BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148349.9 - phase: 0 
         (149 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g02080 putative 40S ribosomal protein S19                          253  3e-68
At5g61170 40S ribsomal protein S19 - like                             251  1e-67
At5g15520 40S RIBOSOMAL PROTEIN S19 - like                            246  3e-66
At1g59510 unknown protein                                              27  4.1
At5g45500 unknown protein                                              27  5.3
At1g17590 transcription factor, putative                               27  5.3
At2g27880 Argonaute (AGO1)-like protein                                26  9.0

>At3g02080 putative 40S ribosomal protein S19
          Length = 143

 Score =  253 bits (646), Expect = 3e-68
 Identities = 116/143 (81%), Positives = 133/143 (92%)

Query: 1   MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
           MA+ KTVKDVSP +FV AY++HLKRSGK+ELP WTD+VKT K KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
           MARK+Y+RGGLGVG+F+RIYGGS+RNGSRPPHFCKSSG IARHILQQLE MN++E+DTKG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRKITSSGRRDLDQVAGRILVAP 143
           GR+ITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143


>At5g61170 40S ribsomal protein S19 - like
          Length = 143

 Score =  251 bits (640), Expect = 1e-67
 Identities = 115/142 (80%), Positives = 132/142 (91%)

Query: 1   MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
           MA+ KTVKDVSP EFV AY+AHLKRSGK+ELP WTD+VKT K KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
           MARK+Y+RGGLGVG+F+RIYGGS+RNGSRPPHFCKSSG +ARHILQQL+ MN++++DTKG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRKITSSGRRDLDQVAGRILVA 142
           GRKITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142


>At5g15520 40S RIBOSOMAL PROTEIN S19 - like
          Length = 143

 Score =  246 bits (628), Expect = 3e-66
 Identities = 113/139 (81%), Positives = 131/139 (93%)

Query: 1   MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
           MA+ KTVKDVSP +FV AY++HLKRSGK+ELP WTD+VKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
           MARKIY+RGGLGVG+F+RIYGGS+RNGSRPPHFCKSSG IARHILQQLE M+++E+DTKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRKITSSGRRDLDQVAGRI 139
           GR+ITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139


>At1g59510 unknown protein
          Length = 381

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 29/121 (23%), Positives = 49/121 (39%), Gaps = 17/121 (14%)

Query: 26  SGKLEL-------PEWTDLVKTAKFKELAPYDPDWYYVRAASMARKIYVRGGLGVGSFQR 78
           SG++E+       P W +L+   K +EL     +    R  S A  +Y+   +GV ++ +
Sbjct: 168 SGEIEIGSDDSLKPRWMNLLSDDKCRELLADCIE----RFTSSAVSVYIDKTVGVNTYDQ 223

Query: 79  IYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMD--TKGGRKITSSGRRDLDQVA 136
           I+ G     + P H   +   +       LE       D  T  G K  SS R+  ++  
Sbjct: 224 IFAGL----TNPKHRDSARDVLVSVCNGALETFMRTSHDVFTSSGEKTDSSLRKSENREN 279

Query: 137 G 137
           G
Sbjct: 280 G 280


>At5g45500 unknown protein
          Length = 489

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 19/78 (24%), Positives = 33/78 (41%), Gaps = 4/78 (5%)

Query: 3   SSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYD----PDWYYVRA 58
           S K  ++V P+E +           K + P   +L KT K  +L  +     P+W     
Sbjct: 343 SEKGDENVKPKENIGILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDN 402

Query: 59  ASMARKIYVRGGLGVGSF 76
                K+Y++GG+ +  F
Sbjct: 403 LLNVEKLYIKGGIKLTGF 420


>At1g17590 transcription factor, putative
          Length = 328

 Score = 26.6 bits (57), Expect = 5.3
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 15  FVNAYSAHL---KRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKIYVRGGL 71
           FVNA   H    +R  + +L     L+K  K     PY  +  +V A    R     GG 
Sbjct: 175 FVNAKQFHAIMRRRQQRAKLEAQNKLIKARK-----PYLHESRHVHALKRPRG---SGGR 226

Query: 72  GVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKGGRKITSS 127
            + + +++   +      P     ++G ++R +L QL+N N  +  T     ITS+
Sbjct: 227 FLNT-KKLQESTDPKQDMPIQQQHATGNMSRFVLYQLQNSNDCDCSTTSRSDITSA 281


>At2g27880 Argonaute (AGO1)-like protein
          Length = 997

 Score = 25.8 bits (55), Expect = 9.0
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 68  RGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKGGRKITSS 127
           RGG G G   R  GG +R+  R     +SSG +A   LQQ        +    GR     
Sbjct: 4   RGGGGHGGASRGRGGGRRSDQRQD---QSSGQVAWPGLQQSYGGRGGSVSAGRGRGNVGR 60

Query: 128 GRRDLDQVAGRILVA 142
           G    D  A ++ VA
Sbjct: 61  GENTGDLTATQVPVA 75


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,184,997
Number of Sequences: 26719
Number of extensions: 125391
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 11,318,596
effective HSP length: 90
effective length of query: 59
effective length of database: 8,913,886
effective search space: 525919274
effective search space used: 525919274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)