTKPLSPHQFEHLKFKMSILNIFESSSSGG 1099



 Score =  195 bits (495), Expect = 2e-49
 Identities = 147/517 (28%), Positives = 236/517 (45%), Gaps = 78/517 (15%)

Query: 17  APVQDPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSI 76
           A  QDP      V     +D P    I+  L  +NY  W  +M  +L  KNK  F+DG++
Sbjct: 9   AQAQDPMVTVARV----TADHPGLNIISHRLDETNYGDWNVAMLISLDVKNKSGFIDGTL 64

Query: 77  PVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIR 136
           P P + D NF  W+RCN +            I +SI+ + +A D+W +L  RF+  +  R
Sbjct: 65  PRPLETDKNFCLWSRCNSM------------ICRSILRMNDASDIWRDLNSRFNMTNLPR 112

Query: 137 ISELQCEIFSLKQDSRSVTEFFTALKVLWEELEA--YLPTPVCACPHRCMCITGVMNAKH 194
              L  EI  L+Q + S++E++T LK LW++L++   L  P C    R            
Sbjct: 113 TYNLTQEIQDLRQGTLSLSEYYTRLKTLWDQLDSTEELDDP-CTRQKR------------ 159

Query: 195 QHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVE----- 249
                + ++FL GLN+S+ ++R QI+    LP++ +++ +V Q   Q   S  V      
Sbjct: 160 ----AKIVKFLAGLNESYAIIRRQIIAKKILPSLAEVYHIVDQDNSQQGFSNVVARPAAF 215

Query: 250 --DSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNF 307
                 + NS   +    +   N  + G+  CSFC R GH  + CY+KHGFPP +  K  
Sbjct: 216 QVSEVTITNSIDPTIYYVQ---NGPNKGRSMCSFCNRVGHIAERCYKKHGFPPRFTPKGK 272

Query: 308 A---------KVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTL----L 354
                       +N ++   E  +     KS  GN        ++KEQ +Q + +    L
Sbjct: 273 VGDKTQKPKPVASNVALATTESNDTHSGLKSLVGN--------LSKEQLQQFIAMFSSQL 324

Query: 355 QSQQASSSKVNLSHVTNHVTSGITRTSYTM-------NHS-SFGTWIVDSGASDHICSSI 406
           Q Q  S+S V  S   +++    + ++Y+         H+ S  TW++DSGA  H+   +
Sbjct: 325 QPQPHSNSAVASSSQADNIGISFSPSTYSFIGILTVAQHTLSSKTWVIDSGAIHHVNLLL 384

Query: 407 KFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMD 466
               S    +   + LP G        GT+  +   + +NVL++ EF LNL+S+  L  D
Sbjct: 385 TLNTS----VLSSVNLPAGPTVKISGVGTLRLNDDNLLKNVLFIPEFCLNLMSISSLTDD 440

Query: 467 NNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNL 503
               V F+   C IQD    +M G G  +  LY +++
Sbjct: 441 IGSRVIFNQHACEIQDLIKGRMLGHGRRVANLYVMDV 477


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score =  462 bits (1190), Expect = e-130
 Identities = 271/656 (41%), Positives = 369/656 (55%), Gaps = 53/656 (8%)

Query: 673  GIEHQTSCVETPQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSETN 732
            G  H+T+   TP  +  + P S S+        +N P  P T Q    +E P  + S  +
Sbjct: 485  GYPHETA---TPNTHDSIDPTSTSSD------ENNTPPEPVTPQ----AEQP-HSPSSIS 530

Query: 733  KEPAMHIDNNTHIQDPTQIEHE------PQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTK 786
                +H   + H +   + +H+      P+ L   K  R    P +L DYV +    S  
Sbjct: 531  SPHIVHNKGSVHSRHLNE-DHDSSSPGLPELLG--KGHRPKHPPVYLKDYVAHKVHSSPH 587

Query: 787  QASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALN 846
             +S G+       +    +SA+H  F  AI D++E   +K+      W  AM  E+ AL 
Sbjct: 588  TSSPGL----SDSNVSPTVSANHIAFMAAILDSNEQNHFKDDVLIKEWCDAMQKEIEALE 643

Query: 847  HNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPV 906
             N TW   D P   K I SKWVYK+K  SDGT+ER+KARLV  G  Q EGIDF +TF+PV
Sbjct: 644  ANHTWDVTDLPHGKKAISSKWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFKETFAPV 703

Query: 907  AKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKS 966
            AK+TTVR+L+A+A+   W + Q+DV+NAFLHGDL +                      +S
Sbjct: 704  AKMTTVRLLLAVAAAKDWDVFQMDVHNAFLHGDLEQ----------------------ES 741

Query: 967  LYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMT 1026
            LYGLKQA R W+ KL+  L   G+ QS  D+SLF L+ D      LVYVDD I+ GN++ 
Sbjct: 742  LYGLKQAPRCWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLK 801

