BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148359.7 + phase: 0
(789 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 416 e-116
At2g15410 putative retroelement pol polyprotein 314 1e-85
At3g31530 hypothetical protein 313 2e-85
At2g15100 putative retroelement pol polyprotein 303 2e-82
At1g37200 hypothetical protein 239 6e-63
At2g14400 putative retroelement pol polyprotein 218 1e-56
At2g06320 putative retroelement pol polyprotein 204 2e-52
At1g37060 Athila retroelment ORF 1, putative 200 3e-51
At2g13060 pseudogene 188 9e-48
At2g13230 pseudogene 186 4e-47
At1g36830 hypothetical protein 173 4e-43
At2g11940 putative retroelement gag/pol polyprotein 169 7e-42
At2g13330 F14O4.9 154 1e-37
At2g12040 T10J7.2 120 3e-27
At2g07410 putative retroelement pol polyprotein 109 5e-24
At2g07660 putative retroelement pol polyprotein 102 6e-22
At4g04060 putative transposon protein 100 4e-21
At4g07610 99 1e-20
At2g11680 putative retroelement pol polyprotein 98 2e-20
At2g10780 pseudogene 98 2e-20
>At1g20390 hypothetical protein
Length = 1791
Score = 416 bits (1068), Expect = e-116
Identities = 268/793 (33%), Positives = 401/793 (49%), Gaps = 49/793 (6%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L + W+ + +EAF+ +K+YL PPILV P G L LY++V D +V VL + D
Sbjct: 1036 LKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRG 1095
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF 126
++ I+Y SK + ETRY ++EK A+ +A++LR Y +HT +++ P++
Sbjct: 1096 --EQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVAL 1152
Query: 127 EKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 186
+G++ + + LSEYDI F+ + A+K +LAD L PL + EE
Sbjct: 1153 HSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE--- 1209
Query: 187 LKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTN 246
W L DG+ +A G GIG +VSP + + R+ F TN
Sbjct: 1210 --------------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATN 1249
Query: 247 NMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTY 306
N+AEYE I G+ A M+I + + DS L+ Q+ GE+E + + Y + +
Sbjct: 1250 NVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKD 1309
Query: 307 FTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP-IIKVQRLERPS-----HVFAIGD 360
F +L IPR +N ADALA L+ + +D+ II V+ +++PS V +
Sbjct: 1310 FENFKLSKIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNT 1365
Query: 361 VIDQAGENVVGYKPWYYDIKQFLLSREYPPGASKQDKKTLRRL---AGRFLLDGDILYKR 417
+ + W +I+ +L P DK T RRL A ++ L + L K
Sbjct: 1366 IRSSNAPDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKV 1420
Query: 418 NYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARK 477
+ +L C+ E ++M + H+G G H+ G ++ KL + G+YW M DC + K
Sbjct: 1421 SAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAK 1480
Query: 478 CHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWV 537
C +CQ +A IH P L +P+PF W +D++G + AS RFILV DYFTKWV
Sbjct: 1481 CEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWV 1538
Query: 538 EAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSP 597
EA SY + V F+ IICR+G+P +IITDNG+ + + C +KI + S+P
Sbjct: 1539 EAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTP 1598
Query: 598 YRPQMNGAVEAANKNIKRIVQKMVTTYKN-WHEMLPYALHGYRTTVRSSTGATPFSLVYG 656
PQ NG EA NK I ++K + K W + L L YRTT RS+T TPF+ YG
Sbjct: 1599 RYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYG 1658
Query: 657 MEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAF 716
MEA+ P EV SLR M K E + D+L+ +EE R A+ R +YQ +
Sbjct: 1659 MEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHY 1717
Query: 717 DKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVEL 775
++KV+ R F VG+LVL++ + GK N+EG Y V K G L M G +
Sbjct: 1718 NQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAV 1777
Query: 776 PNPVNADIVKKYF 788
P N+ +K+Y+
Sbjct: 1778 PRTWNSMHLKRYY 1790
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 314 bits (805), Expect = 1e-85
Identities = 204/608 (33%), Positives = 296/608 (48%), Gaps = 72/608 (11%)
Query: 242 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYAR 301
F +NN AEYEA I G+ A + +K + Y DS LV +Q G +E + + Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 302 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKVQ-RLERPS 353
L F EL IPR +N ADALA L+S + DVP IK+Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 354 HVFAIGDVIDQ--------------------AGENVVGYKP------------------- 374
I +Q +G V P
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369
Query: 375 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLR 425
