BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.4 + phase: 0 /pseudo
(659 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 713 0.0
At2g04670 putative retroelement pol polyprotein 657 0.0
At4g16910 retrotransposon like protein 605 e-173
At3g31970 hypothetical protein 587 e-168
At4g07830 putative reverse transcriptase 483 e-136
At1g36120 putative reverse transcriptase gb|AAD22339.1 441 e-124
At3g11970 hypothetical protein 431 e-121
At1g36590 hypothetical protein 426 e-119
At2g07660 putative retroelement pol polyprotein 420 e-117
At4g10580 putative reverse-transcriptase -like protein 411 e-115
At1g35370 hypothetical protein 398 e-111
At2g14650 putative retroelement pol polyprotein 347 1e-95
At2g06470 putative retroelement pol polyprotein 319 3e-87
At4g03840 putative transposon protein 314 9e-86
At4g03650 putative reverse transcriptase 282 4e-76
At3g29480 hypothetical protein 279 3e-75
At2g06890 putative retroelement integrase 258 6e-69
At3g29490 hypothetical protein 253 2e-67
At4g07850 putative polyprotein 210 2e-54
At2g10690 putative retroelement pol polyprotein 163 2e-40
>At2g10780 pseudogene
Length = 1611
Score = 713 bits (1840), Expect = 0.0
Identities = 358/667 (53%), Positives = 474/667 (70%), Gaps = 20/667 (2%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
L+AKLSKC FW V FLGH+I ++VDP K+ ++ +W ++ TEIRSFLGLAGYYR
Sbjct: 841 LFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYR 900
Query: 62 RFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCD 121
RF+ F+ +A P T+LT K +F W +CE+SF ELK LT APVL+LP+ EP+ VY D
Sbjct: 901 RFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTD 960
Query: 122 ASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVF 181
AS +GLG VLMQ G V+AYASRQLR HEKNYPTHDLE+AAVVF LKIWR YLYG++ +++
Sbjct: 961 ASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIY 1020
Query: 182 RFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMS 241
+DHKSLKY+F Q ELN+RQRRW+EL+ DY+ + YHPG AN VADALSR+ +
Sbjct: 1021 -----TDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSEVE 1075
Query: 242 ALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSG 300
A + +L+ + V LS + LG+ D +D L+ IR AQ+ D + +
Sbjct: 1076 AER-SQVDLVNMMGTLH-VNALSKEVEPLGLGAADQADLLSRIRLAQERDEE-IKGWAQN 1132
Query: 301 NDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLF 360
N TE ++ + G + G+VC+P++ LK+ IL E+H+S+ SIHPG+ KMY DLK+ +
Sbjct: 1133 NKTE---YQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYY 1189
Query: 361 WWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRG 420
W G+K+DVA++V C CQ K EHQ P+GLL L +PEWKWD I+MDFVT LP +
Sbjct: 1190 HWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKS 1249
Query: 421 -HDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
H+A+WVVVDRLTKSAHF+ I+ +AE YI +V+LHG+P SIVSDRD RFTS+F
Sbjct: 1250 KHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKF 1309
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
WK Q ALG+++ LS+AYHPQTD QSERTIQ+LED+LR CVL+ GG W+ +L L+EF YN
Sbjct: 1310 WKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYN 1369
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
NS+ +SIGM+P+EALYGR CRTPLCW GE + GP +V ETTE+++ ++ ++K +Q R
Sbjct: 1370 NSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDR 1429
Query: 600 QKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG------ 653
QKSY +KRRKELEFQ GD V+L+ G GR +KL+P+++GPY++ +RVG
Sbjct: 1430 QKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL 1489
Query: 654 -LPPHLS 659
LPP L+
Sbjct: 1490 DLPPKLN 1496
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 657 bits (1696), Expect = 0.0
Identities = 334/654 (51%), Positives = 441/654 (67%), Gaps = 46/654 (7%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC FW E+ FLGHI+ ++VDP K++A+ W + TEIRSFL L GYY
Sbjct: 698 KLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYY 757
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF++GF+ +A P T+LT K FVW +CE F LK LT PVL LP+ +P++VY
Sbjct: 758 RRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYT 817
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DAS++GLG VLMQ GKV+AYASRQLR HE NYPTHDLE+A V+F LKIWR YLYG
Sbjct: 818 DASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGG---- 873
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
+ +VF+DHKSLKY+F+Q ELN+RQ RW+EL+ DYD + YHPG ANVVADALSRK +
Sbjct: 874 -KVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRK--RV 930
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTS 299
A + E L +C ++ + LG+ +D +D L R AQ+ D + + +
Sbjct: 931 GAAPGQSVEALVSEIGALRLCVVAREP--LGLEAVDRADLLTRARLAQEKD----EGLIA 984
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
+ E S+++ G + G+VC+P +EEL++ IL E+H S SIHPGATKMY DLK+
Sbjct: 985 ASKAEGSEYQFAANGTIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRY 1044
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
+ W G+KRDVA +V C +CQ K EHQ P
Sbjct: 1045 YQWVGMKRDVANWVAECDVCQLVKAEHQVP------------------------------ 1074
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
DAIWV++DRLTKSAHF+ I A LA+ Y+ +VKLHGVP SIVSDRD +FT F
Sbjct: 1075 --DAIWVIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAF 1132
