BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.9 - phase: 0
(52 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02830 zinc finger protein 1 (zfn1) 98 9e-22
At5g16540 zinc finger protein 3 (ZFN3) 86 5e-18
At3g06410 hypothetical protein 62 7e-11
At1g04990 zinc finger protein 2, putative 62 7e-11
At2g47850 unknown protein 61 1e-10
At5g18550 zinc finger -like protein 60 2e-10
At3g48440 unknown protein 59 6e-10
At1g29570 zinc finger protein, putative 59 6e-10
At2g32930 putative protein 58 1e-09
At3g12680 floral homeotic protein HUA1 (HUA1) 57 1e-09
At5g63260 unknown protein 56 4e-09
At1g29600 zinc finger protein, putative 47 2e-06
At3g51120 putative protein 32 0.047
At3g51950 unknown protein 30 0.23
At2g35430 hypothetical protein 29 0.39
At1g10320 unknown protein 29 0.39
At5g06420 unknown protein 28 1.1
At1g01350 unknown protein (At1g01350/F6F3_27) 28 1.1
At2g47680 putative ATP-dependent RNA helicase A 27 1.5
At1g21570 glycine-rich RNA-binding protein grp1a, putative 27 2.0
>At3g02830 zinc finger protein 1 (zfn1)
Length = 397
Score = 97.8 bits (242), Expect = 9e-22
Identities = 41/52 (78%), Positives = 46/52 (87%)
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
MWQM+L ETME+G YPE PGEPDCSYYIRTGLCRFG+TCRFNHP +R+LV
Sbjct: 21 MWQMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELV 72
Score = 54.3 bits (129), Expect = 1e-08
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 50
+PE PG+P+C +Y++TG C+FG C+F+HP +R+
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 304
Score = 50.8 bits (120), Expect = 1e-07
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP E DC+Y++RTG C+FG TC+FNHP
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHP 157
Score = 46.6 bits (109), Expect = 2e-06
Identities = 18/39 (46%), Positives = 25/39 (63%)
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P + S P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 308 PDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
>At5g16540 zinc finger protein 3 (ZFN3)
Length = 375
Score = 85.5 bits (210), Expect = 5e-18
Identities = 38/53 (71%), Positives = 43/53 (80%), Gaps = 1/53 (1%)
Query: 1 MWQMSLRPSETME-SGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
MWQM+L +TM G YPE GEPDC+YYIRTGLCRFG+TCRFNHP +RKLV
Sbjct: 22 MWQMNLGSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLV 74
Score = 57.8 bits (138), Expect = 1e-09
Identities = 19/35 (54%), Positives = 28/35 (79%)
Query: 15 GPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
G YPE G+P+C +Y++TG C+FG TC+F+HP N+
Sbjct: 82 GEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNK 116
Score = 54.3 bits (129), Expect = 1e-08
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 50
+PE PG+P+C +Y++TG C+FG C+F+HP +R+
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 273
Score = 53.5 bits (127), Expect = 2e-08
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP P E DCSY++R G C+FG TC+FNHP
Sbjct: 130 YPLRPNEDDCSYFLRIGQCKFGGTCKFNHP 159
Score = 47.0 bits (110), Expect = 2e-06
Identities = 18/39 (46%), Positives = 25/39 (63%)
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P + S P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 277 PDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 315
>At3g06410 hypothetical protein
Length = 437
Score = 61.6 bits (148), Expect = 7e-11
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MWQMSLRPSETMESG--PYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
MW++ L G YPE P EPDC YY+RTG+C +G+ CRFNHP +R V
Sbjct: 8 MWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 61
Score = 58.9 bits (141), Expect = 5e-10
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP PGE +CSYY+RTG C+FG TCRFNHP
Sbjct: 120 YPLRPGEKECSYYLRTGQCKFGLTCRFNHP 149
Score = 54.3 bits (129), Expect = 1e-08
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
PS S +P+ P +P+C Y++RTG C+FG++CR++HP
Sbjct: 270 PSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHP 308