W +I+ ++ R P +DK RRL R + L + L + + VLL
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424
Query: 426 CVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYA 485
C+D+ EA+Q+M ++H+G G H+ G ++ K+ + G YW M DC ++ +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484
Query: 486 DKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 545
IH+P L P+PF W +D+I AS ++ILV DYFTKW EA SY +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARI 1542
Query: 546 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 605
+ V F+ NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602
Query: 606 VEAANKNIKRIVQKMVTTYKN-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 664
EA NK I ++K + K W + L L YRTT R ST TPFSL YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662
Query: 665 VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVN 721
+P++R +I + L++ Q D L+ +EE+R A+ R +YQ ++KKV
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718
Query: 722 PREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 780
R F G+LVL++ + GK ++EGPY++ K G L MDG +P N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778
Query: 781 ADIVKKYF 788
+ +K+Y+
Sbjct: 1779 SANLKRYY 1786
Score = 68.2 bits (165), Expect = 2e-11
Identities = 39/116 (33%), Positives = 65/116 (55%), Gaps = 3/116 (2%)
Query: 41 EGRPLILYLSVFDESVGCVLGQRDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWA 100
EG L LY++V +V VL + D ++H I+Y+SK E RY LEK A+ +
Sbjct: 1055 EGETLYLYIAVSTSAVSGVLVREDRG--EQHPIFYVSKTLDGAELRYPTLEKLAFAVVIS 1112
Query: 101 AKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARGQMLLSEYDIVFKTQKAIK 156
A++LR Y ++T +++ P++ I +G++A+ + LSEYDI +K + K
Sbjct: 1113 ARKLRPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
>At3g31530 hypothetical protein
Length = 831
Score = 313 bits (803), Expect = 2e-85
Identities = 211/696 (30%), Positives = 332/696 (47%), Gaps = 109/696 (15%)
Query: 5 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRD 64
D L +N+ W C+EAF +K YL PPIL PV G P LY++V D +V L + D
Sbjct: 241 DVLRRNKKFEWTTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVRED 300
Query: 65 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKY 124
+K I+Y+S+ FT E+RY +EK A+ +A++LR Y +H+ ++ M P++
Sbjct: 301 RGEQK--LIFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRV 357
Query: 125 IFEKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEI 184
I +G++A+ + LSEYDI ++ + K +LAD + P + +
Sbjct: 358 ILHSPSQSGRLAKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR----------- 406
Query: 185 MYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFEC 244
E PL ++ W L DG+ + G G+G + SP G E
Sbjct: 407 --------ENPL-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EA 440
Query: 245 TNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLL 304
TNN+AEYEA + G+ A ++I + DS L+ NQ GE+ T + Y + + L
Sbjct: 441 TNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLA 500
Query: 305 TYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR----LERPSHVFAIGD 360
F + EL IPR EN ADALA L+S + +P+ +++ L + HV I
Sbjct: 501 KNFDEFELTRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQI 560
Query: 361 VIDQAGENVVGYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYD 420
DQ + W I ++ + P + K + L+ A RF+L LYK
Sbjct: 561 SADQDDPDDCN-SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLS 617
Query: 421 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHK 480
L+ CV+ ++M ++H G+
Sbjct: 618 GPLMTCVEAEAICKIMKEIHSGS------------------------------------- 640
Query: 481 CQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 540
+A IH P L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA
Sbjct: 641 ---HAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAE 695
Query: 541 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 600
SY ++ V F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P P
Sbjct: 696 SYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYP 755
Query: 601 QMNGAVEAANKNIKRIVQKMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 660
Q NG EAAN+ L L +RTT R +T TPF+ +YG E V
Sbjct: 756 QGNGQAEAANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECV 796
Query: 661 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 696
+P E+ +PSLR + + ++ + Q+ D+L+LI+E
Sbjct: 797 IPAEMIVPSLRRSLSPE-NDPDNTQTPLDELDLIDE 831
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 303 bits (776), Expect = 2e-82
Identities = 222/784 (28%), Positives = 376/784 (47%), Gaps = 94/784 (11%)
Query: 14 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDETGKKEHAI 73