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
W+ Q +G+K+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+ GG W HL L+EF YN
Sbjct: 1133 WRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYN 1192
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
NSY +SIGMAPFEALYGR C TPL W + E + G D V ETTE++R+++ MK +Q+R
Sbjct: 1193 NSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQAR 1252
Query: 600 QKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
Q+SY DKRR+ELEF+ GD V+L++ L G R++ KL+P+++GP++I +RVG
Sbjct: 1253 QRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERVG 1306
>At4g16910 retrotransposon like protein
Length = 687
Score = 605 bits (1560), Expect = e-173
Identities = 315/598 (52%), Positives = 417/598 (69%), Gaps = 28/598 (4%)
Query: 70 LALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGG 129
+A P TQLT K +F W +CERSF ELK LT APVL+LP+ EP+ VY DAS +GLG
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 130 VLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDH 189
VL+Q G V+AYASRQLR HEKNYPT+DLE+AAVVF LKIWR YLYG++ ++F +DH
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIF-----TDH 115
Query: 190 KSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALMVKEFE 249
KSLKY+F Q ELN+RQRRW++L+ DYD + YHPG AN V DALSR + A +
Sbjct: 116 KSLKYIFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAER-NQVN 174
Query: 250 LLEHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSGNDTEDSDF 308
L+ + L LS + LG+ + +D L+ IR AQ+ D + + N TE +
Sbjct: 175 LVNMMGTLHLNA-LSKEVEPLGLRAANQADLLSRIRSAQERDEE-IKGWAQNNKTE---Y 229
Query: 309 KVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRD 368
+ + G + G+VC P+++ LK+ IL+E+H+S+ SIHPG+ KMY DLK+ + W G+K+D
Sbjct: 230 QSSNNGTIVVNGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKD 289
Query: 369 VAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRG-HDAIWVV 427
VA++V +K EHQ P+G+L L +PEWKWD I MDFVT LP + H+A+WVV
Sbjct: 290 VARWV--------AKEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVV 341
Query: 428 VDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDAL 487
VDRLTKSAHF+ I+ +AE YI +V+LHG+P SIVSDRD RFTS+FWK Q L
Sbjct: 342 VDRLTKSAHFMAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVL 401
Query: 488 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIG 547
G+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+ GG W+ +L L+EF YNNS+ +SIG
Sbjct: 402 GTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIG 461
Query: 548 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKR 607
M+P+EALYGR RTPLCW GE + GP +V ETT+K++ ++ ++K +Q RQKSY +KR
Sbjct: 462 MSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKR 521
Query: 608 RKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG-------LPPHL 658
RKELEFQ GD V+L+ G GR +KL P+++GPY++ +RVG LPP L
Sbjct: 522 RKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKL 579
>At3g31970 hypothetical protein
Length = 1329
Score = 587 bits (1512), Expect = e-168
Identities = 305/628 (48%), Positives = 406/628 (64%), Gaps = 64/628 (10%)
Query: 28 IAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWD 87
++VD K++A+ W + TEIRSFLGLAGYY+RF++ F+ +A P T+LT K FVW
Sbjct: 659 VSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVPFVWS 718
Query: 88 AQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRV 147
+C+ F LK LT PVL LP+ EP++VY DAS++GL VLMQ GK
Sbjct: 719 PECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGK----------- 767
Query: 148 HEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRR 207
VF+DHKSLKY+F Q ELN+RQRR
Sbjct: 768 -------------------------------------VFTDHKSLKYIFTQPELNLRQRR 790
Query: 208 WLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSA-LMVKEFELLEHFRDMSLVCELSFQ 266
W+EL+ DYD + YH G ANVVADALSRK + S +V E L +C ++ +
Sbjct: 791 WMELVADYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALR-------LCVMAQE 843
Query: 267 SIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRGKVCIP 325
LG+ +D +D L +R AQ+ D + + + + + S+++ G + G+VC+P
Sbjct: 844 P--LGLEAVDRADLLTRVRLAQEKD----EGLIAASKADGSEYQFAANGTILVHGRVCVP 897
Query: 326 DNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVE 385
+EEL++ IL E+H S SIHP ATKMY DLK+ + W G+KRDVA +V C +CQ K E
Sbjct: 898 KDEELRREILSEAHASMFSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAE 957
Query: 386 HQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYP 445
HQ P GLL L + EWKWD I+MDFV LP R DAIWV+VDRLTKSAHF+ I
Sbjct: 958 HQVPGGLLQSLPILEWKWDFITMDFVVGLP-VSRTKDAIWVIVDRLTKSAHFLAIRKTDG 1016
Query: 446 VAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQS 505
LA+ Y+ +V+LHGVP SIVSDRD +FTS FW+ Q +G+K+++S+AYHPQTDGQS
Sbjct: 1017 AVLLAKKYVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQS 1076
Query: 506 ERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCW 565
ERTIQ+LED+LR+CVL++GG W HL L+EF YNNSY +SI MAPFEALYGR CRTPLCW
Sbjct: 1077 ERTIQTLEDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCW 1136
Query: 566 FESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTP 625
+ GE + G D V ETTE++R+++ MK +Q RQ+SY DKRR+ELEF+ GD V+L++
