BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.13 - phase: 0
(2306 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 771 0.0
At3g31530 hypothetical protein 469 e-132
At2g15410 putative retroelement pol polyprotein 403 e-112
At2g13330 F14O4.9 377 e-104
At2g14400 putative retroelement pol polyprotein 323 7e-88
At2g15100 putative retroelement pol polyprotein 300 5e-81
At2g14380 putative retroelement pol polyprotein 295 2e-79
At2g11940 putative retroelement gag/pol polyprotein 290 5e-78
At1g37200 hypothetical protein 290 9e-78
At2g10780 pseudogene 276 1e-73
At4g10580 putative reverse-transcriptase -like protein 275 2e-73
At4g03800 272 1e-72
At2g04670 putative retroelement pol polyprotein 270 7e-72
At1g37060 Athila retroelment ORF 1, putative 261 3e-69
At2g14650 putative retroelement pol polyprotein 256 1e-67
At2g07660 putative retroelement pol polyprotein 254 4e-67
At3g11970 hypothetical protein 248 3e-65
At1g36590 hypothetical protein 248 3e-65
At1g35370 hypothetical protein 235 3e-61
At2g14040 putative retroelement pol polyprotein 229 1e-59
>At1g20390 hypothetical protein
Length = 1791
Score = 771 bits (1992), Expect = 0.0
Identities = 438/1117 (39%), Positives = 638/1117 (56%), Gaps = 57/1117 (5%)
Query: 1208 EVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPL 1267
E++N+ + + + VGA + S++ ++I LLK FAWS +DM G+D I H L +
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 1268 KPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMC 1327
P PVKQK R+ P+ A + EEV+K + AG +I YP+WLAN V V KK+GK R+C
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 1328 VDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITP 1387
VDY DLNKA PKD +PLPHID LV++T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 1388 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKM 1447
GT+CYKVM FGL NAGATYQR + + D I + +EVY+DDM+VKS+ EDHV++L K
Sbjct: 892 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951
Query: 1448 FQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGF 1507
F L Y ++LNP KCTFGV SG+ LG++V+++GIE +P +++AI E+P+PR +EV+
Sbjct: 952 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1011
Query: 1508 LGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEG 1567
GR+ ++RFIS T C P + LL++ W +D ++AF+ +K YL PPIL+ P G
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071
Query: 1568 RPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAK 1627
L +Y+ V ++++ VL ++D ++ I+Y SK E E+RY ++EK A+ +A+
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1129
Query: 1628 RLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILAD 1687
+LR Y +HT +++ P++ P+ +GR+ +W + LSEYDI+ R + A+K +LAD
Sbjct: 1130 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1188
Query: 1688 HLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGI 1747
L PL+ EE W L DG+ + G+GI
Sbjct: 1189 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1225
Query: 1748 GAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQI 1807
G L++P + + RLRF TNN+AEYE I G+ A ++I I + DS L+ Q+
Sbjct: 1226 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1285
Query: 1808 KGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDV- 1866
G++E + + Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1286 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1341
Query: 1867 PLISVKFLDRPAY--VFAAEVV-----------FDDKPWFHDIKVFLQTREYPPGASNKD 1913
+I V+ +D+P+ A E+V D W +I+ +L P D
Sbjct: 1342 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----SD 1396
Query: 1914 KKTLRRL---SSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTM 1970
K T RRL ++ + L + L K + +L C+ E + ++ E HEG+ G H G +
Sbjct: 1397 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1456
Query: 1971 AKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIG 2030
A K+ + G+YW TM SDC T KC +CQ +A IH P L +P+PF W +D++G
Sbjct: 1457 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1516
Query: 2031 RIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNG 2090
+ AS RFILV DYFTKWVEA SYA + V F+ IICR+G+P IITDNG
Sbjct: 1517 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1574
Query: 2091 TNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKD-WHEMLP 2149
+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1575 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1634
Query: 2150 FALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLN 2209
L YRT+ R++T TPF+ YGMEA+ P EV SLR M E + D+L+
Sbjct: 1635 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1693
Query: 2210 LIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNYE 2268
+EE R ALC Q YQ + +++KV R F GDLVL+K+F + + GK N+E
Sbjct: 1694 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1753
Query: 2269 GPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYF 2305
G Y V + G L TM G +PR N+ +K+Y+
Sbjct: 1754 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790
Score = 80.1 bits (196), Expect = 1e-14
Identities = 44/138 (31%), Positives = 72/138 (51%)
Query: 878 LSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLR 937
+SF+D +L HN L + + ++ VL+DTGSS++++ K T + ++
Sbjct: 553 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 612
Query: 938 RSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVT 997
+ FDG +G + LPI VG + V F V+ A Y+ +LG PWIH+ A+
Sbjct: 613 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 672
Query: 998 STLHQKLKFVKNGKLVTV 1015
ST HQ +KF + + T+
Sbjct: 673 STYHQCVKFPTHNGIFTL 690
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 208 SVQVPHKFKIPDFEKYKGSSCPEEHLKMY---VRRMPAYAQD-DQILIYYFQESLTGPAS 263
S++ K K+ E Y G + P+E L + + R + D F E LTGPA
Sbjct: 165 SIRGAQKIKL---ESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAH 221
Query: 264 KWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWR 320
W++ L I +F L +F++ Y+ ++ +DL +++QG KE+ + + R++
Sbjct: 222 NWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFK 278
>At3g31530 hypothetical protein
Length = 831
Score = 469 bits (1208), Expect = e-132
Identities = 292/868 (33%), Positives = 454/868 (51%), Gaps = 134/868 (15%)
Query: 1361 SFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIH 1420
S+ ++ + + M PED+EKT+F T G FCY+VMPFGL NAGATY+R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 1421 KEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 1480
K +EVY+DDM+VKS+TE+DH+ +L++ F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 1481 GIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVW 1540
GIE +P +++A+ M +P+ ++EV+ GR+ ++RFIS T C + +LR+ + W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 1541 TEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYY 1600
T C++AF +KKYL PPIL PV G P +Y+ V + ++ L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 1601 LSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRI 1660
+S+ FT ESRY +EK A+ +A++LR Y +H+ ++ M P++ I P+ +GR+
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 1661 ARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEP 1720
A+W + LSEYDIE +++ K +LAD + P ++ R + P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 1721 LFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACI 1780
L D+ W L DG+ + G+G+G L +P G + TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 1781 MGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHI 1840
G+ A L+I + DS L+ NQ G++ T + Y + + L F++ EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 1841 PRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPA-------YVFAAEVVFD-DKP- 1891
PR EN ADALA L+S + +P V+F+++P+ +V ++ D D P
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIP---VEFIEKPSIELGKEEHVLPIQISADQDDPD 568
Query: 1892 -----WFHDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDTVLLRCVD 1945
W I ++ + P S+K K + L+ ++ F L LYK L+ CV+
Sbjct: 569 DCNSEWMEPIISYISEGKLP---SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVE 625
Query: 1946 KYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKI 2005
++ EIH GS +A I
Sbjct: 626 AEAICKIMKEIHSGS----------------------------------------HAPTI 645
Query: 2006 HMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQ 2065
H P L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA SYA++