+WN+ C+EAF +K YL EP +L G L LY++V + +V V + + + K+ I
Sbjct: 630 IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687
Query: 74 YYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTG 133
+Y+ +TRY M+EK A+ AA++LR Y +H +++ + P++ I +G
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739
Query: 134 KIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCE 193
++ + + LSE+D+ F+ + ++ ++ ++ F +++S++
Sbjct: 740 RLGKWAIELSEFDLEFRARTSLNSTMDTSR------------QWGFIK---TWVRSRN-- 782
Query: 194 EPLINEGPDPNSKWG--LVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEY 251
+++ P N G D + AY + V G F + N+ A
Sbjct: 783 ---LSDAPTANRYSGEYEAKDACMEAYLNLVREV----SGRFEQFELTRIPRAENSAANA 835
Query: 252 EACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVE 311
A + E R+ ++ ++ +++I + + R RRL +
Sbjct: 836 LAALASTFEVTLPRVIPVETISQPSIRLDEI---------SFVTTRAMRRRLDAQSAENG 886
Query: 312 LHHIPRDENQMADAL----ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGE 367
LH + DE +++DA+ + NH +P ++P H +
Sbjct: 887 LHQLGDDE-EISDAVHPTEIVENQSLPDNHNAPLP-------DQPPHDWG---------- 928
Query: 368 NVVGYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCV 427
W I+ ++L+ P A K + L+ RF + DILY+R + C+
Sbjct: 929 -----ADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDILYRRIFSAPDAVCI 981
Query: 428 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADK 487
+ +M +VHDGT G H G +++ K+ + GYYW + DC YARKC +CQ +A
Sbjct: 982 FGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPL 1041
Query: 488 IHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTK 547
I P L +S+P+PF W +D++G + T+ VEAA+Y+N+T
Sbjct: 1042 ILQPAELLTTVSAPYPFMKWLMDIVGPLHVS---------------TRGVEAAAYSNITH 1086
Query: 548 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 607
V FI +IICR+G+P +I+TDNG+ + + CEE++I +S+P PQ NG E
Sbjct: 1087 VQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAE 1146
Query: 608 AANKNIKRIVQKMVTTYKN-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 666
A NK I ++K + YK W L L RTT R +T TPFSL+YGMEAV+P E++
Sbjct: 1147 AMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIK 1206
Query: 667 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFK 726
+PS R I + +E E + D ++ I+E+R A+AR +Y ++ V R F+
Sbjct: 1207 VPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFE 1265
Query: 727 VGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 784
VG LVL RR+ Q + GK ++EGPY + G L +M+G + N+ +
Sbjct: 1266 VGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHL 1324
Query: 785 KKYF 788
K+++
Sbjct: 1325 KRFY 1328
>At1g37200 hypothetical protein
Length = 1564
Score = 239 bits (609), Expect = 6e-63
Identities = 168/557 (30%), Positives = 259/557 (46%), Gaps = 95/557 (17%)
Query: 64 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIK 123
D G+K IYY+SK D ET Y +EK A+ +A++LR YL +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 124 YIFEKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEE 183
I + ++A+ + LSEYDI ++T+ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 184 IMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFE 243
+G + N KW L DG+ N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 244 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRL 303
+NN +EYEA I GI+ A MRI+ + + DS LV +Q GE+E + Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 304 LTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPSHVFAI--- 358
F EL IPR EN DALA L+S V II V+ +E PS +
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHA 1192
Query: 359 ------------------------------GDVIDQA----GENVVGYKP-----WYYDI 379
G ++A E + Y+P W I
Sbjct: 1193 GMETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPI 1252
Query: 380 KQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDV 439
++ PP K + + L+ + R+ + L KR+ + C + + LM +
Sbjct: 1253 IDYIERGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSM 1310
Query: 440 HDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMS 499
H+G G+H +G T+ +L DC ++ +C KCQ +A +H PP ++ +S
Sbjct: 1311 HEGQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSIS 1360
Query: 500 SPWPFSMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 556
SP+PF W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+
Sbjct: 1361 SPYPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLE 1418
Query: 557 NIICRYGVPSKIITDNG 573
NI+ R+G+P +I+TDNG
Sbjct: 1419 NIVYRHGIPYEIVTDNG 1435
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/98 (33%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 692 NLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNY 750