Sbjct: 1137 TQVGERSIYGADYVLETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAM 1196
Query: 626 LTGVGRALKSRKLTPKFIGPYQISDRVG 653
L G R++ KLTP+++GP++I +RVG
Sbjct: 1197 LRGPNRSISETKLTPRYMGPFRIVERVG 1224
>At4g07830 putative reverse transcriptase
Length = 611
Score = 483 bits (1244), Expect = e-136
Identities = 252/489 (51%), Positives = 328/489 (66%), Gaps = 34/489 (6%)
Query: 132 MQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKS 191
MQ GKV+AY SRQL+ HE NYPTHDLE+AAV F+DHKS
Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV-----------------------FTDHKS 37
Query: 192 LKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALMVKEFELL 251
LKY+F Q ELN+R RRW++L+ DYD + YHPG ANVV DALSRK + A + E L
Sbjct: 38 LKYIFTQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRK--RVGAAPGQSVETL 95
Query: 252 EHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKV 310
+C ++ + LG+ +D +D L+ ++ AQ+ D + + + + E +++
Sbjct: 96 VIEIGALRLCAVAREP--LGLEAVDQTDLLSRVQLAQEKD----EGLIAASKAEGFEYQF 149
Query: 311 DDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVA 370
G + G+VC+P ++EL++ IL E+H S SIHPGATKMY DLK+ + W G+KRDV
Sbjct: 150 AANGTILVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVG 209
Query: 371 QFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDR 430
+V C +CQ K+EHQ LL L +PEWKWD I+MDFV LP R DAIWV+VDR
Sbjct: 210 NWVEECDVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLP-VSRTKDAIWVIVDR 268
Query: 431 LTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSK 490
LTKSAHF+ I A LA+ Y+ +VKLHGVP SIVSDRD +FTS FW+ Q +G+K
Sbjct: 269 LTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTK 328
Query: 491 LRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAP 550
+++S+AYHPQTDGQSERTIQ+LED+LR+CVL+ G W HL L+EF YNNSY +SIGMAP
Sbjct: 329 VQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAP 388
Query: 551 FEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKRRKE 610
FE LYGR CRT LCW + GE + G D V E TE++R+++ MK +Q+RQ+SY DKRRKE
Sbjct: 389 FEVLYGRPCRT-LCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKE 447
Query: 611 LEFQEGDHV 619
LEF+ GD V
Sbjct: 448 LEFEVGDSV 456
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 441 bits (1134), Expect = e-124
Identities = 246/562 (43%), Positives = 321/562 (56%), Gaps = 120/562 (21%)
Query: 65 EGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASK 124
+GF+ +A P T+LT K FVW +CE F
Sbjct: 691 KGFASMAQPMTKLTEKDIPFVWSPECEEGFR----------------------------- 721
Query: 125 LGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFE 184
GKV+ YASRQLR HE NYPTHDLE+AA++F LKIW YLYG + +VF
Sbjct: 722 ----------GKVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVF--- 768
Query: 185 VFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALM 244
+DHKSLK +F Q ELN+RQRRW+EL+ DYD + YHPG NVVADALSRK + +
Sbjct: 769 --TDHKSLKDIFTQPELNLRQRRWMELVADYDLEIAYHPGKTNVVADALSRKRVGAAPGQ 826
Query: 245 VKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTSGNDTE 304
E +LV E+ G L++ + + + L+ VD +G
Sbjct: 827 SVE----------ALVSEI-------GALRL------CVVAREPLKLEAVDRAANGT--- 860
Query: 305 DSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSG 364
+ +VC+P +EEL++ IL E+H S SIHPGATKMY DLK+ + W G
Sbjct: 861 -----------ILVHERVCLPKDEELRREILSEAHASMFSIHPGATKMYRDLKRHYQWVG 909
Query: 365 LKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAI 424
+KRDVA +V C +CQ K EHQ P GLL L + EWK
Sbjct: 910 MKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPISEWK---------------------- 947
Query: 425 WVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQ 484
T A +P + Y+ +VKLHGVP SI+S RD +FTS FW+ Q
Sbjct: 948 ------KTDGAAVLP-----------KKYVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQ 990
Query: 485 DALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHS 544
+G+K+++S+AYHPQTDGQSERTIQ+LED+L++CVL+ GG W HL L++F YNNSY +
Sbjct: 991 VEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQA 1050
Query: 545 SIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYH 604
SIGMAPFEALYGR CRT LCW + GE + G D V ETTE++R+++ MK +Q RQ+SY
Sbjct: 1051 SIGMAPFEALYGRPCRTLLCWTQVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRSYA 1110
Query: 605 DKRRKELEFQEGDHVFLRVTPL 626
DKRR+ELEF+ G + RV P+
Sbjct: 1111 DKRRRELEFEVGTEIVERVGPV 1132
>At3g11970 hypothetical protein
Length = 1499
Score = 431 bits (1108), Expect = e-121
Identities = 245/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC F + +V +LGH I I DP+K+ AV +W ++ ++R FLGLAGYY
Sbjct: 782 KLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYY 841
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF+ F +A P LT K +F W A +++F +LK L APVL LP ++ FVV
Sbjct: 842 RRFVRSFGVIAGPLHALT-KTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVET 900
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DA G+G VLMQ+G +AY SRQL+ + + ++ EL AV+F ++ WRHYL S F +
Sbjct: 901 DACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFII 960
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
+D +SLKYL +Q+ Q++WL L ++D+ + Y G NVVADALSR
Sbjct: 961 K-----TDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSR----- 1010
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTS- 299
