BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148292.5 + phase: 0 /pseudo
         (1454 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g25040 putative membrane protein                                    33  1.6
At2g12410 pseudogene                                                   31  4.6

>At5g25040 putative membrane protein
          Length = 492

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 26/155 (16%)

Query: 834 LRVLIGNISLPFHPFLSFLLFLISLILHQLLNMF-LILSLQLLLHPLMTLLVLHPLDVLP 892
           L VL+ N+ L  HPF    LFL + +L  L  MF LIL L+L L              LP
Sbjct: 311 LGVLLYNLRLKDHPFRK--LFLWTQLLFALSGMFDLILVLRLNLK-----------FGLP 357

Query: 893 EIKSLLLI*RIIFVLINHLHLSITCTL-FLIMFLIITSLIPTLISFCLFMLIMNPKPTLR 951
           +          +F++++ +   +   L ++++F++ T L P  I    F L+M+      
Sbjct: 358 DY---------LFIVVDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGL 408

Query: 952 QTSLNVGGKLCKLSSLLLKILELGR*LIHLLMLNL 986
            TS  +GGK+  L  L +   E G   + +L+ N+
Sbjct: 409 MTSSWLGGKM--LHVLKVTRTEFGNLWLAVLVRNV 441


>At2g12410 pseudogene
          Length = 302

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 1193 MVWICCLIQVF*IQNL*PPLQILQSSYIMMIHLYTQIFLLTEDLLGDYCI*MQ------- 1245
            + +I  L+ +F +Q L   L IL    + +  +    FLL  +++GD C+ M        
Sbjct: 28   LAFIGFLLSIFGLQCLVYTLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWVQNPT 87

Query: 1246 ----LDQTLPSLLNN*ANSYLSQLKHTTMQL*ECLD 1277
                LD  LP + N  A   L++ K  T QL   LD
Sbjct: 88   AHTALDDILPCVDNATARETLTRTKLVTYQLVNLLD 123


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.352    0.158    0.526 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,732,248
Number of Sequences: 26719
Number of extensions: 1059011
Number of successful extensions: 3745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3738
Number of HSP's gapped (non-prelim): 6
length of query: 1454
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1342
effective length of database: 8,326,068
effective search space: 11173583256
effective search space used: 11173583256
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 67 (30.4 bits)