BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148240.10 - phase: 0 /pseudo
         (1012 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

orf170 -mitochondrial genome-                                          32  1.4
At5g33300 putative protein                                             30  9.0

>orf170 -mitochondrial genome-
          Length = 170

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 649 IKWMSKVLFLMVSLKKKYMSNNLLGLRILSILTMFI 684
           I WM K+ F M   KKK++  NLL LRIL I  M +
Sbjct: 134 INWMFKMHFSMGIFKKKFICINLLVLRILFIHPMCV 169


>At5g33300 putative protein
          Length = 439

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 421 IESLEIKLQSKVKVMQVQL-ILKMHQNLINLLILKSIQKL----NLVQKLKSLQKLSLIQ 475
           +++ ++KL  K+K+  +Q  +LK       L + K ++K     +++  L + QKL L  
Sbjct: 106 LKAQKVKLHCKIKLDSMQFRLLKASLEKEVLQLKKELRKSEFEKHVLSALNNRQKLILQL 165

Query: 476 K--QKLVQ*NRMKMLLRMFKITLSRLFSQNSNTNLHILRS 513
           K  Q L    R+KMLL+  KI+ ++    +  T+  I  S
Sbjct: 166 KNTQALTALKRLKMLLQSKKISSNKKKGPSKGTSSEIQES 205


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.359    0.160    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,844,156
Number of Sequences: 26719
Number of extensions: 571802
Number of successful extensions: 2033
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2031
Number of HSP's gapped (non-prelim): 3
length of query: 1012
length of database: 11,318,596
effective HSP length: 109
effective length of query: 903
effective length of database: 8,406,225
effective search space: 7590821175
effective search space used: 7590821175
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 65 (29.6 bits)