+ I+E+R AM + +YQ ++ + R F+VGELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 751 EGPYVVKKAFSGGALILTHM-DGVELPNPVNADIVKKY 787
EGPY + + G L + +GV P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 218 bits (554), Expect = 1e-56
Identities = 161/538 (29%), Positives = 251/538 (45%), Gaps = 80/538 (14%)
Query: 277 LVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 334
+++NQ G++E + + Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 335 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQA---GENVVGYKPWYYDIKQFLLSREYPPG 391
VN V I + ++ F + A G+ V P +K+ P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905
Query: 392 ASKQDKKTLRRLAGRFL-----------LDGDIL--------------YKRNYDMVLLRC 426
+ Q+ + + +D DIL Y+R L
Sbjct: 906 PAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLS 965
Query: 427 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYAD 486
+ E +M +VH+G G+H++G M+ K+ + YYW M DC +YA++C +CQ++A
Sbjct: 966 IFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAP 1025
Query: 487 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 546
IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1026 LIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA----- 1079
Query: 547 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 606
I+ +G+ K+ + S+ PQ NG
Sbjct: 1080 -----------ILLNWGI------------------------KVSY--STLRYPQGNGQA 1102
Query: 607 EAANKNIKRIVQKMVTTYKN-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 665
EAANK I ++K + K W++ L L YRTT R STG TPFSLVYGM+AV+P E+
Sbjct: 1103 EAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAEL 1162
Query: 666 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREF 725
+P LR EA L+E E D L+ I E+R A+ + +YQ ++ KV R F
Sbjct: 1163 NVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPF 1221
Query: 726 KVGELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 782
VG+ VLKR +++ + GK N+EGPY+V + G L ++ + P N +
Sbjct: 1222 FVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
Score = 55.8 bits (133), Expect = 9e-08
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L N+ +W+++C+EAF +K YL PP+L P L LY+SV + +V VL R++
Sbjct: 723 LKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVL-IREDR 781
Query: 67 GKKEHAIYYLSKKFT-DCETRYTMLEKTCCALAWAAKRLRHY 107
G+++ Y + +F D E + + +E + AK R +
Sbjct: 782 GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 204 bits (519), Expect = 2e-52
Identities = 144/440 (32%), Positives = 218/440 (48%), Gaps = 16/440 (3%)
Query: 355 VFAIGDVIDQAGENVVGYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDIL 414
+F+IG Q V G PWY D +L PP + ++K R + D L
Sbjct: 20 LFSIGKEFHQLNA-VEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYL 78
Query: 415 YKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQ 473
Y D + V E E E ++ HD +G H AT T+S K+L+AG++W M D +
Sbjct: 79 YTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQE 137
Query: 474 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 533
+ KC CQ + N + F +WGID +G +S G+++ILV +DY
Sbjct: 138 FVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYV 195
Query: 534 TKWVEA-ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 592
+KWVEA AS TN K VV K K I R+GV +I+D G + N V + L ++ ++H
Sbjct: 196 SKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKH 254
Query: 593 HNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKNWHEMLPYALHGYRTTVRSSTGATPF 651
++PY PQ +G VE +N+ IK I++K V T K+W L AL Y+T ++ G TPF
Sbjct: 255 KVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPF 314
Query: 652 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQAR 711
+L+ L +E+E ++ + + R QL+ ++E R++A Y+ R
Sbjct: 315 NLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKER 374
Query: 712 MKTAFDKKVNPREFKVGELVL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 769
K DKK+ ++F+VG+ VL R+ P GK + GP+ + + GA+ L
Sbjct: 375 TKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLAG 431
Query: 770 MDGVELPNPVNADIVKKYFA 789
GV VN +KKY A
Sbjct: 432 KSGV---FTVNGQRLKKYLA 448
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 200 bits (508), Expect = 3e-51
Identities = 142/419 (33%), Positives = 207/419 (48%), Gaps = 43/419 (10%)
Query: 374 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 433
PWY D +L+S E PP S +KK + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 434 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 492
++ H +G H AT TMS K+L+AG++W +M D ++ KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 493 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 551