Score = 50.1 bits (118), Expect = 2e-07
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 13 ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
E+G PE G P C +++RTG C+FGA+C+++HP
Sbjct: 68 EAGALPERMGHPVCQHFMRTGTCKFGASCKYHHP 101
Score = 37.0 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
P PG C+++ + G+C+FG C+F+H + L
Sbjct: 326 PLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSL 359
>At1g04990 zinc finger protein 2, putative
Length = 404
Score = 61.6 bits (148), Expect = 7e-11
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
+M + + E PYP+ PGE DC +Y+RTGLC +G++CR+NHP
Sbjct: 30 KMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHP 73
Score = 51.6 bits (122), Expect = 7e-08
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
PE G+PDC Y+++TG C++G TC+++HP +R
Sbjct: 88 PERIGQPDCEYFLKTGACKYGPTCKYHHPKDR 119
Score = 46.6 bits (109), Expect = 2e-06
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P GE C YY+RTG CRFG C+F+HP
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHP 161
Score = 40.0 bits (92), Expect = 2e-04
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
++S P + P PG+P C + G C+FG C+F+HP
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP 333
Score = 37.4 bits (85), Expect = 0.001
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 19 EHPGEPDCSYYIRTGLCRFGATCRFNHP 46
E +P+C +++ TG C++G C+++HP
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHP 287
>At2g47850 unknown protein
Length = 553
Score = 60.8 bits (146), Expect = 1e-10
Identities = 24/44 (54%), Positives = 31/44 (69%)
Query: 9 SETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
S + S YPE PG PDC+YY+RTG+C +G CR+NHP +R V
Sbjct: 108 SNWLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV 151
Score = 57.4 bits (137), Expect = 1e-09
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE PGEP+C YY++TG C+FG +C+F+HP +R
Sbjct: 371 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDR 403
Score = 57.4 bits (137), Expect = 1e-09
Identities = 20/35 (57%), Positives = 28/35 (79%)
Query: 14 SGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
+G YPE GEP C +Y++TG C+FGA+C+F+HP N
Sbjct: 158 TGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 192
Score = 50.4 bits (119), Expect = 2e-07
Identities = 17/30 (56%), Positives = 24/30 (79%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YP G+ +CSYY++TG C+FG TC+F+HP
Sbjct: 207 YPVREGDNECSYYLKTGQCKFGITCKFHHP 236
Score = 44.7 bits (104), Expect = 9e-06
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PG C++Y++ G C+FG+TC+F+HP
Sbjct: 418 PLRPGVQRCTFYVQNGFCKFGSTCKFDHP 446
>At5g18550 zinc finger -like protein
Length = 456
Score = 60.5 bits (145), Expect = 2e-10
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE P EPDC YY+RTG+C +G+ CRFNHP NR
Sbjct: 39 FPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNR 71
Score = 53.1 bits (126), Expect = 3e-08
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
+P PGE +CSY++RTG C+FG+TCR++HP
Sbjct: 133 FPLRPGEKECSYFMRTGQCKFGSTCRYHHP 162
Score = 52.4 bits (124), Expect = 4e-08
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 13 ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
E+G +PE G+P C +++RTG C+FGA+C+++HP
Sbjct: 81 EAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHP 114
Score = 50.8 bits (120), Expect = 1e-07
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
+P+ P +P+C Y++RTG C+FG +CRF+HP
Sbjct: 288 FPQRPEQPECQYFMRTGDCKFGTSCRFHHP 317
Score = 36.2 bits (82), Expect = 0.003
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNH 45
P PG C+++ + G+C+FG C+F+H
Sbjct: 334 PLRPGAVPCTHFAQHGICKFGPACKFDH 361
>At3g48440 unknown protein
Length = 448
Score = 58.5 bits (140), Expect = 6e-10
Identities = 23/42 (54%), Positives = 29/42 (68%)
Query: 9 SETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRK 50
SE YP PG DCS+Y+RTG C+FG++C+FNHP RK
Sbjct: 99 SENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARK 140
Score = 52.4 bits (124), Expect = 4e-08
