BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.15 + phase: 0 /pseudo
         (273 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g32590 hypothetical protein, 5' partial                             31  0.62
At4g04600 putative polyprotein                                         28  4.0
At5g16280 putative protein                                             28  5.3

>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 1/42 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKW 46
            ++Q+KY  E+ ++K+ M+ CNS+ NP     KL +     ++
Sbjct: 1030 INQRKYAAEI-IKKYGMEGCNSVKNPIVPGQKLTKAGAVSRY 1070


>At4g04600 putative polyprotein
          Length = 922

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 2   SMVMHQQKYIGELMLEKFEMKDCNSISNPSETNSKL--VECSEEEKWNQLCLDKLLVH*G 59
           ++ + Q KY+ E ++++F M D   +S P   + KL  V  ++E    ++C     V   
Sbjct: 733 TLCLSQSKYL-EKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSAVGSV 791

Query: 60  TYAIVG 65
            YA++G
Sbjct: 792 MYAMIG 797


>At5g16280 putative protein
          Length = 1265

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 9   KYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQLCLDKLLVH*GT-YAIVG 65
           KY   L+L     K+CN +++   T    +   +   W+ +  D L  H G  YAIVG
Sbjct: 462 KYGFHLVLSGDHYKNCNQVNHAIRTYKSAISVYKSTTWSHI-KDHLYFHIGQWYAIVG 518


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.358    0.156    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,999,278
Number of Sequences: 26719
Number of extensions: 164969
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 11,318,596
effective HSP length: 98
effective length of query: 175
effective length of database: 8,700,134
effective search space: 1522523450
effective search space used: 1522523450
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 59 (27.3 bits)