F +WGID +G +S G+++ILVAIDY +KWVEA AS+TN +VV
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489
Query: 552 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 611
K K I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541
Query: 612 NIKRIVQKMV-TTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 670
IK I++K V +T K+W L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601
Query: 671 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGEL 730
+ + R QLN + + R++A Y+ R K+ DKK+ R+FKVG+
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 731 VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 787
VL R+ P GK + GP+ V GA+ L +G VN +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
Score = 58.9 bits (141), Expect = 1e-08
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L K ++DEC AF IK L+ PI+ P P +
Sbjct: 1176 LCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEIIT----------------- 1218
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF 126
D + RY EK A+ +A ++ R YLV + + +++I+
Sbjct: 1219 -------------MDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIY 1265
Query: 127 EKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 186
K ++ R +LL E+D+ +K I+ + ADHL+ ++D I+ P+E++M
Sbjct: 1266 AKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMA 1324
Query: 187 LK 188
++
Sbjct: 1325 IQ 1326
>At2g13060 pseudogene
Length = 930
Score = 188 bits (478), Expect = 9e-48
Identities = 116/365 (31%), Positives = 182/365 (49%), Gaps = 17/365 (4%)
Query: 374 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 433
PWY DI +L + P + +KK R R+ D LYK +YD + RC+ E
Sbjct: 137 PWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAATEVP 196
Query: 434 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQI---YADKIH 489
++ H ++G H AT T+S K+L+A ++W M D ++ +C CQ + +
Sbjct: 197 SILSHCHSSSYGGHFATFKTVS-KVLQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNE 255
Query: 490 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 549
+PP N F WGID +G P SN + +ILV +DY +KWVEA + V
Sbjct: 256 MPP---NFRLEVEVFDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIASLKNDSAV 310
Query: 550 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 609
V K K+ I R+GVP +I+D + N +++ L ++ ++H ++PY PQ +G VE +
Sbjct: 311 VMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVS 370
Query: 610 NKNIKRIVQKMV-TTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 668
N+ IK I++K V K W L AL Y+T ++ G TPF L+YG LP+E+E
Sbjct: 371 NRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHK 430
Query: 669 SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVG 728
+ + +S D++ R+ A Y+ R K DKK+ R F+
Sbjct: 431 AAWAVKMMNFDIKSAGESELDEI------RIHAYDNSKLYKERTKAYHDKKILTRTFEPN 484
Query: 729 ELVLK 733
+ +L+
Sbjct: 485 DQILR 489
Score = 33.9 bits (76), Expect = 0.36
Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 2/48 (4%)
Query: 140 MLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 187
+LL E+DI + +K ++ + ADHL+ +DD PI DF EE +Y+
Sbjct: 15 LLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPIN-DFLPEENIYM 60
>At2g13230 pseudogene
Length = 353
Score = 186 bits (472), Expect = 4e-47
Identities = 121/366 (33%), Positives = 194/366 (52%), Gaps = 25/366 (6%)
Query: 291 ANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR-- 348
A L +D+A++ F + +L IPR EN ADALA L+S +N +P+ +++
Sbjct: 3 AYLALVQDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPS 58
Query: 349 --LERPSHVFAIGDVI--DQAGENVVGY---KPWYYDIKQFLLSREYPPGASKQDKKTLR 401
L++ H F I V + A +N W I+ F+ R+ K + + L+
Sbjct: 59 IELDKVEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVR--LDKWEARKLK 116
Query: 402 RLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 461
A RF+L + L+K L+ CV++ A ++M +VH G+ G ++ G ++ K+ R G
Sbjct: 117 AEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLG 176
Query: 462 YYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASN 521
Y+W M DC KCQ A IH+P L+ ++SP+P W +D+IG + AS
Sbjct: 177 YFWPTMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--ASK 227
Query: 522 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVV 581
+ +LV DYF+K EA SY ++ + V F+ +I+CR+GVP +I+TDNG+ +
Sbjct: 228 QKKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRF 287
Query: 582 QALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-NWHEMLPYALHGYRT 640
Q C+++ I S+P Q NG +AANK I ++K +T K +W + L L +RT
Sbjct: 288 QGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRT 347
Query: 641 TVRSST 646
T R +T
Sbjct: 348 TPRRAT 353
>At1g36830 hypothetical protein
Length = 243