Sbjct: 646 HQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDA 703
Query: 2066 VVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEA 2125
V F+ HI+CR+GIP I+TDNG+ + + CD + I S+P PQ NG EA
Sbjct: 704 QVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEA 763
Query: 2126 ANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIP 2185
AN+ L L +RT+ R +T TPF+ +YG E V+P E+ +P
Sbjct: 764 ANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVP 804
Query: 2186 SLRVLMEADLSEAEWVQNRYDQLNLIEE 2213
SLR + + ++ + Q D+L+LI+E
Sbjct: 805 SLRRSLSPE-NDPDNTQTPLDELDLIDE 831
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/53 (35%), Positives = 29/53 (53%)
Query: 954 LGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKF 1006
LG + LP+ V+F + D Y+ ++G PW+++ AV ST H LKF
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 403 bits (1036), Expect = e-112
Identities = 197/472 (41%), Positives = 301/472 (63%), Gaps = 23/472 (4%)
Query: 1210 INLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKP 1269
+N+ + + + + L + ++ +++ L++ FAWS +DMPG+D+ + H L + P
Sbjct: 719 VNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDP 778
Query: 1270 ECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVD 1329
P+KQK R+ PD + EEV+K +DAG ++ YP WL N V V KK+GK R+C+D
Sbjct: 779 TYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCID 838
Query: 1330 YRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWG 1389
+ DLNKA PKD FPLPHID LV++TA +++ SFMD FSGYNQI M DREKT FIT G
Sbjct: 839 FTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQG 898
Query: 1390 TFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQ 1449
T+CYKVMPFGL NAGATY R + +F D + +EVY+DDM+VKS+ E+H+ +L++ FQ
Sbjct: 899 TYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQ 958
Query: 1450 RLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLG 1509
L +Y ++LNP+KCTFGV SG+ LG++V+++GIE +P ++ AI ++P+PR +EV+ +G
Sbjct: 959 VLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIG 1018
Query: 1510 RLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRP 1569
R+ ++RFIS T C P ++LLR + W E C+ EG
Sbjct: 1019 RIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCE--------------------EGET 1058
Query: 1570 LIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRL 1629
L +Y+ V +++ VL ++D ++H I+Y+SK E RY LEK A+ +A++L
Sbjct: 1059 LYLYIAVSTSAVSGVLVREDR--GEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKL 1116
Query: 1630 RHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIK 1681
R Y ++T +++ P++ I P+ +GR+A+W + LSEYDI +++ K
Sbjct: 1117 RPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
Score = 282 bits (722), Expect = 1e-75
Identities = 164/422 (38%), Positives = 234/422 (54%), Gaps = 19/422 (4%)
Query: 1892 WFHDIKVFLQTREYPPGASNKDKKTLRRL---SSNFFLNGDILYKRNFDTVLLRCVDKYE 1948
W +I+ ++ R P KDK RRL S+ + L + L + + VLL C+D E
Sbjct: 1376 WIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEE 1430
Query: 1949 ADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMP 2008
A ++ EIHEG+ G H G +A KI + G YW TM +DC K +C KCQ +A IH+P
Sbjct: 1431 AQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIP 1490
Query: 2009 PTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVV 2068
L P+PF W +D+I AS ++ILV DYFTKW EA SYA + + V
Sbjct: 1491 SEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARIQSKEVQ 1548
Query: 2069 KFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANK 2128
F+ +IIC +G+P I+TDNGT + + C +KI S+P PQ NG EA NK
Sbjct: 1549 NFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNK 1608
Query: 2129 NIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
I ++K + K W + L L YRT+ R ST TPFSL YGMEA+ P E +P++
Sbjct: 1609 TILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTV 1668
Query: 2188 R---VLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKE 2244
R ++ + L++ Q D L+ +EE+R AL Q YQ+ + ++KKV+ R F E
Sbjct: 1669 RRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAE 1724
Query: 2245 GDLVLKKIF-SFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKK 2303
GDLVL+K+F + GK ++EGPY++ + G L TMDG +PR N+ +K+
Sbjct: 1725 GDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKR 1784
Query: 2304 YF 2305
Y+
Sbjct: 1785 YY 1786
Score = 68.9 bits (167), Expect = 3e-11
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 1766 RFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYA 1825
RF +NN AEYEA I G+ A + +K I+ Y DS LV +Q G +E + + Y
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248
Query: 1826 RRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPA 1878
R L F EL IPR +N ADALA L+S + +P V+ +D P+
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIP---VECIDVPS 1298
Score = 38.5 bits (88), Expect = 0.046
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 254 FQESLTGPASKWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFK 313
F + L+G A W++ L+ I + L +F++ Y ++ DL M Q KE+ +
Sbjct: 293 FVKHLSGAALTWFSRLEANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLR 352
Query: 314 EYAQRWRDTAAQVS 327
+ R+++ V+
Sbjct: 353 SFIGRFKEIVTSVA 366
>At2g13330 F14O4.9
Length = 889
Score = 377 bits (969), Expect = e-104
Identities = 209/538 (38%), Positives = 304/538 (55%), Gaps = 59/538 (10%)
Query: 1319 KKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPED 1378
+K+GK R+C+D+RDLNKA PKD FPLPHID LV++T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 1379 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEE 1438
+EKT+FIT GT+ YKVMPFGL NAG TYQR + +F D + K IEVY+DDM+VKS E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 1439 DHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAP 1498
DHV L++ F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 1499 RTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEP 1558
+ +EV+ GR+ ++ FIS C P ++ LRK + W +DC++AF +K YL EP
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 1559 PILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKT 1618
PIL P +G PL +Y T + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 1619 CCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQK 1678
+ + ++LR Y +H +V PI+ I +GR+A+W + L EYDIE R++
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 1679 AIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDG 1738
++K +LAD + PL D +G + + W L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 1739 AVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYG 1798
+ N G+G+G L +P G I + +L F+ +NN +EYEA I GI+ A + I+ I Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 1799 DSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSS 1856
DS LV +Q G++E + Y + + L F +L IPR EN AD LA L+S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 74.3 bits (181), Expect = 8e-13
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 876 NNLSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAP 935
+ ++F + E+ + H+ AL I ++ LS ++VDTGSS++VL + + + +
Sbjct: 45 DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104
Query: 936 LRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQV-NFQVMDIQASYSCLLGRPWIHEAG 994
L+ + F G +G + LP T+ V Q+ NF V+D +A ++ +LGRPW+H
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLP-TIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMK 163
Query: 995 AVTSTLHQKLKFVKNGKLVTVNGEE 1019
AV ST HQ +KF + V G +
Sbjct: 164 AVPSTYHQCIKFPSYKGIAVVYGSQ 188
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 323 bits (828), Expect = 7e-88
Identities = 160/355 (45%), Positives = 236/355 (66%), Gaps = 2/355 (0%)
Query: 1279 RRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASP 1338
R+ + A + +EV K + G + YP WLAN V V KK+GK R+C+D+ DLNKA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 1339 KDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPF 1398
KD FPLPHID LV+STA +++ SFMD FSGYNQI M PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 1399 GLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRL 1458
GL NAGATY R + +F + + K +EVY+DDM++KS+ +EDHVK+L++ F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 1459 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFI 1518
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ KEV+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 1519 SHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLE 1578
