BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.5 - phase: 0
(130 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g41690 hypothetical protein 96 5e-21
At3g30655 hypothetical protein, 3' partial 93 4e-20
At2g13260 putative Athila retroelement ORF1 protein 93 4e-20
At1g37060 Athila retroelment ORF 1, putative 93 4e-20
At2g07480 F9A16.15 91 1e-19
At4g07640 putative athila transposon protein 91 2e-19
At4g07780 putative athila transposon protein 91 2e-19
At2g10670 pseudogene 89 6e-19
At4g08050 89 8e-19
At2g06310 putative Athila retroelement ORF1 protein 87 2e-18
At4g03790 putative athila-like protein 86 4e-18
At2g06160 putative Athila retroelement ORF1 protein 86 5e-18
At3g32000 unknown protein 85 9e-18
At3g30630 hypothetical protein 84 2e-17
At2g10740 pseudogene 83 3e-17
At2g13250 putative Athila retroelement ORF1 protein 75 7e-15
At1g38440 hypothetical protein 75 9e-15
At3g42260 putative protein 75 1e-14
At3g32890 Athila ORF 1, putative 74 3e-14
At3g31340 Athila ORF 1, putative 66 6e-12
>At1g41690 hypothetical protein
Length = 371
Score = 95.9 bits (237), Expect = 5e-21
Identities = 48/105 (45%), Positives = 64/105 (60%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P + NNF+IK +L+ +VQ N+F LP EDP H+ F RL K N
Sbjct: 20 PHNHNQRHGIVPPPVQNNNFEIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCSLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + +L LFPF L D+A W +LP GSIT WD ++AFLA+
Sbjct: 80 GVSEDGFKLRLFPFSLGDKAHLWEKTLPQGSITTWDDCKKAFLAK 124
>At3g30655 hypothetical protein, 3' partial
Length = 660
Score = 92.8 bits (229), Expect = 4e-20
Identities = 45/93 (48%), Positives = 59/93 (63%)
Query: 25 PTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLF 84
P + NNF+IK L+ +VQ N+F LP EDP H+ F RL G K NGV+ + +L LF
Sbjct: 32 PPVQNNNFEIKSGLIAMVQGNKFHGLPMEDPLDHLDEFERLYGLTKINGVSEDGFKLRLF 91
Query: 85 PFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
PF L D+A W +LP SIT WD ++AFLA+
Sbjct: 92 PFSLGDKAHLWEKTLPQNSITAWDDCKKAFLAK 124
>At2g13260 putative Athila retroelement ORF1 protein
Length = 622
Score = 92.8 bits (229), Expect = 4e-20
Identities = 45/105 (42%), Positives = 66/105 (62%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P+ + I P ++ NNF+IK +L+N+VQ ++F L EDP H+ F L T+K N
Sbjct: 38 PNIRGNRNGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQFDMLCSTVKIN 97
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
G++ + +L LFPF L DRA W +LP SIT WDQ ++AFL++
Sbjct: 98 GISEDAFKLRLFPFSLGDRARIWEKNLPQRSITSWDQCKRAFLSK 142
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 92.8 bits (229), Expect = 4e-20
Identities = 47/105 (44%), Positives = 62/105 (58%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P + NNF+IK L+ +VQ N+F LP EDP H+ F RL K N
Sbjct: 20 PRNHNQRNGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
V+ + +L LFPF L D+A W SLP GSIT W+ ++AFLA+
Sbjct: 80 RVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAK 124
>At2g07480 F9A16.15
Length = 1012
Score = 91.3 bits (225), Expect = 1e-19
Identities = 47/105 (44%), Positives = 62/105 (58%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P I NNF IK L++++Q N+F LP EDP H+ F RL K N
Sbjct: 15 PRNHHQRAGIVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKIN 74
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ E+ +L LFPF L D+A W +LP SI WD ++AFLA+
Sbjct: 75 GVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAK 119
>At4g07640 putative athila transposon protein
Length = 866
Score = 90.9 bits (224), Expect = 2e-19
Identities = 44/105 (41%), Positives = 63/105 (59%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + I P I NNF+IK L++++Q N+F+ LP EDP H+ F RL K N