Score = 173 bits (438), Expect = 4e-43
Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 7/233 (3%)
Query: 509 IDMIGRIEPKASNGHRFI---LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVP 565
+D++G +E AS G + + LV DY TKW+EA ++ VT++ V F+ NI+C++G+P
Sbjct: 1 MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58
Query: 566 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK 625
+IITDNGTNL + ++A C+++KI S+P+ PQ NG EAANK I ++K++ + K
Sbjct: 59 YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118
Query: 626 N-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWC 684
+ W ++L L YRTT R ST TPFSL YG+EAV+P+ IPS+R S+
Sbjct: 119 SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177
Query: 685 QSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVLKRRIS 737
Q D ++ I+E+R AM R +YQ + ++ + R F+VGELVL++ S
Sbjct: 178 QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 169 bits (427), Expect = 7e-42
Identities = 145/550 (26%), Positives = 233/550 (42%), Gaps = 115/550 (20%)
Query: 276 ALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM--- 332
A + G++E + Y D R L F K EL +PR EN ADALA L+S
Sbjct: 740 ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799
Query: 333 ---------------FRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQ----------AGE 367
R+ N V ++LE ++ + + D+ A E
Sbjct: 800 TVRRIISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLVADE 859
Query: 368 NVVGYK-------PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYD 420
+ Y W I+ ++ + P K + + L+ RF L DILY+R
Sbjct: 860 DSTEYNLPHDWGADWREPIRNYIFNGVLP--TDKWEARKLKATCARFCLADDILYRRIIS 917
Query: 421 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHK 480
C+ + ++ ++HDGT G H+ G +++ KL + GY+W M DC YA + +
Sbjct: 918 APDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSRR 977
Query: 481 CQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 540
+ SP PF W +D++G + ++ G RF+L+ +WVEAA
Sbjct: 978 -------------TFHFGISPLPFMKWSMDIVGPLH-VSTRGVRFLLL------EWVEAA 1017
Query: 541 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 600
+Y+ +T+ V FI IICR+G+P +I+TDNG + +A E++I + S+P P
Sbjct: 1018 AYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPRYP 1077
Query: 601 QMNGAVEAANKNIKRIVQKMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 660
Q G VEA V
Sbjct: 1078 Q--GNVEA---------------------------------------------------V 1084
Query: 661 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKV 720
+P E+++P R I K +EA + D ++ I+E+R A+ R +Y ++ V
Sbjct: 1085 IPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNSNV 1143
Query: 721 NPREFKVGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNP 778
R F VG LVL RRI Q + GK ++EGPY + G ++ +M+G +
Sbjct: 1144 RSRSFDVGTLVL-RRIHQNTAEKGAGKLGISWEGPYKITHIVRNGDCLI-NMEGKTVRRA 1201
Query: 779 VNADIVKKYF 788
NA +K+++
Sbjct: 1202 WNAAHLKRFY 1211
Score = 111 bits (278), Expect = 1e-24
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 3/160 (1%)
Query: 10 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDETGKK 69
N+ VW++ C+EAF +K+YL EP +L P G L LY+SV + ++ VL + + +
Sbjct: 583 NKGFVWDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERS--D 640
Query: 70 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 129
E I+Y+SK F+D ETRY M+EK A+ AA++LR Y +H +++ + P++ I
Sbjct: 641 ERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSP 699
Query: 130 VVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPL 169
+G++A+ + LSE+++ F + ++K +LAD L PL
Sbjct: 700 NQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739
>At2g13330 F14O4.9
Length = 889
Score = 154 bits (390), Expect = 1e-37
Identities = 98/325 (30%), Positives = 148/325 (45%), Gaps = 59/325 (18%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L K + WN +C++AF +K YL EPPIL P +G PL LY
Sbjct: 502 LRKGKEFDWNKDCEQAFKQLKAYLTEPPILAKPEKGEPLYLY------------------ 543
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF 126
T+ + R +EK + + ++LR Y +H ++ PI+ I
Sbjct: 544 --------------TNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTIL 588
Query: 127 EKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 186
+G++A+ + L EYDI ++T+ ++K +LAD + PL D
Sbjct: 589 HSLTQSGRLAKWAIELREYDIEYRTRTSLKAQVLADFVIKLPLADL-------------- 634
Query: 187 LKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTN 246
+G + N KW L DG+ N G G+G + SP G I + ++ F +N
Sbjct: 635 ------------DGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASN 682
Query: 247 NMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTY 306
N +EYEA I GI+ A + I+ + Y DS LV +Q GE+E + Y + + L