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 12 MESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
M + +PE P +P+CSYY++TG C+F C+++HP NR
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNR 375
Score = 48.9 bits (115), Expect = 5e-07
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PGE +C YY+R G C++GA C+FNHP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 42.7 bits (99), Expect = 3e-05
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 25 DCSYYIRTGLCRFGATCRFNH 45
DC YY RTG C++G TCRFNH
Sbjct: 163 DCKYYFRTGGCKYGETCRFNH 183
Score = 40.0 bits (92), Expect = 2e-04
Identities = 15/38 (39%), Positives = 21/38 (54%)
Query: 8 PSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
P + P P + C+YY R G+C+FG CRF+H
Sbjct: 380 PPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
>At1g29570 zinc finger protein, putative
Length = 321
Score = 58.5 bits (140), Expect = 6e-10
Identities = 23/48 (47%), Positives = 33/48 (67%), Gaps = 1/48 (2%)
Query: 3 QMSLRPSETM-ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
Q ++ E M +S PYP PG+ DC +Y++ GLCR+ ++CRFNHP R
Sbjct: 37 QDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84
>At2g32930 putative protein
Length = 453
Score = 57.8 bits (138), Expect = 1e-09
Identities = 20/44 (45%), Positives = 30/44 (67%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
+M + +S PYP+ PGE DC +++RTG C +G +CR+NHP
Sbjct: 27 RMKVNEDNMEQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHP 70
Score = 47.4 bits (111), Expect = 1e-06
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P GE C YY++TGLCRFG C+F+HP
Sbjct: 127 PMRQGEKPCPYYMQTGLCRFGVACKFHHP 155
Score = 40.8 bits (94), Expect = 1e-04
Identities = 15/32 (46%), Positives = 22/32 (67%), Gaps = 4/32 (12%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
PE G+PDC TG C++G TC+++HP +R
Sbjct: 86 PERVGQPDCE----TGACKYGPTCKYHHPKDR 113
Score = 38.9 bits (89), Expect = 5e-04
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNH 45
P PG+P C + G C+FGA C+F+H
Sbjct: 305 PARPGQPACGNFKAYGFCKFGANCKFDH 332
Score = 35.4 bits (80), Expect = 0.006
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 25 DCSYYIRTGLCRFGATCRFNHPPNRKL 51
+C +++ TG C++G C+++HP R L
Sbjct: 266 ECRFFMNTGTCKYGDDCKYSHPKERLL 292
>At3g12680 floral homeotic protein HUA1 (HUA1)
Length = 341
Score = 57.4 bits (137), Expect = 1e-09
Identities = 20/30 (66%), Positives = 25/30 (82%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
YPE PGEPDC YYI+T C++G+ C+FNHP
Sbjct: 39 YPERPGEPDCPYYIKTQRCKYGSKCKFNHP 68
Score = 55.8 bits (133), Expect = 4e-09
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 2 WQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+Q +P+ + S YP+ PG+ +C YY++TG C+FG C+F+HP +R
Sbjct: 219 YQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADR 266
Score = 52.8 bits (125), Expect = 3e-08
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 3 QMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPP 47
Q +P+ + YP G +C YY++TG C++GATC+F+HPP
Sbjct: 273 QAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPP 317
Score = 50.8 bits (120), Expect = 1e-07
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 10 ETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
ET +S PE P EP C++Y++TG C+FG +C+F+HP + +L
Sbjct: 77 ETQDS--LPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQL 116
Score = 50.1 bits (118), Expect = 2e-07
Identities = 19/43 (44%), Positives = 28/43 (64%)
Query: 4 MSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
++ P+ S P GE DC +Y++TG C++GATCR+NHP
Sbjct: 141 VTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 183
Score = 28.9 bits (63), Expect = 0.52
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 30 IRTGLCRFGATCRFNHP 46
++T C+FG +CRF+HP
Sbjct: 1 MQTRTCKFGESCRFDHP 17
>At5g63260 unknown protein
Length = 435
Score = 55.8 bits (133), Expect = 4e-09
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
YP P DCS+Y+RTG C++G++C+FNHP RKL
Sbjct: 98 YPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKL 132