S T P +++L+ + +W E C++AF +K YL PP+L P L +Y++V
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 1579 NSMGCVLGQQDETGRKEHAIYYLSKKFT-ECESRYSMLEKTCCALAWAAKRLRHY 1632
+++ VL ++D G ++ Y + +F + E++ S +E + AK R +
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Score = 220 bits (561), Expect = 7e-57
Identities = 166/542 (30%), Positives = 255/542 (46%), Gaps = 96/542 (17%)
Query: 1802 LVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLS--SMIK 1859
+++NQ G +E + + Y + L F K EL IPR +N ADALA L+ S +
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1860 VNHHNDVPLISVKFL--DRPAYVFA-AEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKT 1916
VN V IS + + ++ A+V + D+ D V E PP K K+
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRG---DTAV-----ELPPVKRRKSKEA 901
Query: 1917 ---------------LRRLSSNFFLNGDI----------------------LYKRNFDTV 1939
+ + S+ + + LY+R
Sbjct: 902 TVPKPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDP 961
Query: 1940 LLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQ 1999
L + ++++ E+HEG G H +G MA KI + YYW TM +DC K+ ++C +CQ
Sbjct: 962 YLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQ 1021
Query: 2000 IYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 2059
++A IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1022 LHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA- 1079
Query: 2060 ANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQM 2119
I+ +GI K+ + S+ PQ
Sbjct: 1080 ---------------ILLNWGI------------------------KVSY--STLRYPQG 1098
Query: 2120 NGAVEAANKNIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVL 2178
NG EAANK I ++K + K W++ L L YRT+ R STG TPFSLVYGM+AV+
Sbjct: 1099 NGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVV 1158
Query: 2179 PVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVR 2238
P E+ +P LR EA L+E E D L+ I E+R AL Q YQ + ++ KV+
Sbjct: 1159 PAELNVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVK 1217
Query: 2239 PREFKEGDLVLKKIF-SFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVN 2297
R F GD VLK++F + + + GK N+EGPY+V G L+ ++ + RP N
Sbjct: 1218 SRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWN 1277
Query: 2298 TD 2299
+
Sbjct: 1278 VN 1279
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/124 (25%), Positives = 61/124 (48%), Gaps = 4/124 (3%)
Query: 219 DFEKYKGSSCPEEHLKMYV----RRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTRI 274
+ E Y G P+ +L ++ R A +D F E+L G A W+T L+ I
Sbjct: 161 NLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSI 220
Query: 275 QTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKE 334
F +L F++QYS +D + +DL ++QG ET + + +++ +++S ++
Sbjct: 221 SNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLSRISQQSA 280
Query: 335 MTKL 338
++ L
Sbjct: 281 LSAL 284
Score = 34.7 bits (78), Expect = 0.67
Identities = 16/62 (25%), Positives = 37/62 (58%)
Query: 877 NLSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPL 936
++ F ++E R+H+ AL ++++ +S +L+DTGSS++++ +T ++ A +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467
Query: 937 RR 938
R
Sbjct: 468 NR 469
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 300 bits (769), Expect = 5e-81
Identities = 215/778 (27%), Positives = 370/778 (46%), Gaps = 82/778 (10%)
Query: 1536 QGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKE 1595
+G +W E C++AF +K+YL EP +L G L +Y+ V E++ V G Q R +
Sbjct: 627 KGFIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESA---VTGVQVRVERSD 683
Query: 1596 -HAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKP 1654
I+Y+ ++RY M+EK A+ AA++LR Y +H +++ + P++ I P
Sbjct: 684 KRPIFYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSP 735
Query: 1655 ALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKM 1714
+GR+ +W + LSE+D+E R++ ++ ++ ++ F + +
Sbjct: 736 TQSGRLGKWAIELSEFDLEFRARTSLNSTMDTSR------------QWGFIKTWVRSRNL 783
Query: 1715 KDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIA 1774
D G D + Y N + V G F N+ A
Sbjct: 784 SDAPTANRYSGEYEAK------DACMEAYLNLVREV----SGRFEQFELTRIPRAENSAA 833
Query: 1775 EYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNK 1834
A + E R+ +E ++ +++I + R RRL +
Sbjct: 834 NALAALASTFEVTLPRVIPVETISQPSIRLDEI---------SFVTTRAMRRRLDAQSAE 884
Query: 1835 VELHHIPRDENQMADAL----ATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAEVVFDDK 1890
LH + DE +++DA+ + + NH+ +P D+P + + A+
Sbjct: 885 NGLHQLGDDE-EISDAVHPTEIVENQSLPDNHNAPLP-------DQPPHDWGAD------ 930
Query: 1891 PWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEAD 1950
W I+ ++ P A + L+ + F + DILY+R F C+ +
Sbjct: 931 -WREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTR 987
Query: 1951 LLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPT 2010
++ E+H+G+ G H G ++A K+ + GYYW T+ +DC + RKC +CQ +A I P
Sbjct: 988 TVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAE 1047
Query: 2011 TLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKF 2070
L +S+P+PF W +D++G + T+ VEAA+Y+N+T V F
Sbjct: 1048 LLTTVSAPYPFMKWLMDIVGPLHVS---------------TRGVEAAAYSNITHVQVWNF 1092
Query: 2071 IKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI 2130
I IICR+G+P I+TDNG+ ++ + C++++I +S+P PQ NG EA NK I
Sbjct: 1093 IWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTI 1152
Query: 2131 KRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRV 2189
++K + YK W L L RT+ R +T TPFSL+YGMEAV+P E+++PS R
Sbjct: 1153 ISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARR 1212
Query: 2190 LMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVL 2249
+ +E E + D ++ I+E+R AL Q Y + ++ VR R F+ G LVL
Sbjct: 1213 IRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVL 1271
Query: 2250 KKIFSFQPD-SRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKYFV 2306
+++ + + GK ++EGPY + G L M+G+ + R N+ +K++++
Sbjct: 1272 RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFYI 1329
Score = 172 bits (437), Expect = 2e-42
Identities = 86/151 (56%), Positives = 106/151 (69%)
Query: 1253 MPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLA 1312
M G+ T+++ H L + P PVKQK R+ PD A + EV + ++ G + YP+WLA
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 1313 NIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQI 1372
N V V KK+GK R+CVD+ DLNKA KD FPLPHID LV+ST ++ SFMD FSGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 1373 KMAPEDREKTSFITPWGTFCYKVMPFGLINA 1403
M PED+EKTSFIT GT+ YKVMPFGL NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 54.7 bits (130), Expect = 6e-07
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 954 LGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKF-VKNGKL 1012
LG VVLP+T V V F V D A+Y+ +LG PW++E V ST HQ +KF GK+
Sbjct: 353 LGTVVLPVTAQGVVKMVEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKM 412
Query: 1013 VTVNGEEALLVSH 1025
++ E ++SH
Sbjct: 413 TGISTE---VISH 422
Score = 49.7 bits (117), Expect = 2e-05
Identities = 33/108 (30%), Positives = 51/108 (46%), Gaps = 7/108 (6%)
Query: 215 FKIPDFEKYKGSSCPEEHLKMY---VRRMPAYA-QDDQILIYYFQESLTGPASKWYTNLD 270
FK+P Y G +EHL + R+P ++D L F E+L G A W+T L+
Sbjct: 173 FKLP---VYNGKGDLKEHLTSFQVIAGRVPLEPHEEDAGLCKLFSENLFGLALTWFTQLE 229
Query: 271 KTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQR 318
+ I F+ L AF++QY Y ++ + L +Q E + Y R
Sbjct: 230 EGSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPLRTYIYR 277
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 295 bits (756), Expect = 2e-79
Identities = 139/282 (49%), Positives = 197/282 (69%)
Query: 1252 DMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWL 1311
DM G+D ++ H L + P VKQK R+ P+ + + +EV K +DAG ++ YP+WL
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 1312 ANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQ 1371
AN V V KK+ K R+C+D+ DLNKA PKD FPLPHID +V++T +++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 1372 IKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMI 1431
I M +D+EKTSFI GT+CYKVMPFGL N GA YQR + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 1432 VKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKA 1491
VKS DH+ +L+ F+ L KY ++LNP KC FGV SG+ LG+IV+++GIE +P +++A