Query: 1027 EIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVT 1086
             ID  K  L   F +KDLGKLKYFLG+EV+    G  + Q+KY LD++ + GLLG KP  
Sbjct: 802  AIDHFKEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKPSA 861

Query: 1087 TPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYD 1146
             P++   KL   +SP  D+   YRRLV + +YLT TRPD+++ V  LSQF+  P   H+ 
Sbjct: 862  VPMELHHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWH 921

Query: 1147 TACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWR 1206
               R+V+YLKG+P QG+L R D  L L  + D+D+  CP +RRS S Y  +LG + ISW+
Sbjct: 922  ATLRLVRYLKGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWK 981

Query: 1207 AKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNP 1266
             KKQ TV+ SS+EAEYRA+++   E++WL  L+  L V   +  +LFCD+Q+AIHIA NP
Sbjct: 982  TKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHIAANP 1041

Query: 1267 VFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
            VFHERTKH+E DCH VR+ +   +     I +     D  TK LP   F   L  L
Sbjct: 1042 VFHERTKHIEKDCHQVRDAVTDKVISTPHIST----TDLLTKALPRPTFERLLSTL 1093



 Score =  125 bits (315), Expect = 1e-28
 Identities = 120/495 (24%), Positives = 192/495 (38%), Gaps = 116/495 (23%)

Query: 212 FDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTI-LVNSAGKSQGRGRGNGN 270
           F  +RS+I   +PLP+ N+++S V++ ++   ++   E +    +N + K+    +    
Sbjct: 15  FAPIRSKITDEDPLPSHNRVYSRVIRGQQNLDVARSKETTNSEAINFSVKTPSAPQVAAV 74

Query: 271 SNSNGK-RSCSFCGRDGHTIDICYRKHGFPPNY----GNKNFAKVNNSSIEQNEEREDLD 325
                + RSC+ C R GH +  C+  HGFP  Y    G    +  N   + + E +    
Sbjct: 75  YAPKPRDRSCTHCHRQGHDVTDCFLVHGFPEWYYEQKGGSRVSSDNREVVSRLENKPAKR 134

Query: 326 DSKSCKGNSNTEPSFGITK---------EQYEQLVTLLQSQQASSSKVNLSHVTNHVTSG 376
           + +S KGN          +         +Q  QL++LLQ+Q+  S+   LS         
Sbjct: 135 EGRSSKGNGRGRGRVNSARAPLSSSNGSDQITQLISLLQAQRPKSTSERLS--------- 185

Query: 377 ITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTV 436
                    ++     I+DSGAS H+            IIP  +  P+G  + A    T+
Sbjct: 186 --------GNTCLTDVIIDSGASHHMTGDCSILVDVFDIIPSAVTKPDGKASCATKCVTL 237

Query: 437 NFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIE 496
             S     ++VL+V +F   L+SV KL                     +  + G GE+ E
Sbjct: 238 LLSSSYKLQDVLFVPDFDCTLISVSKLLKQTG--------------PFSRTLIGAGEVRE 283

Query: 497 GLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPC 556
            +Y+               V+  S   +S+      ALWH RLGH S   LL + +    
Sbjct: 284 RVYYFT------------GVLVASAHKTSSDSTSSGALWHRRLGHPSTSFLLSLPE---- 327

Query: 557 IKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALD 616
                      CH S          + K   C                           D
Sbjct: 328 -----------CHQS-------SKDLGKIDSC---------------------------D 342

Query: 617 DYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLM-PDFYSSKGIE 675
             SR         K  +   ++NF    + QF   V+++R+DNG EF+    ++   GI 
Sbjct: 343 TCSR--------AKQTLPSLIRNFCAMADRQFRKPVRSIRSDNGTEFMCHTSYFQEHGIL 394

Query: 676 HQTSCVETPQQNGRV 690
           H+TSCV+TPQQN RV
Sbjct: 395 HETSCVDTPQQNARV 409


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  451 bits (1160), Expect = e-126
 Identities = 255/653 (39%), Positives = 368/653 (56%), Gaps = 32/653 (4%)

Query: 684  PQQNGRVLPYSNSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSETNKEPAMHIDNNT 743
            P  NG   P   +  +     +SN PI+      + N   P  N    N        ++ 
Sbjct: 813  PSHNG---PQPTAQPHQTQNSNSNSPIL-----NNPNPNSPSPNSPNQNSPLPQSPISSP 864

Query: 744  HIQDPTQIEHEPQQLNTRKSTRVSQKPNHL---------SDYVCNSSSDSTKQASSGILY 794
            HI  P+    EP   ++  ST     P  L         +    N+ S +T+ A  GI  
Sbjct: 865  HIPTPSTSISEPNSPSS-SSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATR-AKDGIRK 922

Query: 795  PIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFV 854
            P + Y    +++A+           SEP +  +A + D W +AM SE++A   N TW  V
Sbjct: 923  PNQKYSYATSLAAN-----------SEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLV 971