V+ E+L H+ M ++ D L I+ D + D++T+
Sbjct: 1011 ----VEGSEVL-----------------HMAMTVVECDLLKDIQAGYANDSQLQDIITAL 1049
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
D + + Q +LR + K+ +P N+ +K IL H S + H G + +K L
Sbjct: 1050 QRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGL 1109
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F+W G+ +D+ ++ +C CQ+ K + GLL PL +P+ W +SMDF+ LP
Sbjct: 1110 FYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLP-VSG 1168
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G I VVVDRL+K+AHFI ++ Y +A Y+ +V KLHG P SIVSDRD FTS F
Sbjct: 1169 GKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEF 1228
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
W+ G L+L+SAYHPQ+DGQ+E + LE LR ++ W L L E+ YN
Sbjct: 1229 WREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYN 1288
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
+YHSS M PFE +YG+ L + V + + E + + ++ + +Q R
Sbjct: 1289 TNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHR 1348
Query: 600 QKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKFIGPYQISDRVG 653
K + D+ R E EF+ GD+V++++ P ++ ++KL+PK+ GPY+I DR G
Sbjct: 1349 MKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
>At1g36590 hypothetical protein
Length = 1499
Score = 426 bits (1096), Expect = e-119
Identities = 244/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC F + +V +LGH I I DP+K+ AV +W ++ ++R FLGLAGYY
Sbjct: 782 KLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYY 841
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF+ F +A P LT K +F W A +++F +LK L APVL LP ++ FVV
Sbjct: 842 RRFVRSFGVIAGPLHALT-KTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVET 900
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DA G+G VLMQ+G +AY SRQL+ + + ++ EL AV+F ++ WRHYL S F +
Sbjct: 901 DACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFII 960
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
+D +SLKYL +Q+ Q++WL L ++D+ + Y G NVVADALSR
Sbjct: 961 K-----TDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSR----- 1010
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTS- 299
V+ E+L H+ M ++ D L I+ D + D++T+
Sbjct: 1011 ----VEGSEVL-----------------HMAMTVVECDLLKDIQAGYANDSQLQDIITAL 1049
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
D + + Q +LR + K+ +P N+ +K IL H S + H G + +K L
Sbjct: 1050 QRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGL 1109
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F+ G+ +D+ ++ +C CQ+ K + GLL PL +P+ W +SMDF+ LP
Sbjct: 1110 FYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLP-VSG 1168
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G I VVVDRL+K+AHFI ++ Y +A+ Y+ +V KLHG P SIVSDRD FTS F
Sbjct: 1169 GKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSEF 1228
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
W+ G L+L+SAYHPQ+DGQ+E + LE LR ++ W L L E+ YN
Sbjct: 1229 WREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYN 1288
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
+YHSS M PFE +YG+ L + V + + E + + ++ + +Q R
Sbjct: 1289 TNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHR 1348
Query: 600 QKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKFIGPYQISDRVG 653
K + D+ R E EF+ GD+V++++ P ++ ++KL+PK+ GPY+I DR G
Sbjct: 1349 MKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 420 bits (1079), Expect = e-117
Identities = 208/395 (52%), Positives = 281/395 (70%), Gaps = 14/395 (3%)
Query: 273 LKIDSDFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKK 332
LKI +L IR AQ+ D + + T N TE ++ + G + G+VC+P++ LK+
Sbjct: 500 LKIWRSYL--IRLAQERDEE-IKGWTLNNKTE---YQTSNNGTIVVNGRVCVPNDRALKE 553
Query: 333 LILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQKSKVEHQKPAGL 392
IL E+H+S+ SIHPG+ KMY DLK+ + W G+++DVA++V C CQ K EHQ P+GL
Sbjct: 554 EILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGL 613
Query: 393 LTPLDVPEWKWDSISMDFVTSLPNTPRG-HDAIWVVVDRLTKSAHFIPININYPVAQLAE 451
L L + EWKWD I+MDFVT LP + H+A+WVVVDRLTKSAHF+ I+ +AE
Sbjct: 614 LQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAE 673
Query: 452 IYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQS 511
YI +++LHG+P SIVSDRD RFTS+FW Q ALG+++ LS+AYHPQTDGQSERTIQ+
Sbjct: 674 KYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQT 733
Query: 512 LEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGES 571
LED+LR CVL+ GG W+ +L LIEF YNNS+ +SIGM+P+EALYGR CRTPLCW GE
Sbjct: 734 LEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGER 793
Query: 572 VVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGR 631
+ GP +V ETTE+++ ++ ++K +Q RQKSY +KRRKELEFQ GD V+L+ G GR
Sbjct: 794 RLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGR 853
Query: 632 ALKSRKLTPKFIGPYQISDRVG-------LPPHLS 659
+KL+P+++GPY++ +RVG LPP L+
Sbjct: 854 FTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLN 888
Score = 218 bits (555), Expect = 8e-57
Identities = 105/172 (61%), Positives = 128/172 (74%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
L+AKLSK FW V FLGH+I ++VDP K+ ++ +W ++ TEIRSFLGLAGYYR
Sbjct: 336 LFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYR 395