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 1492 IREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLR 1533
I ++ +PR +KEV+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 77.4 bits (189), Expect = 9e-14
Identities = 44/144 (30%), Positives = 74/144 (50%)
Query: 878 LSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLR 937
L+F+ E+L HN L I ++ ++ +L+DTGSS+NV+ K ++ ++
Sbjct: 330 LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389
Query: 938 RSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVT 997
S + FDG+ G + LPI +G F V+D Y+ +LG PWIH+ A+
Sbjct: 390 PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449
Query: 998 STLHQKLKFVKNGKLVTVNGEEAL 1021
S+ HQ +K + + T+ G + L
Sbjct: 450 SSYHQCIKIPTSIGIETIRGNQNL 473
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 290 bits (743), Expect = 5e-78
Identities = 178/534 (33%), Positives = 272/534 (50%), Gaps = 99/534 (18%)
Query: 1175 YEAEEEENEEIPDEISRLLEQEKKTIQPYGDE----LEVINL---------GTKEDKKEI 1221
YEA E E P E+ +P+ D L++ N G+ D +
Sbjct: 291 YEALESEKTSPPPRTRSKKEETSYLDKPHDDAFVITLDIANCKVQRVLIVTGSSVDLIFL 350
Query: 1222 KVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRT 1281
A+L + ++++I+ L++ FAW+ ++M G+ T+++ H L + P PVKQK ++
Sbjct: 351 DTLANLGQNFRRELIQFLEKNKSTFAWTIREMTGISTEVISHELNVDPTFKPVKQKRQKH 410
Query: 1282 RPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDD 1341
PD A + +V + + A D
Sbjct: 411 GPDRAEAVNVKVVRLLKA----------------------------------------DC 430
Query: 1342 FPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLI 1401
FPLPHID ++ST ++ SFMD FSGYNQI M P+D+EKTSFIT GT+ YKVMPFGL
Sbjct: 431 FPLPHIDRPIESTTGQEMLSFMDAFSGYNQIMMNPDDQEKTSFITERGTYYYKVMPFGLK 490
Query: 1402 NAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPN 1461
N GATYQ + +F D++ K +EVY+DDM+VK+ H+ + Q+ F L ++ ++LNP
Sbjct: 491 NVGATYQLLVNIMFKDLLGKTMEVYIDDMLVKTAFSASHLDHFQQCFDILNEFGMKLNPL 550
Query: 1462 KCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHM 1521
KCTF V S + LGFI S
Sbjct: 551 KCTFAVPSREFLGFI------------------------------------------SRS 568
Query: 1522 TATCGPIFKLLRK-EQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENS 1580
T C P LLRK +G VW E C++AF +K YL EP +L P G L +Y++V EN+
Sbjct: 569 TDKCLPFCTLLRKVNKGFVWDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENA 628
Query: 1581 MGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWL 1640
+ VL + + + E I+Y+SK F++ E+RY M+EK A+ AA++LR Y +H +
Sbjct: 629 ISGVLVRVERS--DERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVV 686
Query: 1641 VSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPL 1694
++ + P++ I P +GR+A+W + LSE+++E ++ ++K +LAD L PL
Sbjct: 687 LTSL-PLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739
Score = 157 bits (396), Expect = 9e-38
Identities = 144/552 (26%), Positives = 226/552 (40%), Gaps = 125/552 (22%)
Query: 1801 ALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKV 1860
A + G +E + Y D R L F K EL +PR EN ADALA L+S ++
Sbjct: 740 ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799
Query: 1861 NHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPP------------- 1907
+ISV+ + +P + E+ F + ++V E
Sbjct: 800 TVRR---IISVETIAQPN-IRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPL 855
Query: 1908 -----------------------------GASNKDKKTLRRLSSN---FFLNGDILYKRN 1935
G DK R+L + F L DILY+R
Sbjct: 856 VADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADDILYRRI 915
Query: 1936 FDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKC 1995
C+ + +I EIH+G+ G H G ++A K+ + GY+W TM +DC
Sbjct: 916 ISAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADC------- 968
Query: 1996 HKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE 2055
+ YA H T + SP PF W +D++G + ++ G RF+L+ +WVE
Sbjct: 969 ---EAYA---HRSRRTFHFGISPLPFMKWSMDIVGPLHV-STRGVRFLLL------EWVE 1015
Query: 2056 AASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPY 2115
AA+Y+ +T+ V FI IICR+G+P I+TDNG ++ K +++I + S+P
Sbjct: 1016 AAAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPR 1075
Query: 2116 RPQMNGAVEAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME 2175
PQ G VEA
Sbjct: 1076 YPQ--GNVEA-------------------------------------------------- 1083
Query: 2176 AVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDK 2235
V+P E+++P R + +EA + D ++ I+E+R AL Q Y Q ++
Sbjct: 1084 -VIPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNS 1141
Query: 2236 KVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPR 2294
VR R F G LVL++I + GK ++EGPY + G L M+G+ + R
Sbjct: 1142 NVRSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNGD-CLINMEGKTVRR 1200
Query: 2295 PVNTDAVKKYFV 2306
N +K++++
Sbjct: 1201 AWNAAHLKRFYI 1212
>At1g37200 hypothetical protein
Length = 1564
Score = 290 bits (741), Expect = 9e-78
Identities = 138/316 (43%), Positives = 207/316 (64%), Gaps = 4/316 (1%)
Query: 1188 EISRLLEQEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFA 1247
E+ + + P + + + + K+ + VG L+ ++++ I LKE D FA
Sbjct: 600 EMKTVRSSDPSQCGPQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFA 659
Query: 1248 WSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNY 1307
WS ++ G+ ++ H L + P P+KQK R+ P+ A +++EV + + G + Y
Sbjct: 660 WSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKY 719
Query: 1308 PQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFS 1367
P WLAN V V K+GK R+C+D+ DLNKA PKD FPLPHID LV +TA ++ SFMD FS
Sbjct: 720 PDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFS 779
Query: 1368 GYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYV 1427
GYNQI M P+D+EKT+FIT CYKVMPFGL N GATYQR + +F D + K +E+Y+
Sbjct: 780 GYNQILMRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYI 835
Query: 1428 DDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1487
DDM+VKS E+DH+ L++ F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P
Sbjct: 836 DDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPK 895
Query: 1488 KVKAIREMPAPRTEKE 1503
++ A +MP+P+ ++
Sbjct: 896 QIAAFIDMPSPKMARD 911
Score = 226 bits (577), Expect = 9e-59
Identities = 166/581 (28%), Positives = 264/581 (44%), Gaps = 97/581 (16%)
Query: 1589 DETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIK 1648
D G+K IYY+SK + E+ Y +EK A+ +A++LR Y+ +H +V PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1649 YIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEE 1708
I + R+A+W + LSEYDIE R++ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1709 IMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFD 1768
+G + + W L DG+ N G+G G L +P G I + RL F+
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1769 CTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRL 1828
+NN +EYEA I GI+ A +RI++I + DS LV +Q G++E + Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1829 LTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPL-------------------- 1868
F EL IPR EN DALA L+S + +P+
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETS 1197
Query: 1869 -------------ISVKFLDRPAYVFAAE-----------VVFDDKP---WFHDIKVFLQ 1901
+ + L A AAE ++ +P W I +++
Sbjct: 1198 ATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIE 1257
Query: 1902 TREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSF 1961
PP + + L+ S+ + + L KR+ + C + L+ +HEG
Sbjct: 1258 RGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQC 1315
Query: 1962 GIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPF 2021
G H +G T+ M +DC H+ +C KCQ +A +H PP ++ +SSP+PF
Sbjct: 1316 GSHYSGRTLR----------CIMLADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPF 1365
Query: 2022 SMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICR 2078
W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+ +I+ R
Sbjct: 1366 MKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYR 1423
Query: 2079 YGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQM 2119
+GIP I+TDNG + K F ++ P+ P +
Sbjct: 1424 HGIPYEIVTDNGLTSPREKSKH----FATSGRSALPHPPPL 1460
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/98 (32%), Positives = 53/98 (53%), Gaps = 2/98 (2%)
Query: 2209 NLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNY 2267