Query: 855  DTPP-NIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVR 913
              PP ++  +G +W++  K  SDG++ RYKARLVAKGY Q  G+D+ +TFSPV K T++R
Sbjct: 972  PPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1031

Query: 914  ILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG-VHSPKPNQVCKLLKSLYGLKQ 972
            I++ +A   SW + QLDVNNAFL G L++ VYMS P G V   +P+ VC+L K++YGLKQ
Sbjct: 1032 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQ 1091

Query: 973  ASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIK 1032
            A R WY +L  +LL  G+  S SD SLF+L        +LVYVDD+++ GN    +    
Sbjct: 1092 APRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTL 1151

Query: 1033 AVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPS 1092
              L   F +K+   L YFLGIE      G+ + QR+Y LDLL  T +L AKPV TP+  S
Sbjct: 1152 DALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATS 1211

Query: 1093 IKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVV 1152
             KL   +     D   YR +VG L YL  TRPD+++ V +LSQ+++ PT  H++   RV+
Sbjct: 1212 PKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVL 1271

Query: 1153 KYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHT 1212
            +YL GTP  G+  ++ + L L  ++DADWAG  D   ST+GY  +LG   ISW +KKQ  
Sbjct: 1272 RYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKG 1331

Query: 1213 VARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERT 1272
            V RSS+EAEYR+++  S ELQW+  LL +L ++ +  PV++CDN  A ++  NPVFH R 
Sbjct: 1332 VVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRM 1391

Query: 1273 KHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMI 1325
            KH+ +D HF+R ++Q    +++ + +  QLAD  TKPL    F +F  K+ +I
Sbjct: 1392 KHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVI 1444



 Score =  139 bits (351), Expect = 8e-33
 Identities = 155/661 (23%), Positives = 263/661 (39%), Gaps = 103/661 (15%)

Query: 47  LSHSNYHSWARSMRRALGAKNKFDFVDGSIPVP-----TD----FDPNFKAWNRCNMLVH 97
           L+ +NY  W+R +           F+DGS P+P     TD     +P++  W R + L++
Sbjct: 26  LTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIY 85

Query: 98  SWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEF 157
           S I+ ++  S+  ++     A  +W  L++ ++   +  +++L           R +T F
Sbjct: 86  SAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQL-----------RFITRF 134

Query: 158 FTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRS 217
                    +  A L  P+                 H  ++ R    L  L D +  V  
Sbjct: 135 ---------DQLALLGKPM----------------DHDEQVER---VLENLPDDYKPVID 166

Query: 218 QILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKR 277
           QI   +  P++ +I   ++  E +    + +  + ++  +A     R   N N N N + 
Sbjct: 167 QIAAKDTPPSLTEIHERLINRESKL---LALNSAEVVPITANVVTHRNT-NTNRNQNNR- 221

Query: 278 SCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTE 337
                              G   NY N N  + N+     +  R D    K   G     
Sbjct: 222 -------------------GDNRNYNNNN-NRSNSWQPSSSGSRSDNRQPKPYLGRCQIC 261

Query: 338 PSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHS-SFGTWIVDS 396
              G + ++  QL           S  N    T+  T    R +  +N   +   W++DS
Sbjct: 262 SVQGHSAKRCPQL-------HQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDS 314

Query: 397 GASDHICSSIKFFDSYAPIIPVH-IKLPNGNMAIAKFSGTVNF---SPGLIARNVLYVAE 452
           GA+ HI S       + P      + + +G+      +G+ +    S  L    VLYV  
Sbjct: 315 GATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPN 374

Query: 453 FKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFN 512
              NL+SV +LC  N   V F      ++D +       G+  + LY   + S       
Sbjct: 375 IHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASS------ 428

Query: 513 HQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPCIKVDSNSV-CDICH 569
            Q V   +   S  T     + WH RLGH S   L  +      P +      + C  C 
Sbjct: 429 -QAVSMFASPCSKAT----HSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCF 483

Query: 570 YSRHKKLPFKLSMNKASHCYELIHFDIWG-PISTHSIHGHKYFITALDDYSRFTWIMLCK 628
            ++  K+PF  S   +S   E I+ D+W  PI   SI  ++Y++  +D ++R+TW+   K
Sbjct: 484 INKSHKVPFSNSTITSSKPLEYIYSDVWSSPIL--SIDNYRYYVIFVDHFTRYTWLYPLK 541

Query: 629 TKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF-LMPDFYSSKGIEHQTSCVETPQQN 687
            KS+V  +   F   +EN+F  ++ T+ +DNG EF ++ D+ S  GI H TS   TP+ N
Sbjct: 542 QKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHN 601

Query: 688 G 688
           G
Sbjct: 602 G 602


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,309,019
Number of Sequences: 26719
Number of extensions: 1389732
Number of successful extensions: 4971
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4069
Number of HSP's gapped (non-prelim): 402
length of query: 1336
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1225
effective length of database: 8,352,787
effective search space: 10232164075
effective search space used: 10232164075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)