Sbjct: 20 PRDHRQREGIAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + +L LFPF L D+A W +LP+ SI WD ++AFL++
Sbjct: 80 GVSADGFKLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSK 124
>At4g07780 putative athila transposon protein
Length = 446
Score = 90.5 bits (223), Expect = 2e-19
Identities = 45/105 (42%), Positives = 63/105 (59%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P + NNF+I L++++Q N+F LP EDP ++ +F RL G K N
Sbjct: 28 PRNHHQRQGIVPPPVQINNFEIMSGLISMIQGNKFHGLPKEDPLDNLDSFDRLCGLTKIN 87
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GVT + +L LFPF L D+A W +LP SIT WD ++ FLA+
Sbjct: 88 GVTKDMFKLRLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAK 132
>At2g10670 pseudogene
Length = 929
Score = 89.0 bits (219), Expect = 6e-19
Identities = 46/105 (43%), Positives = 59/105 (55%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV + NNF IK L+ +VQ N+F LP EDP H+ RL G K N
Sbjct: 52 PHNHNQRHGIVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKIN 111
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + +L LFPF L D+A W +LP SIT WD + AFLA+
Sbjct: 112 GVSEDGFKLRLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAK 156
>At4g08050
Length = 1428
Score = 88.6 bits (218), Expect = 8e-19
Identities = 44/105 (41%), Positives = 62/105 (58%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + I P I NNF+IK L++++Q N+F LP EDP H+ F RL K N
Sbjct: 20 PRDHRQRKGIAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + +L LFPF L D+A W +L + SIT WD ++AFL++
Sbjct: 80 GVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSK 124
>At2g06310 putative Athila retroelement ORF1 protein
Length = 733
Score = 87.4 bits (215), Expect = 2e-18
Identities = 43/96 (44%), Positives = 58/96 (59%)
Query: 22 IVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRL 81
I P I NNF+IK L++++Q N+F LP EDP H+ F RL K NGV + L
Sbjct: 29 IAPPVIQNNNFEIKSGLISMIQGNKFHGLPMEDPLNHLDEFDRLCNLTKINGVIEDGFNL 88
Query: 82 HLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
LFPF L +A W +LP+ SIT WD ++AFL++
Sbjct: 89 RLFPFSLGGKAHIWEKNLPHDSITTWDDCKKAFLSK 124
>At4g03790 putative athila-like protein
Length = 1064
Score = 86.3 bits (212), Expect = 4e-18
Identities = 46/108 (42%), Positives = 60/108 (54%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + I P I NNF+IK L++I+Q N+F LP EDP H+ F RL K N
Sbjct: 20 PRDHRQRKGIAPPAIQNNNFEIKSGLISIIQGNKFHGLPMEDPLDHLDEFDRLCNLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLARSSP 120
GV+ + +L LFPF L D+A W +L + SIT W R+ F SSP
Sbjct: 80 GVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWMIARRLFYQSSSP 127
>At2g06160 putative Athila retroelement ORF1 protein
Length = 750
Score = 85.9 bits (211), Expect = 5e-18
Identities = 43/105 (40%), Positives = 58/105 (54%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P + NNF+IK L+ +VQ N+F LP ED H+ F RL K N
Sbjct: 20 PHNHNQRHGIVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + + LFPF L D+ W +LP SIT WD ++AF A+
Sbjct: 80 GVSEDGFKFRLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAK 124
>At3g32000 unknown protein
Length = 839
Score = 85.1 bits (209), Expect = 9e-18
Identities = 44/105 (41%), Positives = 61/105 (57%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + I P I NNF+IK L++++Q N+F LP EDP H+ F RL K N
Sbjct: 20 PRHHRQRKEIAPPAIQKNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKIN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ +L LFPF L D+A W +LP+ SIT D ++AFL++
Sbjct: 80 GVSENGFKLRLFPFSLGDKALIWEMNLPHDSITTRDDCKKAFLSK 124
>At3g30630 hypothetical protein
Length = 785
Score = 84.0 bits (206), Expect = 2e-17