+ I+E+R A+ Q YQ+ + ++ ++ R F+ G+LVL+K+FS + + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 2268 EGPYVVKRAFSGGAMTL-QTMDGEELPRPVNTDAVKKY 2304
EGPY + G L + +G RP N +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
Score = 40.0 bits (92), Expect = 0.016
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 978 QASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEE 1019
+A ++ +LGRPW+H AV ST HQ +KF + + G +
Sbjct: 529 KAPFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYGSQ 570
>At2g10780 pseudogene
Length = 1611
Score = 276 bits (706), Expect = 1e-73
Identities = 163/492 (33%), Positives = 270/492 (54%), Gaps = 21/492 (4%)
Query: 1204 GDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVH 1263
G E + + TKE VGAS E + I ++ E+ DVFA + +P +D
Sbjct: 603 GCEAYLATITTKE------VGASAEL----KDIPIVNEFSDVFA-AVSGVPPDRSDPFT- 650
Query: 1264 HLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGK 1323
+ L+P P+ + R P K+K+++++ +D GF+ S+ P W A ++ V KKDG
Sbjct: 651 -IELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGS 708
Query: 1324 VRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTS 1383
R+C+DYR LNK + K+ +PLP ID L+D ++ FS +D SGY+QI + P D KT+
Sbjct: 709 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 768
Query: 1384 FITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKY 1443
F T + F + VMPFGL NA A + + M +F D + + + ++++D++V S + E H ++
Sbjct: 769 FRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEH 828
Query: 1444 LQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKE 1503
L+ + +RLR+++L +KC+F RS LG ++S +G+ VDP+K+++I+E P PR E
Sbjct: 829 LRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATE 888
Query: 1504 VRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIP 1563
+R FLG Y RF+ + P+ +L K+ W+++C+K+F +K L P+L+
Sbjct: 889 IRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVL 948
Query: 1564 PVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALA 1623
P EG P +Y +GCVL Q K I Y S++ + E Y + A+
Sbjct: 949 PEEGEPYTVYTDASIVGLGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVV 1002
Query: 1624 WAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGS 1683
+ K R Y+ + + +KYIF +P L R RW L+++Y+++ K +
Sbjct: 1003 FFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPG-KAN 1061
Query: 1684 ILADHLAHQPLE 1695
+AD L+ + E
Sbjct: 1062 QVADALSRRRSE 1073
Score = 100 bits (250), Expect = 8e-21
Identities = 81/337 (24%), Positives = 146/337 (43%), Gaps = 22/337 (6%)
Query: 1945 DKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADK 2004
D+ + ++ E H+ F IHP + M + + R Y+W+ M+ D + KC CQ+ +
Sbjct: 1156 DRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAE 1214
Query: 2005 IHMPPTTLNLLSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE--AASYAN 2061
+P L L P W + +D + + + H + V +D TK A S +
Sbjct: 1215 HQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKD 1274
Query: 2062 VTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNG 2121
+ + K+I + I+ +GIP I++D T +K K + S+ Y PQ +
Sbjct: 1275 GAEIIAEKYI-DEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDE 1333
Query: 2122 AVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPV 2180
E + ++ +++ V+ + +W + L Y S + S G +P+ +YG P+
Sbjct: 1334 QSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL 1393
Query: 2181 EVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPR 2240
R L + + + ++ ++ L E Q R K +K+ +
Sbjct: 1394 CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYANKRRKEL 1441
Query: 2241 EFKEGDLVLKKIFSFQP----DSRGKWAPNYEGPYVV 2273
EF+ GDLV K +++ SR K +P Y GPY V
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 1478
Score = 39.7 bits (91), Expect = 0.021
Identities = 39/186 (20%), Positives = 79/186 (41%), Gaps = 23/186 (12%)
Query: 223 YKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTR---IQTFRD 279
+K + CPE++ + I +++ L G A W+ ++K R +++F D
Sbjct: 202 FKSTRCPEDYQR-------------DIAVHF----LEGDAHNWWLTVEKRRGDEVRSFAD 244
Query: 280 LCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKE-MTKL 338
+ F ++Y + QG++ T +EY + + V +EE++ +
Sbjct: 245 FEDEFNKKYFPPEAWDRLECAYLDLVQGNR-TVREYDEEFNRLRRYVGRELEEEQAQLRR 303
Query: 339 FLKTLNHFYYKKMVGSTPKSFAEMVGMGVQLEEGVREGR-LVKNTTPVSGTKKTGNHFPR 397
F++ L + T S +E+V +EEG+ E R L + P+ + T +
Sbjct: 304 FIRGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEERYLNREKAPIRNNQSTKPADKK 363
Query: 398 KKEQEV 403
+K +V
Sbjct: 364 RKFDKV 369
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 275 bits (703), Expect = 2e-73
Identities = 154/457 (33%), Positives = 256/457 (55%), Gaps = 11/457 (2%)
Query: 1236 IELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQK 1295
I +++E+ DVF S Q +P +D + L+P P+ + R P ++K++++
Sbjct: 457 IRVVQEFQDVFQ-SLQGLPPSQSDPFT--IELEPGTAPLSKAPYRMAPAEMAELKKQLKD 513
Query: 1296 QIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTA 1355
+ GF+ S P W A ++ V KKDG R+C+DYR+LN+ + K+ +PLP ID L+D
Sbjct: 514 LLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLR 572
Query: 1356 KSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLF 1415
+ FS +D SGY+QI +A D KT+F T +G F + VMPFGL NA A + R M ++F
Sbjct: 573 GATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVF 632
Query: 1416 HDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGF 1475
+ + + + +++DD++V S + E+ +L+++ ++LR+ KL +KC+F R LG
Sbjct: 633 QEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGH 692
Query: 1476 IVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKE 1535
IVS +G+ VDP+K++AIR+ P P E+R FLG Y RF+ + P+ KL K+
Sbjct: 693 IVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKD 752
Query: 1536 QGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKE 1595
VW+++C++ F S+K+ L P+L P G+P ++Y +GCVL Q +
Sbjct: 753 VPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK----- 807
Query: 1596 HAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPA 1655
I Y S++ + E Y + A+ +A K R Y+ + + +KYIF +P
Sbjct: 808 -VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPE 866
Query: 1656 LTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQ 1692
L R RW L+++YD+E K +++ D L+ +
Sbjct: 867 LNLRQRRWMELVADYDLEIAYHPG-KANVVVDALSRK 902
>At4g03800
Length = 637
Score = 272 bits (696), Expect = 1e-72
Identities = 140/337 (41%), Positives = 209/337 (61%), Gaps = 21/337 (6%)
Query: 1253 MPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLA 1312
MP +D I+ H L + P P+KQK R+ + A + ++ K + G + YP W+A
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 1313 NIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQI 1372
V V KK+GK R+C+D+ DLNKA PKD FPLPHID LV+STA +++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 1373 KMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIV 1432
M PED+EKTSFIT + GATYQ + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 1433 KSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAI 1492
KS+ +EDHVK+L + F+ L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 1493 REMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIK 1552
+ P+ R KEV+ GR+ S T P +++L+ G +W E C++AF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 1553 KYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQD 1589
YL PP+L P L +Y+ V +++ VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 76.3 bits (186), Expect = 2e-13
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 875 CNNLSFSDEELPAEGRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGA 934
C+++SF +EE R H+ AL I+++ +S +LVDTGSS++++ + G
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232
Query: 935 PLRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAG 994
P + AF LG + LP+ G V+F V D A+Y+ +LG PWI +
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287
Query: 995 AVTSTLHQKLKFVKNGKLVTVNGE 1018
AV ST HQ LKF + + T+ G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 270 bits (690), Expect = 7e-72
Identities = 161/498 (32%), Positives = 267/498 (53%), Gaps = 22/498 (4%)
Query: 1195 QEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMP 1254
Q KK I+ G E ++ + E ++ V I +++E+ DVF S Q +P
Sbjct: 453 QAKKMIEK-GCEAYLVTISMPESLGQVAVSD----------IRVIQEFEDVFQ-SLQGLP 500
Query: 1255 GLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANI 1314