Query: 62 RFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCD 121
RF+ F+ +A P T+LT K +F W +CE+SF ELK L APVL+LP+ EP+ VY D
Sbjct: 396 RFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTD 455
Query: 122 ASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYL 173
AS +GLG VLMQ G V+AYASRQLR HEKNYPTHDLE+AAVVF LKIWR YL
Sbjct: 456 ASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYL 507
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 411 bits (1057), Expect = e-115
Identities = 227/499 (45%), Positives = 297/499 (59%), Gaps = 67/499 (13%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC FW E+ FLGHI+ ++VDP K++A+ W + TEIRSFLG AGYY
Sbjct: 672 KLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYY 731
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF++GF+ +A P T+LT K FVW +CE F LK LT PVL LP+ +P++VY
Sbjct: 732 RRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYT 791
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DAS++GLG VLMQ GKV+AYASRQL HE NYPTHDLE+AAV+F LKIWR YLYG + +V
Sbjct: 792 DASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQV 851
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
F +DHKSLKY+F Q ELN+RQRRW+EL+ DYD + YHPG ANVV DALSRK +
Sbjct: 852 F-----TDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVVDALSRK--RV 904
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTS 299
A + + E+L +C ++ + LG+ +D +D L +R AQK
Sbjct: 905 GAALGQSVEVLVSEIGALRLCAVAREP--LGLEAVDRADLLTRVRLAQK----------- 951
Query: 300 GNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
D+G+ ATKMY DLK+
Sbjct: 952 -----------KDEGLR--------------------------------ATKMYRDLKRY 968
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
+ W G+K DVA +V C +CQ K EHQ G+L L +PEWKWD I+MD V L R
Sbjct: 969 YQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGL-RVSR 1027
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASI--VSDRDPRFTS 477
DAIWV+VDRLTKSAHF+ I A LA+ ++ +VKLHGVP ++ DR +
Sbjct: 1028 TKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDRQRSYAD 1087
Query: 478 RFWKRLQDALGSKLRLSSA 496
+ + L+ +G ++ L A
Sbjct: 1088 KRRRELEFEVGDRVYLKMA 1106
Score = 70.9 bits (172), Expect = 2e-12
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 571 SVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVG 630
+ VL V E K+ + MK +Q RQ+SY DKRR+ELEF+ GD V+L++ L G
Sbjct: 1054 AAVLAKKFVSEIV-KLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPN 1112
Query: 631 RALKSRKLTPKFIGPYQISDRV 652
R++ KL+P+++GP++I +RV
Sbjct: 1113 RSISETKLSPRYMGPFKIVERV 1134
>At1g35370 hypothetical protein
Length = 1447
Score = 398 bits (1022), Expect = e-111
Identities = 234/655 (35%), Positives = 356/655 (53%), Gaps = 43/655 (6%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AK SK LGH I +I DP+K+ AV +W T +V ++R FLG AGYY
Sbjct: 761 KLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYY 812
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF+ F +A P LT K F W + + +F+ LK L APVL LP ++ F+V
Sbjct: 813 RRFVRNFGVIAGPLHALT-KTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVET 871
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DA G+ VLMQ G +AY SRQL+ + + ++ EL A +F ++ WRHYL S F +
Sbjct: 872 DACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFII 931
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
+D +SLKYL +Q+ Q++WL L ++D+ + Y G N+VADALSR
Sbjct: 932 K-----TDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSR----- 981
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTSG 300
V+ E+L H+ + ++ DFL I+ A + D D++++
Sbjct: 982 ----VEGSEVL-----------------HMALSIVECDFLKEIQVAYESDGVLKDIISAL 1020
Query: 301 NDTEDSDFKVD-DQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKL 359
D+ Q +LR + K+ +P++ E+ +L+ H S + G + +K L
Sbjct: 1021 QQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVKSL 1080
Query: 360 FWWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPR 419
F+W G+ +D+ F+ +C CQ+ K ++ GLL PL +P+ W +SMDF+ LPN+
Sbjct: 1081 FYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSG- 1139
Query: 420 GHDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
G I VVVDRL+K+AHF+ + Y +A+ ++ +V K HG P SIVSDRD FTS F
Sbjct: 1140 GKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDF 1199
Query: 480 WKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYN 539
WK G +LR+SSAYHPQ+DGQ+E + LE+ LR + W+ LPL E+ YN
Sbjct: 1200 WKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYN 1259
Query: 540 NSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSR 599
+YHSS M PFE +YG+ L + V + + E + ++ + +Q R
Sbjct: 1260 TNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHR 1319
Query: 600 QKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALK-SRKLTPKFIGPYQISDRVG 653
K + D+ R E F GD V++++ P L+ ++KL+PK+ GPY+I ++ G
Sbjct: 1320 MKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCG 1374
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 347 bits (890), Expect = 1e-95
Identities = 165/286 (57%), Positives = 213/286 (73%), Gaps = 1/286 (0%)
Query: 368 DVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVV 427
DVA +V C +CQ K EHQ P G+L L +PEWKWD I++DFV LP R DAIWV+