Identities = 43/105 (40%), Positives = 60/105 (56%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + I PTI NNF IK L++++Q N+F LP ED H+ F RL K N
Sbjct: 20 PRDHRQRKGIAPPTIQNNNFKIKSGLISMIQGNKFHGLPMEDLLDHLDEFDRLCNLTKVN 79
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
GV+ + +L LFPF L D+A W ++P+ SI W ++AFLA+
Sbjct: 80 GVSEDGFKLRLFPFFLGDKAHIWEKNMPHDSIITWVDCKKAFLAK 124
>At2g10740 pseudogene
Length = 169
Score = 83.2 bits (204), Expect = 3e-17
Identities = 40/96 (41%), Positives = 57/96 (58%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P + IV P + NNF+IK L++++Q N+F LP +DP H+ +F RL G N
Sbjct: 72 PRNHHQRQGIVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNIN 131
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWD 108
GVT + + LFPF + D+A W +LP+ SIT WD
Sbjct: 132 GVTEDMFKQRLFPFSVGDKAHHWEKTLPSDSITSWD 167
>At2g13250 putative Athila retroelement ORF1 protein
Length = 507
Score = 75.5 bits (184), Expect = 7e-15
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 13 PSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSN 72
P+ + I P ++ NNF+IK +L+N+VQ ++F L EDP H+ F L T+K N
Sbjct: 111 PNIRGNRNGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLDQFDMLCSTVKIN 170
Query: 73 GVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLARSSPKQ 122
G++ + +L LFPF L DRA W +LP ++ SSP+Q
Sbjct: 171 GISEDAFKLRLFPFSLGDRARIWEKNLPQAPSPLGTNAKEHSSQSSSPQQ 220
>At1g38440 hypothetical protein
Length = 263
Score = 75.1 bits (183), Expect = 9e-15
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 41 IVQQNQFFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLP 100
++Q+N+F LP EDP H+ F RL K NGV+ + +L LFPF L D+A W +LP
Sbjct: 1 MIQENKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60
Query: 101 NGSITPWDQLRQAFLAR 117
+ SIT WD ++AFL++
Sbjct: 61 HDSITTWDDCKKAFLSK 77
>At3g42260 putative protein
Length = 355
Score = 74.7 bits (182), Expect = 1e-14
Identities = 37/83 (44%), Positives = 50/83 (59%)
Query: 35 KPALLNIVQQNQFFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASA 94
K L++ +Q N+F LP EDP H+ +F RL G K NGVT + +L LFPF L D+A
Sbjct: 222 KGGLISTIQGNKFHGLPMEDPLDHLDSFDRLCGFTKINGVTEDMFKLRLFPFSLGDKAHH 281
Query: 95 WFHSLPNGSITPWDQLRQAFLAR 117
W +LP SI W ++ FLA+
Sbjct: 282 WEKTLPPKSINSWGDCKKTFLAK 304
>At3g32890 Athila ORF 1, putative
Length = 755
Score = 73.6 bits (179), Expect = 3e-14
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 41 IVQQNQFFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLP 100
++Q N+F LP EDP H+ F RL K NGV+ + +L LFPF L D+A W +LP
Sbjct: 1 MIQGNKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60
Query: 101 NGSITPWDQLRQAFLAR 117
+ SIT WD ++AFL++
Sbjct: 61 HDSITTWDDCKKAFLSK 77
>At3g31340 Athila ORF 1, putative
Length = 781
Score = 65.9 bits (159), Expect = 6e-12
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 6 TLKEYATPSTEEPQTVIVYPTIDANNFDIKPALLNIVQQNQFFELPTEDPNLHISTFLRL 65
TL+++ P+ + + + I+ N+F+IK LL +V+QNQFF +E+ H+ F +
Sbjct: 61 TLRDHDAPNIDFFRDRNQHLPINRNDFEIKTGLLALVKQNQFFVHSSENHVYHLDNFEDI 120
Query: 66 SGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAFLAR 117
+ NGV + I+ LF F L D A W SL ++ W+ + AFL +
Sbjct: 121 CRITRMNGVPDDIIKCRLFIFSLADNAHRWLKSLDPINLRSWEDYKAAFLGQ 172
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,046,848
Number of Sequences: 26719
Number of extensions: 120293
Number of successful extensions: 313
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 53
length of query: 130
length of database: 11,318,596
effective HSP length: 88
effective length of query: 42
effective length of database: 8,967,324
effective search space: 376627608
effective search space used: 376627608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148395.5