+D + L+P P+ + R P ++K++++ + GF+ S P W A +
Sbjct: 501 PSRSDPFT--IELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSP-WGAPV 557
Query: 1315 VPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKM 1374
+ V KKDG R+C+DYR LN + K+ +PLP ID L+D + FS +D SGY+QI +
Sbjct: 558 LFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPI 617
Query: 1375 APEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKS 1434
A D KT+F T +G F + VMPF L NA A + R M ++F + + + + +++DD++V S
Sbjct: 618 AEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYS 677
Query: 1435 VTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIRE 1494
+ E+H +L+++ ++LR+ KL +KC+F R LG IVS +G+ VDP+K++AIR+
Sbjct: 678 KSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRD 737
Query: 1495 MPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKY 1554
P P E+R FL Y RF+ + P+ KL K+ VW+ +C++ F S+K+
Sbjct: 738 WPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEM 797
Query: 1555 LLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSM 1614
L P+L P G+P ++Y +GCVL Q+ + I Y S++ + E Y
Sbjct: 798 LTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK------VIAYASRQLRKHEGNYPT 851
Query: 1615 LEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEC 1674
+ + +A K R Y+ + + +KYIF +P L R RW L+++YD+E
Sbjct: 852 HDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEI 911
Query: 1675 RSQKAIKGSILADHLAHQ 1692
K +++AD L+ +
Sbjct: 912 AYHPG-KANVVADALSRK 928
Score = 74.7 bits (182), Expect = 6e-13
Identities = 73/342 (21%), Positives = 132/342 (38%), Gaps = 49/342 (14%)
Query: 1952 LIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTT 2011
++ E H F IHP G T + L+ Y W+ M+ D +C CQ+ + +P
Sbjct: 1019 ILSEAHASMFSIHP-GATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVP--- 1074
Query: 2012 LNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFI 2071
D I I + + F+ + + A + K+ V + +
Sbjct: 1075 ---------------DAIWVIMDRLTKSAHFLAIR--------KTDGAAVLAKKYVSEIV 1111
Query: 2072 KNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIK 2131
K H G+P I++D + + + S+ Y PQ +G E + ++
Sbjct: 1112 KLH-----GVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLE 1166
Query: 2132 RIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVL 2190
+++ V+ + W + L Y S + S G PF +YG P+ +
Sbjct: 1167 DMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLR-----WTQV 1221
Query: 2191 MEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLK 2250
E + A++VQ +++ +++ A Q R + DK+ R EF+ GD V
Sbjct: 1222 EERSIYGADYVQETTERIRVLKLNMKEA-------QARQRSYADKRRRELEFEVGDRVYL 1274
Query: 2251 KIFSFQPDSRG----KWAPNYEGPYVVKRAFSGGAMTLQTMD 2288
K+ + +R K +P Y GP+ + A L+ D
Sbjct: 1275 KMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPD 1316
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 261 bits (667), Expect = 3e-69
Identities = 161/539 (29%), Positives = 265/539 (48%), Gaps = 50/539 (9%)
Query: 1193 LEQEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQD 1252
++ K ++P L + LG I V + EL+K Y +S D
Sbjct: 820 IKAPKVDLKPLPKGLRYVFLGLNSTYPVIVNDELTADQVNLLITELMK-YRKAIGYSLDD 878
Query: 1253 MPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLA 1312
+ G+ + H + L+ E + RR P++ +K+E+ K +DAG + + W++
Sbjct: 879 IKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVS 938
Query: 1313 NIVPVPKKDGKV------------------RMCVDYRDLNKASPKDDFPLPHIDVLVDST 1354
+ VPKK G RMC++YR LN AS K+ FPLP ID +++
Sbjct: 939 PVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERL 998
Query: 1355 AKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1414
A + F+D +SG+ QI + P D+ KT+F P+GTF YK MPFGL NA AT+QR MT++
Sbjct: 999 ANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSI 1058
Query: 1415 FHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLG 1474
F D+I + +EV++DD V + + L ++ +R + L LN KC F VR G +LG
Sbjct: 1059 FSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLG 1118
Query: 1475 FIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1534
+S++GIEVD K+ + ++ P+T K++R FLG + FI + P+ +LL K
Sbjct: 1119 RKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCK 1178
Query: 1535 EQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRK 1594
E + ++C AF IK+ L+ PI+ P P +
Sbjct: 1179 ETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII--------------------- 1217
Query: 1595 EHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKP 1654
+ + RY+ EK A+ +A ++ R Y++ + + +++I+ K
Sbjct: 1218 ---------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKK 1268
Query: 1655 ALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLK 1713
R+ RW +LL E+D+E +K I+ + ADHL+ +ED I P+E++M ++
Sbjct: 1269 DTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 196 bits (498), Expect = 1e-49
Identities = 135/422 (31%), Positives = 210/422 (48%), Gaps = 45/422 (10%)
Query: 1891 PWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEAD 1950
PW+ D +L + E PP S+ +KK + ++F+ + LY D + CV + E +
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1951 LLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPT 2010
++ H ++G H KIL+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFE----------- 1442
Query: 2011 TLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKF 2070
F +WGID +G +S G+++ILVAIDY +KWVEA + +VV+K
Sbjct: 1443 ---------NFDVWGIDFMGPFP--SSYGNKYILVAIDYVSKWVEAIASHTNDARVVLKL 1491
Query: 2071 IKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI 2130
K I R+G+P +I+D G + NK + L ++H S G VE +N+ I
Sbjct: 1492 FKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNREI 1543
Query: 2131 KRIVQKMV-VTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRV 2189
K I++K V T KDW L L YRT+ +T G TPF+L+YG LPVE+E ++
Sbjct: 1544 KAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWA 1603
Query: 2190 --LMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
L+ D+ AE + R QLN + + R+ A ++Y++R K DKK+ R+FK GD
Sbjct: 1604 VKLLNFDIKTAE--EKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 2248 VL---KKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKKY 2304
VL ++ F + +W+ GP+ V GA+TL +G+ VN +KKY
Sbjct: 1662 VLLFNSRLRLFPGKLKSRWS----GPFSVTAVRPYGAITLAGKNGD---FTVNGQRLKKY 1714
Query: 2305 FV 2306
+
Sbjct: 1715 MI 1716
Score = 38.9 bits (89), Expect = 0.035
Identities = 66/294 (22%), Positives = 109/294 (36%), Gaps = 58/294 (19%)
Query: 246 DDQILIYYFQESLTGPASKWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMT 305
+D + F SL A +W +L + I ++ D +AF+ ++ N R+D+ T
Sbjct: 83 EDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFT 142
Query: 306 QGDKETFKEYAQRWRDTAAQVSPRIEEKEMTKLFLKTLNHFYYKKMVGSTPKSFAEMVGM 365
Q + ETF E +R++ Q ++ L T ++
Sbjct: 143 QTNNETFYEAWERFKGYQTQCPHH-------EMLLDTASN-------------------- 175
Query: 366 GVQLEEGVREG-RLVKNTTPVSG--------TKKTGNHFPRKKEQEVGMVTHGGPQQTYP 416
G L + V +G +V+N G + +T + K +E+ + +
Sbjct: 176 GNFLNKDVEDGWEVVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDKLLLM 235
Query: 417 AYQHIAAITPTSHPFQQTNNHPQIPQYPQIPQ-------YPQFPQNPSPQNVQPQSVQQQ 469
+HI + Q Q+ + + + F QN N+ +S
Sbjct: 236 QQKHIHFLGDDETLQVQDGETLQLEEVSYVQNQGGYNKGFNNFKQN--HPNLSYRSTNVA 293
Query: 470 NFQQQPY----QQQPYQQQPYQQ----YPYQQYPQQNFQQQ----PYQQRPQQP 511
N Q Q Y Q QP PY Q P QQY Q N+QQQ + Q+ QQP
Sbjct: 294 NRQDQVYPSQQQNQPKPFVPYNQGQGYVPKQQY-QGNYQQQLPPPGFTQQQQQP 346
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 256 bits (654), Expect = 1e-67
Identities = 153/487 (31%), Positives = 256/487 (52%), Gaps = 23/487 (4%)
Query: 1206 ELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHL 1265
E ++ G + + + A + ++ E E+ DVF S Q +P +D +
Sbjct: 414 EGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVFQ-SLQGLPPSRSDPFT--I 470
Query: 1266 PLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVR 1325
L+P P+ + R P ++K++++ + A L V KKDG R
Sbjct: 471 ELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------------VKKKDGSFR 517
Query: 1326 MCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFI 1385
+C+DYR LN + K+ +PLP ID L+D + FS +D SGY+ I +A D KT+F
Sbjct: 518 LCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFR 577
Query: 1386 TPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQ 1445
T +G F + VMPFGL NA A + R M ++F +++ + + +++DD++V S + E+H +L+
