BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.12 - phase: 0 
         (214 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g12800 PSI-L protein (PsaL, PSI subunit XI)                        355  8e-99
At5g19150 unknown protein                                              33  0.15
At2g18790 phytochrome B                                                29  2.1
At2g45540 unknown protein                                              28  2.8
At3g32060 hypothetical protein                                         28  3.6
At1g79190 hypothetical protein                                         28  3.6
At3g32940 hypothetical protein                                         28  4.7
At5g17500 putative protein                                             27  6.2
At2g28440 En/Spm-like transposon protein                               27  8.1

>At4g12800 PSI-L protein (PsaL, PSI subunit XI)
          Length = 219

 Score =  355 bits (912), Expect = 8e-99
 Identities = 174/218 (79%), Positives = 197/218 (89%), Gaps = 6/218 (2%)

Query: 2   AAASPMASQLKSSFT-----RPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQV 56
           A+ASPMASQL+SSF+     + L  P+G+ G+ P    P++R  +FTV+A++S+K  +QV
Sbjct: 3   ASASPMASQLRSSFSSASLSQRLAVPKGISGA-PFGVSPTKRVSSFTVRAVKSDKTTFQV 61

Query: 57  IQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVK 116
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPGYRTAVNPLLRG+EVGLAHGFFLVGPFVK
Sbjct: 62  VQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVK 121

Query: 117 AGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPL 176
           AGPLRNT YAGSAGSLAAAGL+VILS+CLTIYG+SSF EG+PSIAPSLTLTGRKKQPD L
Sbjct: 122 AGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQL 181

Query: 177 QTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
           QTADGW+KFTGGFFFGGISGVTWAYFLLYVLDLPYFVK
Sbjct: 182 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219


>At5g19150 unknown protein
          Length = 365

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 110 LVGPFVKAGPLRNTEYA-GSAGSLAAAGLIVILSICLT--IYGVSSFNEGDP-----SIA 161
           LV P + +G +R T ++  S+ S+      ++ ++C +  I  +SS +E D      ++ 
Sbjct: 2   LVKPSIISGLVRLTSHSPSSSSSVLRRQEFLVRTLCGSPIIRAMSSTSEADAESVLRTVT 61

Query: 162 PSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGV 197
           PSL L   K Q   +    G  ++TG  +F  IS +
Sbjct: 62  PSLDLKRHKGQAGKIAVIGGCREYTGAPYFAAISAL 97


>At2g18790 phytochrome B
          Length = 1172

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 63  DPFIGSLETPVTSSPLVAWYLSNLPGYRTAVN----PLLRGIEVGLAHGFFLVGPFVKAG 118
           +P+IG L  P T  P  + +L      R  V+    P+L   +  L     LVG  ++A 
Sbjct: 296 EPYIG-LHYPATDIPQASRFLFKQNRVRMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAP 354

Query: 119 PLRNTEYAGSAGSLAAAGLIVILS 142
              +++Y  + GS+A+  + VI++
Sbjct: 355 HGCHSQYMANMGSIASLAMAVIIN 378


>At2g45540 unknown protein
          Length = 2946

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 124 EYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGR 169
           E  G      A   +V+ S+  T+ GV SF E + S  PS+ L  R
Sbjct: 189 ENFGCGEESEATAFLVVDSLIATMGGVESFEEDEDSNPPSVMLNSR 234


>At3g32060 hypothetical protein
          Length = 487

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 18/80 (22%), Positives = 36/80 (44%), Gaps = 9/80 (11%)

Query: 27  GSSPLHQLPSRRQFNFTVKAIQSE-------KPNYQVIQPINGDPFIGSLETPVTSSPLV 79
           G + + +      F + +K +  E       K N Q++  +  D F+G +ETPV    ++
Sbjct: 124 GGTVVDRAAFANSFGYVIKKLDKERYVLKKRKGNPQLVAAVLHDHFLGQVETPVPR--II 181

Query: 80  AWYLSNLPGYRTAVNPLLRG 99
              +    G + + + +LRG
Sbjct: 182 MELVQTKLGVKVSYSTVLRG 201


>At1g79190 hypothetical protein
          Length = 1280

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 143 ICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQT 178
           +CL +  +S   E DP+  P+L L  R+  P  LQ+
Sbjct: 32  LCLELLNLSQNPEKDPTTIPALLLLLRRTPPSSLQS 67


>At3g32940 hypothetical protein
          Length = 590

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 10  QLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPIN--GDPFIG 67
           Q  +  T P ++PR    S+ L  LP +   +F     +S+  + Q+ QP++    PF G
Sbjct: 462 QQSNIITTPHISPRPNSQSAHLPHLPFQASQHFGQNFTRSQHFDRQMDQPLSHPSAPFHG 521

Query: 68  SLETPVTSSPLVAWYLSNLPG 88
           +  + V   PL      N PG
Sbjct: 522 NARSNV-GPPLSQMMPRNFPG 541


>At5g17500 putative protein
          Length = 526

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 24/78 (30%), Positives = 33/78 (41%), Gaps = 10/78 (12%)

Query: 103 GLAH---GFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNE---- 155
           GL H   G +   P++   PL N  +     SL    ++VIL    T+ G    N+    
Sbjct: 110 GLDHELQGIYTHNPYIVNTPLINV-FQAVVYSLGRHDVMVILDNHKTVPGWCCSNDDPDA 168

Query: 156 --GDPSIAPSLTLTGRKK 171
             GDP   P L + G KK
Sbjct: 169 FFGDPKFNPDLWMLGLKK 186


>At2g28440 En/Spm-like transposon protein
          Length = 268

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 2/37 (5%)

Query: 138 IVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPD 174
           IV+LSICL I+  +   E  PS  P+    GR+   D
Sbjct: 8   IVMLSICLLIFDFAGAQEESPS--PAAVSPGREPSTD 42


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,154,799
Number of Sequences: 26719
Number of extensions: 232109
Number of successful extensions: 442
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 9
length of query: 214
length of database: 11,318,596
effective HSP length: 95
effective length of query: 119
effective length of database: 8,780,291
effective search space: 1044854629
effective search space used: 1044854629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)