Score = 50.4 bits (119), Expect = 2e-07
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE P +P+C+YY++TG C+F C+++HP NR
Sbjct: 331 FPERPDQPECTYYLKTGDCKFKYKCKYHHPKNR 363
Score = 47.8 bits (112), Expect = 1e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PGE +C +Y+R G C+FG+ C+FNHP
Sbjct: 192 PIRPGEKECPFYMRNGSCKFGSDCKFNHP 220
Score = 40.0 bits (92), Expect = 2e-04
Identities = 14/27 (51%), Positives = 20/27 (73%)
Query: 19 EHPGEPDCSYYIRTGLCRFGATCRFNH 45
E+P +C YY RTG C++G +CRF+H
Sbjct: 147 ENPKLMECKYYFRTGGCKYGESCRFSH 173
Score = 38.5 bits (88), Expect = 6e-04
Identities = 15/32 (46%), Positives = 21/32 (64%), Gaps = 2/32 (6%)
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNH--PP 47
P P + C++Y R G+C+FG CRF+H PP
Sbjct: 378 PLRPDQSMCTHYSRYGICKFGPACRFDHSIPP 409
>At1g29600 zinc finger protein, putative
Length = 287
Score = 46.6 bits (109), Expect = 2e-06
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 14 SGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
S YP PGE +C +Y++ LC +G+ C +NHPP +++
Sbjct: 125 SSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHPPLQEI 162
>At3g51120 putative protein
Length = 1247
Score = 32.3 bits (72), Expect = 0.047
Identities = 16/35 (45%), Positives = 20/35 (56%), Gaps = 3/35 (8%)
Query: 14 SGPYPEHP--GEPDCSYYIRTGLCRFGATCRFNHP 46
SG Y HP G C +Y +G C+ GA+C F HP
Sbjct: 1214 SGSYAAHPPKGLKICKFY-ESGYCKRGASCSFWHP 1247
>At3g51950 unknown protein
Length = 540
Score = 30.0 bits (66), Expect = 0.23
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 22 GEPDCSYYIRTGLCRFGATCRFNH 45
G CSY+ R G C+ GA+CRF H
Sbjct: 150 GGVPCSYFAR-GFCKNGASCRFVH 172
>At2g35430 hypothetical protein
Length = 180
Score = 29.3 bits (64), Expect = 0.39
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 26 CSYYIRTGLCRFGATCRFNHPPNRK 50
C+ + TG C FG+ C F H P+ K
Sbjct: 149 CNKWQTTGYCPFGSHCHFAHGPSGK 173
>At1g10320 unknown protein
Length = 757
Score = 29.3 bits (64), Expect = 0.39
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 26 CSYYIRTGLCRFGATC-RFNHPPNR 49
C ++++TG CRFG C R + PN+
Sbjct: 246 CPFHLKTGACRFGQRCSRVHFYPNK 270
>At5g06420 unknown protein
Length = 378
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y TG C +G +C+F H
Sbjct: 237 QPDICKDYKETGYCGYGDSCKFLH 260
>At1g01350 unknown protein (At1g01350/F6F3_27)
Length = 343
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 23 EPD-CSYYIRTGLCRFGATCRFNH 45
+PD C Y TG C +G +C+F H
Sbjct: 202 QPDICKDYKETGYCGYGDSCKFLH 225
>At2g47680 putative ATP-dependent RNA helicase A
Length = 1015
Score = 27.3 bits (59), Expect = 1.5
Identities = 12/34 (35%), Positives = 16/34 (46%), Gaps = 1/34 (2%)
Query: 12 MESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNH 45
+E Y E+ P C Y++ G C G C F H
Sbjct: 719 LEPEDYVEYGEAPVCVYFLN-GYCNRGGQCTFTH 751
Score = 26.2 bits (56), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 24 PDCSYYIRTGLCRFGATCRFNHPPNRK 50
P C ++ + CR G +C F+H R+
Sbjct: 758 PACKFFASSQGCRNGESCLFSHAMRRR 784
>At1g21570 glycine-rich RNA-binding protein grp1a, putative
Length = 658
Score = 26.9 bits (58), Expect = 2.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 25 DCSYYIRTGLCRFGATCRFNHPPNR 49
+C + TG C G C+ +HP N+
Sbjct: 366 NCPVFEATGSCSQGLKCKLHHPKNQ 390
Score = 25.8 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 24 PDCSYYIRTGLCRFGATCRFNH 45
PDCSYY++ GLC C + H
Sbjct: 320 PDCSYYLQ-GLCN-NEACPYRH 339
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.140 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,516,786
Number of Sequences: 26719
Number of extensions: 46656
Number of successful extensions: 166
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 76
length of query: 52
length of database: 11,318,596
effective HSP length: 28
effective length of query: 24
effective length of database: 10,570,464
effective search space: 253691136
effective search space used: 253691136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148289.9