Sbjct: 578 TRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLR 637
Query: 1446 KMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVR 1505
++ ++LR+ KL +KC+F R LG IVS +G+ VDP+K++AIR+ P E+R
Sbjct: 638 RVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIR 697
Query: 1506 GFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPV 1565
FLG Y RF+ + P+ KL K+ VW+ +C++ F S+K+ L P+L P
Sbjct: 698 SFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPE 757
Query: 1566 EGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWA 1625
G P ++Y +GCVL Q+ + I Y S++ + E Y + A+ +A
Sbjct: 758 HGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGNYPTHDLEMAAVIFA 811
Query: 1626 AKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSIL 1685
K R Y+ + + +KYIF +P L R +W L+++YD+E K +++
Sbjct: 812 LKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPG-KANVV 870
Query: 1686 ADHLAHQ 1692
AD L+H+
Sbjct: 871 ADALSHK 877
Score = 66.6 bits (161), Expect = 2e-10
Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 27/305 (8%)
Query: 1994 KCHKCQIYADKIHMPPTTLNLLSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK 2052
+C CQ+ + +P L L P W + ID + + S I V +D TK
Sbjct: 949 ECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWVIVDRLTK 1006
Query: 2053 WVEAASYANVTKQ----VVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIE 2108
+A + + K V+ K + I+ +G+P I++D + + + + +
Sbjct: 1007 ---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTK 1063
Query: 2109 HHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATP 2167
S+ Y PQ G E + ++ +++ V+ + W + L Y S S G P
Sbjct: 1064 VQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAP 1123
Query: 2168 FSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQK 2227
F +Y P+ L + E + A++VQ +++ +++ A Q
Sbjct: 1124 FEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEA-------QD 1171
Query: 2228 RMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRG----KWAPNYEGPYVVKRAFSGGAMT 2283
R + DK+ R EF+ GD V K+ + +R K +P Y GP+ + A
Sbjct: 1172 RQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYR 1231
Query: 2284 LQTMD 2288
L+ D
Sbjct: 1232 LELPD 1236
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 254 bits (649), Expect = 4e-67
Identities = 148/431 (34%), Positives = 242/431 (55%), Gaps = 20/431 (4%)
Query: 1204 GDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVH 1263
G E + + TKE VGAS E + I ++ E+ DVFA + +P +D
Sbjct: 98 GCEAYLATITTKE------VGASAEL----KDILIVNEFSDVFA-AVSGVPPDRSDPFT- 145
Query: 1264 HLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGK 1323
+ L+P P+ + R P ++K+++++ + GF+ S+ P W A ++ V KKDG
Sbjct: 146 -IELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGS 203
Query: 1324 VRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTS 1383
R+C+DYR LNK + K+ +PLP ID L+D ++ FS +D SGY+QI + P D KT+
Sbjct: 204 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 263
Query: 1384 FITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKY 1443
F T +G F + VMPFGL NA A + + M +F D + + + +++DD++V S + E H ++
Sbjct: 264 FRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEH 323
Query: 1444 LQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKE 1503
L+ + +RLR+++L +K +F RS LG ++S +G+ VDP+K+++I+E P PR E
Sbjct: 324 LRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATE 383
Query: 1504 VRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIP 1563
+R FLG Y RF+ + P+ +L K+ W+++C+K+F +K L+ P+L+
Sbjct: 384 IRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVL 443
Query: 1564 PVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALA 1623
P EG P +Y +GCVL Q K I Y S++ + E Y + A+
Sbjct: 444 PEEGEPYTVYTDASIVGLGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVV 497
Query: 1624 WAAKRLRHYMI 1634
+A K R Y+I
Sbjct: 498 FALKIWRSYLI 508
Score = 105 bits (263), Expect = 2e-22
Identities = 99/403 (24%), Positives = 170/403 (41%), Gaps = 38/403 (9%)
Query: 1883 AEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSN--FFLNGDILYKRNFDTVL 1940
A VVF K W + Q R+ + KT + S+N +NG +
Sbjct: 494 AAVVFALKIWRSYLIRLAQERDEEIKGWTLNNKTEYQTSNNGTIVVNGRV---------- 543
Query: 1941 LRCV--DKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKC 1998
CV D+ + ++ E H+ F IHP + M + + R Y+W+ M D + KC C
Sbjct: 544 --CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTC 600
Query: 1999 QIYADKIHMPPTTL-NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE-- 2055
Q+ + +P L NL S W + +D + R+ + H + V +D TK
Sbjct: 601 QLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFM 660
Query: 2056 AASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPY 2115
A S + + + K+I + I+ +GIP I++D T +K + S+ Y
Sbjct: 661 AISDKDGAEIIAEKYI-DEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAY 719
Query: 2116 RPQMNGAVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGM 2174
PQ +G E + ++ +++ V+ + +W + L Y S + S G +P+ +YG
Sbjct: 720 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGR 779
Query: 2175 EAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFD 2234
P+ R L + + + ++ ++ L E Q R K +
Sbjct: 780 ACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYAN 827
Query: 2235 KKVRPREFKEGDLVLKKIFSFQP----DSRGKWAPNYEGPYVV 2273
K+ + EF+ GDLV K +++ SR K +P Y GPY V
Sbjct: 828 KRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At3g11970 hypothetical protein
Length = 1499
Score = 248 bits (633), Expect = 3e-65
Identities = 154/463 (33%), Positives = 249/463 (53%), Gaps = 11/463 (2%)
Query: 1228 ETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMAL 1287
E + V E+L EY D+F P + H + L PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKHN--HKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 1288 KIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHI 1347
+I + V+ + G + S+ P + + +V V KKDG R+CVDYR+LN + KD FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 1348 DVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1407
+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 1408 QRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGV 1467
Q M +F + K + V+ DD++V S + E+H ++L+++F+ +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 1468 RSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGP 1527
+ LG +S +GIE DP K+KA++E P P T K++RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 1528 IFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQ 1587
+ L K WT Q+AF+ +K L + P+L P+ + ++ +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 1588 QDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPI 1647
+ H + Y+S++ + S+ EK A+ +A ++ RHY++ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 1648 KYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLA 1690
KY+ E+ T +W L E+D E + ++ K +++AD L+
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 85.9 bits (211), Expect = 3e-16
Identities = 87/327 (26%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1956 IHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLL 2015
+H G H +G + + ++ +YW M D + R C CQ P L L
Sbjct: 1088 LHGSGVGGH-SGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 2016 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVE--AASYANVTKQVVVKFIK 2072
P P ++W + IE S G I+V +D +K A S+ V ++
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKR 2132
N + +G P I++D ++ +E + +S Y PQ +G E N+ ++
Sbjct: 1205 N-VFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLET 1263
Query: 2133 IVQKMVVTYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLM 2191
++ M W + L A + Y T+ +S+ TPF +VYG V P V +P L
Sbjct: 1264 YLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLPGES 1319
Query: 2192 EADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKK 2251
+ + A +Q R D L ++ M A Q RMKQ D+ REF+ GD V K
Sbjct: 1320 KVAV-VARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2252 IFSFQPDS-----RGKWAPNYEGPYVV 2273
+ ++ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g36590 hypothetical protein
Length = 1499
Score = 248 bits (633), Expect = 3e-65
Identities = 154/463 (33%), Positives = 249/463 (53%), Gaps = 11/463 (2%)
Query: 1228 ETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMAL 1287
E + V E+L EY D+F P + H + L PV Q+ R