Sbjct: 942 DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLP-VSRTKDAIWVI 1000
Query: 428 VDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDAL 487
VDRLTKSAHF+ I A LA+ Y+ +VKLHGVP SIVSDRD +FTS FW+ Q +
Sbjct: 1001 VDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEM 1060
Query: 488 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIG 547
G+K+++S+AYHPQT GQSERTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +SIG
Sbjct: 1061 GTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIG 1120
Query: 548 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYHDKR 607
MAPFEALY R CRTPLC + GE + G D V ETTE++R+++ MK +Q RQ+SY DKR
Sbjct: 1121 MAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKR 1180
Query: 608 RKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
R+ELEF+ GD V+L++ L G R++ KL+P+++GP++I +RVG
Sbjct: 1181 RRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVG 1226
Score = 308 bits (789), Expect = 6e-84
Identities = 159/291 (54%), Positives = 201/291 (68%), Gaps = 10/291 (3%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC FW E+ FLGHI+ ++VDP K++A+ W T + TEIRSFLGLAGYY
Sbjct: 647 KLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYY 706
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRF++GF+ +A P T+LT K FVW +CE F LK LT PVL LP+ EP++VY
Sbjct: 707 RRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYT 766
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DAS +GLG VLMQ GKV+AYASRQLR HE NYPTHDLE+AAV+F LKIWR YLYG
Sbjct: 767 DASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGG---- 822
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
+VF+DHKSLKY+F Q ELN+RQR+W+EL+ DYD + YHPG ANVVADALS K +
Sbjct: 823 -NVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVADALSHK--RV 879
Query: 241 SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKID-SDFLNSIREAQKVD 290
A + E L +C ++ + LG+ +D +D L +R AQ+ D
Sbjct: 880 GAAPGQSVEALVSEIGALRLCAVAREP--LGLEAVDRADLLTRVRLAQEKD 928
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 319 bits (818), Expect = 3e-87
Identities = 170/330 (51%), Positives = 223/330 (67%), Gaps = 12/330 (3%)
Query: 82 KSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYA 141
K W CE+SF ELK LT APVL+LP+ EP+ VY DAS +GLG VLMQ G V+AYA
Sbjct: 371 KCSFWQRSCEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYA 430
Query: 142 SRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKEL 201
SRQL HEKNYPTHDLE+AAVVF LKIWR YLYG+ + ++++DHKSLKY+F Q EL
Sbjct: 431 SRQLWKHEKNYPTHDLEMAAVVFALKIWRSYLYGA-----KVQIYTDHKSLKYIFIQPEL 485
Query: 202 NMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALMVKEFELLEHFRDMSLVC 261
N+RQRRW+EL+ DYD + YHPG AN VADALSR+ + A + +L+ + V
Sbjct: 486 NLRQRRWMELVADYDLDIAYHPGKANQVADALSRRRSEVEAER-SQVDLVNMMGTLH-VN 543
Query: 262 ELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRG 320
LS + LG+ D +D L+ IR AQ+ D + + N TE ++ + G + G
Sbjct: 544 ALSKEVESLGLGAADQADLLSRIRLAQERD-EEIKGWALNNKTE---YQTSNNGTIVVNG 599
Query: 321 KVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQ 380
+VC+P++ LK+ IL E+H+S+ SIHPG+ KMY DLK+ + W G+K+DVA++V C CQ
Sbjct: 600 RVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQ 659
Query: 381 KSKVEHQKPAGLLTPLDVPEWKWDSISMDF 410
K EHQ P+GLL L +PEWKWD I+MDF
Sbjct: 660 LVKAEHQVPSGLLQNLPIPEWKWDHITMDF 689
Score = 180 bits (457), Expect = 2e-45
Identities = 90/183 (49%), Positives = 121/183 (65%), Gaps = 26/183 (14%)
Query: 484 QDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYH 543
Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR CVL+ GG W+ +L L
Sbjct: 692 QKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLTL---------- 741
Query: 544 SSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSY 603
ALYGR CRTPLCW GE + GP +V ETTE+++ ++ ++K + RQKSY
Sbjct: 742 ---------ALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAHDRQKSY 792
Query: 604 HDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG-------LPP 656
+KRRKELEFQ GD V+L+ G GR +KL+P+++GPY++ +RVG LPP
Sbjct: 793 ANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPP 852
Query: 657 HLS 659
L+
Sbjct: 853 KLN 855
>At4g03840 putative transposon protein
Length = 973
Score = 314 bits (805), Expect = 9e-86
Identities = 167/330 (50%), Positives = 222/330 (66%), Gaps = 12/330 (3%)
Query: 82 KSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYA 141
K W CE++F ELK LT APVL+LP+ EP+ VY DAS +GL VLMQ G V+AYA
Sbjct: 371 KCSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPYTVYTDASVVGLECVLMQKGSVIAYA 430
Query: 142 SRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKEL 201
SRQLR HEKNYPTHDLE+AAVVF LKIWR YLYG+ + ++++DHKSLKY+F Q EL
Sbjct: 431 SRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGA-----KVQIYTDHKSLKYIFTQPEL 485
Query: 202 NMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALMVKEFELLEHFRDMSLVC 261
N+RQRRW+EL+ DYD + YH G AN VADALSR+ + A + +L+ + V
Sbjct: 486 NLRQRRWMELVADYDLDIAYHAGKANQVADALSRRRSEVEAER-SQVDLVNMMGTLH-VN 543
Query: 262 ELSFQSIHLGMLKID-SDFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRG 320
LS + LG+ D ++ L+ IR AQ+ D + + N TE ++ + G + G