Sbjct: 683 NESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQ 742
Query: 307 FTKVELHHIPRDENQMADALATLSS 331
F +L IPR EN AD LA L+S
Sbjct: 743 FESFKLTRIPRGENTSADTLAALAS 767
>At2g12040 T10J7.2
Length = 976
Score = 120 bits (301), Expect = 3e-27
Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 22/243 (9%)
Query: 504 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 563
F WGI+ +G I P SN + +ILV +DY +KWVEA + VV K K I +G
Sbjct: 569 FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626
Query: 564 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTT 623
VP +I+D G + N ++ L ++ ++H ++PY PQ +G VE +N+ IK I++K V
Sbjct: 627 VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684
Query: 624 YKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 683
++ G TPF L+YG LP+E+E + +
Sbjct: 685 -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727
Query: 684 CQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVLKRRISQQP-DP 742
+ R QLN ++E ++ A Y+ R K DKK+ R F+ + K+ +P
Sbjct: 728 GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787
Query: 743 RGK 745
RGK
Sbjct: 788 RGK 790
Score = 98.2 bits (243), Expect = 2e-20
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L K + EC +AF IK L+ PI+ PP P + D +VG VLGQR +
Sbjct: 203 LCKEVKFEFTQECHDAFQQIKQALISAPIVQPPDWDLPFEVMCDASDFAVGAVLGQRKD- 261
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF 126
KK HAIYY S+ D + Y EK A+ +A ++ R YLV + + +KY+
Sbjct: 262 -KKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLM 320
Query: 127 EKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 186
+ ++ R +LL E+DI + +K ++ + ADHL+ +DD PI DF EE +Y
Sbjct: 321 QNKDAKPRLLRWILLLQEFDIEVRDKKGVEKCV-ADHLSRIRIDDDVPIN-DFLPEENIY 378
Query: 187 L 187
+
Sbjct: 379 M 379
>At2g07410 putative retroelement pol polyprotein
Length = 411
Score = 109 bits (273), Expect = 5e-24
Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 9/202 (4%)
Query: 519 ASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 578
+S G+++ILVA+DY +KWVEA +VV K K I R+GV +I+D + N
Sbjct: 6 SSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGRKHFIN 65
Query: 579 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKNWHEMLPYALHG 637
+ L ++ ++H ++ Y PQ +G VE +N+ IK I++K V T K+ L AL
Sbjct: 66 KAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLDDALWA 125
Query: 638 YRTTVRSS----TGATPFSLVYGMEAVLPLEVEIPSLRVI--MEAKLSEAEWCQSRYDQL 691
Y+T +++ G TPF+L+Y LP+E+E ++ + M + AE + R QL
Sbjct: 126 YKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAE--EERLIQL 183
Query: 692 NLIEEKRMDAMARGHSYQARMK 713
N ++E R++A +Y+ + K
Sbjct: 184 NDLDEIRLEAYESSKNYKGKRK 205
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 102 bits (255), Expect = 6e-22
Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 22/340 (6%)
Query: 426 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQI 483
CV A E+++ + H F H + M R L R Y+W+ M D ++ KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 484 YADKIHVPPHAL-NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 542
+ VP L N+ S W + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 543 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 601
++ +++A+ + I+ +G+P I++D T + A + + S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 602 MNGAVEAANKNIKRIVQKMVTTY-KNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 660
+G E + ++ +++ V + NW + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 661 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKV 720
PL + E +L +++ ++ K +A Q R K+ +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 830
Query: 721 NPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVV 756
EF+VG+LV + ++ + R K +P Y GPY V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
Score = 57.0 bits (136), Expect = 4e-08
Identities = 33/101 (32%), Positives = 49/101 (47%), Gaps = 6/101 (5%)
Query: 9 KNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDETGK 68
K+ W+DEC+++F +K L+ P+LV P EG P +Y +GCVL Q
Sbjct: 414 KDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ------ 467
Query: 69 KEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 109
K I Y S++ E Y + A+ +A K R YL+
Sbjct: 468 KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
>At4g04060 putative transposon protein
Length = 375
Score = 100 bits (248), Expect = 4e-21
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 18/148 (12%)
Query: 450 GHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGI 509
G M R ++ GY+W M +C ++ +C KCQ +A +H P ++ +SSP+PF W +
Sbjct: 186 GRLMKRSVV--GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSM 243