Sbjct: 558 ELGEESVVEEVLNEYPDIFIEPTALPPFREKHN--HKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 1288 KIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHI 1347
+I + V+ + G + S+ P + + +V V KKDG R+CVDYR+LN + KD FP+P I
Sbjct: 616 EIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 1348 DVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1407
+ L+D + +FS +D +GY+Q++M P+D +KT+F T G F Y VMPFGL NA AT+
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 1408 QRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGV 1467
Q M +F + K + V+ DD++V S + E+H ++L+++F+ +R KL +KC F V
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 1468 RSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGP 1527
+ LG +S +GIE DP K+KA++E P P T K++RGFLG Y RF+ GP
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 1528 IFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQ 1587
+ L K WT Q+AF+ +K L + P+L P+ + ++ +G VL Q
Sbjct: 855 L-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ 913
Query: 1588 QDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPI 1647
+ H + Y+S++ + S+ EK A+ +A ++ RHY++ + + +
Sbjct: 914 EG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSL 967
Query: 1648 KYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLA 1690
KY+ E+ T +W L E+D E + ++ K +++AD L+
Sbjct: 968 KYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009
Score = 80.9 bits (198), Expect = 8e-15
Identities = 86/327 (26%), Positives = 137/327 (41%), Gaps = 25/327 (7%)
Query: 1956 IHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLL 2015
+H G H +G + + ++ +Y M D + R C CQ P L L
Sbjct: 1088 LHGSGVGGH-SGRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 2016 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVE--AASYANVTKQVVVKFIK 2072
P P ++W + IE S G I+V +D +K A S+ V ++
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204
Query: 2073 NHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKR 2132
N + +G P I++D ++ +E + +S Y PQ +G E N+ ++
Sbjct: 1205 N-VFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLET 1263
Query: 2133 IVQKMVVTYKD-WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLM 2191
++ M W + L A + Y T+ +S+ TPF +VYG V P V +P L
Sbjct: 1264 YLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLPGES 1319
Query: 2192 EADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKK 2251
+ + A +Q R D L ++ M A Q RMKQ D+ REF+ GD V K
Sbjct: 1320 KVAV-VARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2252 IFSFQPDS-----RGKWAPNYEGPYVV 2273
+ ++ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g35370 hypothetical protein
Length = 1447
Score = 235 bits (599), Expect = 3e-61
Identities = 157/477 (32%), Positives = 259/477 (53%), Gaps = 21/477 (4%)
Query: 1216 EDKKEI-KVGASLETSVKKQVIE-LLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPP 1273
++++EI + A V++ V++ +++E+ DVFA D+P + H + L P
Sbjct: 523 DEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPF-REKHDHKIKLLEGANP 580
Query: 1274 VKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDL 1333
V Q+ R +I + VQ I +G + S+ P + + +V V KKDG R+CVDY +L
Sbjct: 581 VNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTEL 639
Query: 1334 NKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCY 1393
N + KD F +P I+ L+D S VFS +D +GY+Q++M P+D +KT+F T G F Y
Sbjct: 640 NGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEY 699
Query: 1394 KVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRK 1453
VM FGL NA AT+Q M ++F D + K + V+ DD+++ S + E+H ++L+ +F+ +R
Sbjct: 700 LVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRL 759
Query: 1454 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNY 1513
+KL F S + LG +S + IE DP K++A++E P P T K+VRGFLG Y
Sbjct: 760 HKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGY 811
Query: 1514 ISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMY 1573
RF+ + GP+ L K G W+ + Q AFD++K L P+L PV + ++
Sbjct: 812 YRRFVRNFGVIAGPL-HALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVE 870
Query: 1574 LTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYM 1633
+ VL Q K H + Y+S++ + S+ EK A +A ++ RHY+
Sbjct: 871 TDACGQGIRAVLMQ------KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYL 924
Query: 1634 INHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLA 1690
+ + + +KY+ E+ T +W L E+D E + ++ K +++AD L+
Sbjct: 925 LPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQG-KENLVADALS 980
Score = 87.4 bits (215), Expect = 9e-17
Identities = 81/316 (25%), Positives = 134/316 (41%), Gaps = 22/316 (6%)
Query: 1966 NGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWG 2025
+G + + +++ +YW M D R C CQ P L L P P +W
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125
Query: 2026 IDMIGRIEPKASNGHR-FILVAIDYFTKWVEAASYAN-VTKQVVVKFIKNHIICRYGIPN 2083
+ IE ++G + I+V +D +K + A+ + V + +++ +G P
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185
Query: 2084 RIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKD 2143
I++D + KE +E SS Y PQ +G E N+ ++ ++ M
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245
Query: 2144 -WHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQ 2202
W++ LP A + Y T+ +S+ TPF LVYG + +P L + + A +Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAP----PIHLPYLPGKSKVAV-VARSLQ 1300
Query: 2203 NRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDS--- 2259
R + L ++ M A Q RMKQ D+ R F GD V K+ ++ S
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 2260 --RGKWAPNYEGPYVV 2273
K +P Y GPY +
Sbjct: 1354 RVNQKLSPKYFGPYKI 1369
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 229 bits (585), Expect = 1e-59
Identities = 158/543 (29%), Positives = 258/543 (47%), Gaps = 80/543 (14%)
Query: 1193 LEQEKKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQD 1252
L K ++P L V LG I + L ++ L++Y +S D
Sbjct: 295 LNAPKMELKPLPARLRVAFLGPNSTYLVI-INPELNNVESALLLCELRKYRKALGYSLDD 353
Query: 1253 MPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLA 1312
+ G+ + +H + L+ E + RR ++ +K+E+ K +DAG + + W++
Sbjct: 354 ITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLDAGIIYPISDSTWVS 413
Query: 1313 NIVPVPKKDGKV------------------RMCVDYRDLNKASPKDDFPLPHIDVLVDST 1354
+ VPKK G + RMC+DYR LN A+ KD+FPL ID +++
Sbjct: 414 PVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKDNFPLSFIDQMLERL 473
Query: 1355 AKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1414
+ + F+DG+ G+ QI + P+D+EKT+F P+GTF Y+ MPFGL NA AT+Q M +
Sbjct: 474 SNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQHCMKYI 533
Query: 1415 FHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLG 1474
F DMI +EV++DD +V E+ H L LN K F VR G +LG
Sbjct: 534 FSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNWEKSHFMVRDGIVLG 578
Query: 1475 FIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1534
+S+KG+EVD K++ +R FLG + RFI + P +LL K
Sbjct: 579 HKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKDFSKIARPCTQLLCK 625
Query: 1535 EQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRK 1594
EQ + + C +AF+ +K+ L+ I+ PP P + + +G VLGQ+ + +K
Sbjct: 626 EQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYVVGAVLGQRKD--KK 683
Query: 1595 EHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKP 1654
HAIYY S+ + +I HT ++Y+ K
Sbjct: 684 LHAIYYASRTLDGAQ-----------------------VIVHTVHAA-----LRYLLSKK 715
Query: 1655 ALTGRIARWQMLLSEYDIECRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKM 1714
R+ RW +LL ++D+E + +K I+ + AD+L+ +++ ++ P E + +
Sbjct: 716 DAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLSRLRVQEEVLMRDILPGENL--ASI 772
Query: 1715 KDC 1717
+DC
Sbjct: 773 EDC 775
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,483,846
Number of Sequences: 26719
Number of extensions: 2556231
Number of successful extensions: 12402
Number of sequences better than 10.0: 330
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 9311
Number of HSP's gapped (non-prelim): 1471
length of query: 2306
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2191
effective length of database: 8,245,911
effective search space: 18066791001
effective search space used: 18066791001
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC148289.13