Sbjct: 544 ALSKEVEPLGLGAADQANLLSRIRLAQERD-EEIKGWALNNKTE---YQTSNNGTIVVNG 599
Query: 321 KVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLICQ 380
+VC+P+N LK+ IL E+H+S+ SIHPG+ K+Y DLK+ + W G+K+DVA++V C CQ
Sbjct: 600 RVCVPNNRALKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQ 659
Query: 381 KSKVEHQKPAGLLTPLDVPEWKWDSISMDF 410
K EHQ P+GLL L +PEWKWD I+MDF
Sbjct: 660 LVKAEHQVPSGLLQNLPIPEWKWDHITMDF 689
Score = 184 bits (468), Expect = 1e-46
Identities = 92/188 (48%), Positives = 123/188 (64%), Gaps = 26/188 (13%)
Query: 479 FWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTY 538
FWK Q ALG+++ LS+AYHPQTDGQSERTIQ+LED+LR C L+ GG W+ +L L
Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744
Query: 539 NNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQS 598
ALYGR CRTPLCW GE + GP +V ETTE+++ ++ ++K +Q
Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790
Query: 599 RQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG----- 653
RQKSY +KRRKELEFQ D V+L+ G GR +KL+P+++GPY++ +RVG
Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850
Query: 654 --LPPHLS 659
LPP L+
Sbjct: 851 LDLPPKLN 858
>At4g03650 putative reverse transcriptase
Length = 839
Score = 282 bits (722), Expect = 4e-76
Identities = 134/222 (60%), Positives = 164/222 (73%), Gaps = 5/222 (2%)
Query: 1 RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
+L+AKLSKC FW E+ FLGHI+ ++VDP K++A+ W + TEIRSFLGLAGYY
Sbjct: 597 KLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYY 656
Query: 61 RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
RRFI+GF+ +A P T+LT K FVW +CE F LK LT PVL LP+ EP++VY
Sbjct: 657 RRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYT 716
Query: 121 DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
DAS +GLG LMQ GKV+AYASRQLR HE NYPTHDLE+AAV+F LKIWR YLYG
Sbjct: 717 DASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGG---- 772
Query: 181 FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYH 222
+ +VF+DHKSLKY+F Q ELN+RQRRW+EL+ DYD + YH
Sbjct: 773 -KVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYH 813
Score = 41.2 bits (95), Expect = 0.002
Identities = 16/23 (69%), Positives = 22/23 (95%)
Query: 487 LGSKLRLSSAYHPQTDGQSERTI 509
+G+K+++S+ YHPQTDGQSERTI
Sbjct: 817 MGTKVQMSTTYHPQTDGQSERTI 839
>At3g29480 hypothetical protein
Length = 718
Score = 279 bits (714), Expect = 3e-75
Identities = 156/334 (46%), Positives = 212/334 (62%), Gaps = 32/334 (9%)
Query: 28 IAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWD 87
++VD K++A+ W + TEIRSFLGLAGYYRRF++GF+ +A P T+LT K FVW
Sbjct: 416 VSVDLEKIEAIKDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFVWS 475
Query: 88 AQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRV 147
+CE F LK LT PVL LP+ E ++VY DAS++GLG VLMQ GKV+AYASRQLR
Sbjct: 476 PECEEGFVSLKEILTSTPVLALPEHGESYMVYTDASRVGLGCVLMQRGKVIAYASRQLRK 535
Query: 148 HEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRR 207
HE NYPTHDLE++A VF+DHKSLKY+ Q ELN+RQRR
Sbjct: 536 HEGNYPTHDLEMSA-----------------------VFTDHKSLKYIITQPELNLRQRR 572
Query: 208 WLELLKDYDFGLNYHPG*ANVVADALSRKTLHMSALMVKEFELLEHFRDMSLVCELSFQS 267
W+EL+ DYD + YH G A+VVADALSRK + ++ E L+ R + L C ++ +
Sbjct: 573 WMELVADYDLEIAYHHGKASVVADALSRKRVGVAPGQSVE-ALVSEIRALRL-CAVAREP 630
Query: 268 IHLGMLKIDS-DFLNSIREAQKVDLKFVDLMTSGNDTEDSDFKVDDQGVLRFRGKVCIPD 326
LG+ +D D L+ +R AQ+ D + + + + E S ++ G + G+VC+ +
Sbjct: 631 --LGLEAVDRVDLLSRVRLAQEKD----EGLIAASKAEGSKYQFAANGTILVHGRVCVLN 684
Query: 327 NEELKKLILEESHKSRLSIHPGATKMYHDLKKLF 360
+EEL++ IL E+H S SIHPGATKMY DLK+ +
Sbjct: 685 DEELRREILSEAHASMFSIHPGATKMYRDLKEYY 718
>At2g06890 putative retroelement integrase
Length = 1215
Score = 258 bits (660), Expect = 6e-69
Identities = 167/440 (37%), Positives = 235/440 (52%), Gaps = 40/440 (9%)
Query: 2 LYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYR 61
LYA L KC F + FLG ++ + VD KV A+ W + K+V E+RSF GLAG+YR
Sbjct: 601 LYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYR 660
Query: 62 RFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCD 121
RF + FS + P T++ K F W+ E +F LK +LT APVLIL + + F + CD
Sbjct: 661 RFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECD 720
Query: 122 ASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVF 181
AS +G+G VLMQD K++A+ S +L NYPT+D EL A+V L+ W+HYL+
Sbjct: 721 ASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPK----- 775
Query: 182 RFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMS 241
F + +DH+SLK+L Q++LN R RW+E ++ + + + Y G NVVADALS++ +S
Sbjct: 776 VFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQRYTLLS 835
Query: 242 ALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTSGN 301
L VK L F + V E D DF +E K KF SG
Sbjct: 836 TLNVK----LMGFEQIKEVYE------------TDHDF----QEVYKACEKF----ASGR 871
Query: 302 DTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFW 361
F L + ++C+P N L+ L + E+H L H G K + + F
Sbjct: 872 YFRQDKF-------LFYENRLCVP-NCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFR 923
Query: 362 WSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGH 421
W +K DV + C C+++K + Q P GL TPL +P+ W+ ISMDFV LP T G
Sbjct: 924 WPHMKCDVKRICGRCNTCKQAKSKIQ-PNGLYTPLPIPKHPWNDISMDFVMGLPRT--GK 980