Query: 510 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 569
D++G +E AS G + + + VT++ V F+ NI+CR+G+P +II
Sbjct: 244 DVVGPME--ASGGKKKLKNLL--------------VTEKQVEDFLWENIVCRHGIPYEII 287
Query: 570 TDNGTNLNNNVVQALCEEFKIEHHNSSP 597
TDNGTNL + ++A C++ KI S+P
Sbjct: 288 TDNGTNLTSGKIKAFCDKCKIRLTISTP 315
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 264 MRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMA 323
M I+ + + DS LVI+Q GE+E + Y + + L F EL IPR EN A
Sbjct: 1 MGIRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSA 60
Query: 324 DALATLSSMFRVNHWNDVPIIK----VQRLERPS 353
DALA L+ + P +K V+ +E PS
Sbjct: 61 DALAALA-------YTSDPFVKRIIPVEGIEHPS 87
>At4g07610
Length = 276
Score = 98.6 bits (244), Expect = 1e-20
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Query: 425 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIY 484
R V E E E ++ H T+G + T K+L+AG++W M + ++ KC C
Sbjct: 74 RYVSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRK 133
Query: 485 ADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 544
+ N + F +WGID IG +S G+++ILVA+DY +KW+EA +
Sbjct: 134 GNISKRNEMPQNPILEVELFDVWGIDFIGPFP--SSYGNKYILVAVDYVSKWIEATASPT 191
Query: 545 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 592
+VV K K I R+GVP +I+D G + N V + L ++ ++H
Sbjct: 192 NDAKVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 239
>At2g11680 putative retroelement pol polyprotein
Length = 301
Score = 98.2 bits (243), Expect = 2e-20
Identities = 60/196 (30%), Positives = 100/196 (50%), Gaps = 4/196 (2%)
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L K ++ +EC AF S K L+ PI+ P P + D +VG VLGQ+ +
Sbjct: 67 LCKEAEFIFEEECLTAFKSTKEALVSAPIVQAPNRDYPFEIMCDDSDYAVGAVLGQKID- 125
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF 126
+K H IYY S D + RY EK A+ +A ++ R YLV + + +++I+
Sbjct: 126 -RKLHVIYYASGTMDDTQVRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRHIY 184
Query: 127 EKAVVTGKIARGQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 186
K ++ R +LL E+D+ +K I+ + ADHL+ ++D PI+ P+E++M
Sbjct: 185 AKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVPIDDSMPEEQLMA 243
Query: 187 LKSKDCEEPLINEGPD 202
++ + E IN+ D
Sbjct: 244 IQQLN-ESAQINKSLD 258
>At2g10780 pseudogene
Length = 1611
Score = 98.2 bits (243), Expect = 2e-20
Identities = 83/365 (22%), Positives = 157/365 (42%), Gaps = 28/365 (7%)
Query: 426 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQI 483
CV A E+++ + H F H + M R L R Y+W+ M+ D ++ KC CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210
Query: 484 YADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 542
+ VP L + P W + +D + + + H + V +D TK +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 543 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 601
++ +++A+ + I+ +G+P I++D T + +A + + S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 602 MNGAVEAANKNIKRIVQKMVTTY-KNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 660
+ E + ++ +++ V + NW + L Y + ++S G +P+ +YG
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 661 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKV 720
PL + E +L +++ ++ K +A Q R K+ +K+
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 1438
Query: 721 NPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 776
EF+VG+LV + ++ + R K +P Y GPY V + A L +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492
Query: 777 NPVNA 781
+NA
Sbjct: 1493 PKLNA 1497
Score = 62.8 bits (151), Expect = 7e-10
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 9 KNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDETGK 68
K+ W+DEC+++F +K L P+LV P EG P +Y +GCVL Q
Sbjct: 919 KDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ------ 972
Query: 69 KEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEK 128
K I Y S++ E Y + A+ + K R YL + + +KYIF +
Sbjct: 973 KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQ 1032
Query: 129 AVVTGKIARGQMLLSEY--DIVFKTQKA 154
+ + R L+++Y DI + KA
Sbjct: 1033 PELNLRQRRWMELVADYNLDIAYHPGKA 1060
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,699,982
Number of Sequences: 26719
Number of extensions: 830464
Number of successful extensions: 2088
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 205
length of query: 789
length of database: 11,318,596
effective HSP length: 107
effective length of query: 682
effective length of database: 8,459,663
effective search space: 5769490166
effective search space used: 5769490166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148359.7