Query: 422 DAIWVVVDRLTKSAHFIPIN 441
D+I+VV F PI+
Sbjct: 981 DSIFVVYSPFQIVYGFNPIS 1000
>At3g29490 hypothetical protein
Length = 438
Score = 253 bits (646), Expect = 2e-67
Identities = 132/289 (45%), Positives = 175/289 (59%), Gaps = 53/289 (18%)
Query: 365 LKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAI 424
+KRDVA +V C +CQ K EHQ P G+L L +PEW NT
Sbjct: 1 MKRDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEW--------------NT------- 39
Query: 425 WVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQ 484
F+ I A LA+ Y+ +VKLHGVPA
Sbjct: 40 ------------FLAIRKTDGAAVLAKKYVSEIVKLHGVPAE------------------ 69
Query: 485 DALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHS 544
+G+K+++S+ YHPQTDGQ ERTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +
Sbjct: 70 --MGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQA 127
Query: 545 SIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRERMKASQSRQKSYH 604
IGMAPFEALYGR CRTPLCW + GE + G D V ETTE++R+++ MK +Q RQ SY
Sbjct: 128 GIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQWSYA 187
Query: 605 DKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRVG 653
DKRR+ELEF+ GD V+L++ L G R++ KL+ +++GP++I +RVG
Sbjct: 188 DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVG 236
>At4g07850 putative polyprotein
Length = 1138
Score = 210 bits (534), Expect = 2e-54
Identities = 108/251 (43%), Positives = 152/251 (60%), Gaps = 2/251 (0%)
Query: 313 QGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQF 372
+G L + ++CIP N L++L + E+H L H G +K ++ F W +KRDV +
Sbjct: 742 EGFLFYDNRLCIP-NSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERM 800
Query: 373 VYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLT 432
C C+++K + Q P GL TPL +P W+ ISMDFV LP T G D+I+VVVDR +
Sbjct: 801 CERCTTCKQAKAKSQ-PHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFS 859
Query: 433 KSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLR 492
K AHFIP + +A ++ VV+LHG+P +IVSDRD +F S FWK L LG+KL
Sbjct: 860 KMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLL 919
Query: 493 LSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFE 552
S+ HPQTDGQ+E ++L LLR + + W+ LP +EF YN+S HS+ +PF+
Sbjct: 920 FSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQ 979
Query: 553 ALYGRRCRTPL 563
+YG TPL
Sbjct: 980 IVYGFNPITPL 990
Score = 183 bits (464), Expect = 3e-46
Identities = 96/209 (45%), Positives = 133/209 (62%), Gaps = 5/209 (2%)
Query: 28 IAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWD 87
+ VD KV A+ +W + KSV ++RSF GLAG+YRRF+ FS LA P T++ K F W+
Sbjct: 537 VKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKNVGFKWE 596
Query: 88 AQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRV 147
E +F LK +LT APVL LP + F + CDA +G+G VLMQD K +AY S +L
Sbjct: 597 QAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYFSEKLGG 656
Query: 148 HEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRR 207
NYPT+D EL A+V L+ W+HYL+ F + +DH+SLK+L Q++LN R R
Sbjct: 657 ATLNYPTYDKELYALVRALQTWQHYLWPK-----EFVIHTDHESLKHLKGQQKLNKRHAR 711
Query: 208 WLELLKDYDFGLNYHPG*ANVVADALSRK 236
W+E ++ + + + Y G NVVADALSR+
Sbjct: 712 WVEFIETFPYVIKYKKGKDNVVADALSRR 740
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 163 bits (413), Expect = 2e-40
Identities = 97/238 (40%), Positives = 137/238 (56%), Gaps = 9/238 (3%)
Query: 8 KCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGF 67
KC F + E LGH I G I VD +K+D + Q + K+V +IRSFLG A +YRRFI+ F
Sbjct: 242 KCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGHAEFYRRFIKDF 301
Query: 68 SKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGL 127
SK+A P T+L CK F +D C ++F+ +K L AP+ P + PF + CDA +
Sbjct: 302 SKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPIFQAPNWDHPFEIMCDAFDYAV 361
Query: 128 GGVLMQ--DGK--VVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFRF 183
G VL Q D K V+ YASR + + Y T + EL AVVF + R YL G F+
Sbjct: 362 GAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELLAVVFAFEKIRSYLVG-----FKV 416
Query: 184 EVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHMS 241
+V+ DH +L++++ +KE R RW+ LL+++D + G N VAD LSR + S
Sbjct: 417 KVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVENGVADHLSRMRIEDS 474
Score = 42.0 bits (97), Expect = 0.001
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 501 TDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCR 560
T GQ E + + ++D+L V W + L + Y +Y + IG PF+ LYG+ C
Sbjct: 524 TSGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCH 583
Query: 561 TPL 563
P+
Sbjct: 584 LPV 586
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,054,140
Number of Sequences: 26719
Number of extensions: 653190
Number of successful extensions: 1707
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1519
Number of HSP's gapped (non-prelim): 107
length of query: 659
length of database: 11,318,596
effective HSP length: 106
effective length of query: 553
effective length of database: 8,486,382
effective search space: 4692969246
effective search space used: 4692969246
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148291.4