BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148219.4 + phase: 0 /pseudo
(1109 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10990 putative retrotransposon polyprotein 167 3e-41
At4g14460 retrovirus-related like polyprotein 164 3e-40
At1g26990 polyprotein, putative 163 6e-40
At2g20460 putative retroelement pol polyprotein 162 1e-39
At2g16000 putative retroelement pol polyprotein 159 6e-39
At2g15870 putative retroelement pol polyprotein 155 1e-37
At1g70010 hypothetical protein 155 1e-37
At2g15920 putative retroelement pol polyprotein 140 3e-33
At2g13940 putative retroelement pol polyprotein 140 3e-33
At2g16670 putative retroelement pol polyprotein 139 1e-32
At1g47650 hypothetical protein 138 2e-32
At2g07010 putative retroelement pol polyprotein 134 2e-31
At4g17450 retrotransposon like protein 134 4e-31
At4g10690 retrotransposon like protein 132 8e-31
At4g19780 putative LTR retrotransposon (fragment) 130 5e-30
At4g16020 retrotransposon like protein 130 5e-30
At1g31210 putative reverse transcriptase 129 7e-30
At4g27210 putative protein 128 2e-29
At4g27200 putative protein 128 2e-29
At4g22040 LTR retrotransposon like protein 128 2e-29
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 167 bits (423), Expect = 3e-41
Identities = 83/146 (56%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DW C DSRRS+ G C +LG SLI+W++ KQ +SRSS+E+EYR+L+ AT E+ WL
Sbjct: 884 FSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWL 943
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL DLHVT L+CDN+SALH+ TNP+FHE TKHIEI CH VRD+++AG +K L
Sbjct: 944 QQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLH 1003
Query: 1074 VSSKDQLADIFTNPLLP--QPFSTLL 1097
V + +QLADI T PL P P +LL
Sbjct: 1004 VPTGNQLADILTKPLHPVQSPIFSLL 1029
Score = 38.1 bits (87), Expect = 0.028
Identities = 15/38 (39%), Positives = 26/38 (67%)
Query: 91 HNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
+ + YFLT++DD +R W+ ++K+K+EVS F+ L
Sbjct: 248 YRNLYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKL 285
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 164 bits (414), Expect = 3e-40
Identities = 80/149 (53%), Positives = 103/149 (68%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DWA C D+RRSI G C +LG SLISW++ KQ SRSS+E+EYR+++ AT E+ WL
Sbjct: 1329 FSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEIIWL 1388
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL DLH+ L+CDN+SALH NP+FHE TKHIEI CH VRD+++AG +K L
Sbjct: 1389 QQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKALH 1448
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGM 1102
V +++Q ADI T L P PF LL + +
Sbjct: 1449 VPTENQHADILTKALHPGPFHHLLRQMSL 1477
Score = 65.1 bits (157), Expect = 2e-10
Identities = 34/105 (32%), Positives = 56/105 (52%), Gaps = 16/105 (15%)
Query: 24 GHVSYERLAHMSQLYPF*LFFDSNATCDICHFARQKQLPFHLSSSVASNKFELLHFDI*G 83
GH+ ++RL H S + + K+L + +++ASN F+L+H DI G
Sbjct: 599 GHLWHQRLGHPSSVV----------------LQKLKRLAYISHNNLASNPFDLVHLDIWG 642
Query: 84 PLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
P + I +YFLT++DD +R W+ +L++K +VS FI L
Sbjct: 643 PFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKL 687
>At1g26990 polyprotein, putative
Length = 1436
Score = 163 bits (412), Expect = 6e-40
Identities = 80/155 (51%), Positives = 103/155 (65%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DW C D+RR + G F+GNSL+SWR+ KQ +S SS+EAEYRA+S AT EL WL
Sbjct: 1280 FSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWL 1339
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
Y+L + LYCDN++ALHI N +FHE TKHIE CH VR+ ++AGI+K +
Sbjct: 1340 GYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIF 1399
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHS 1108
V + +QLAD T PL P+PF S LG+LN Y +
Sbjct: 1400 VRTDNQLADTLTKPLYPKPFRENNSKLGLLNIYEA 1434
Score = 86.7 bits (213), Expect = 7e-17
Identities = 44/121 (36%), Positives = 69/121 (56%), Gaps = 4/121 (3%)
Query: 20 HFRLGHVSYERLAHMSQ--LYPF*LFFDSNATCDICHFARQKQLPFHLSSSVASNKFELL 77
H RLGH S+ ++ +S + P ++ C +CH ++QK LPF + + FEL+
Sbjct: 559 HKRLGHPSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELV 618
Query: 78 HFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITLC*KSISYHS 137
H D GP VP + +++YFLTI+DD SR WI LLK K++V +F+ + YH+
Sbjct: 619 HIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMV--ETQYHT 676
Query: 138 Q 138
+
Sbjct: 677 K 677
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 162 bits (410), Expect = 1e-39
Identities = 83/153 (54%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DW C DSRRS G F+G+SLISWR+ KQ T+SRSS+EAEYRAL+ A+ E+ WL
Sbjct: 1306 YTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWL 1365
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL L V + +P+LY D+ +A++I TNP+FHE TKHIEI CH VR+KL G +K L
Sbjct: 1366 STLLLALRVHS-GVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLH 1424
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
V +KDQ+ADI T PL P F+ LLS + + N +
Sbjct: 1425 VKTKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457
Score = 95.1 bits (235), Expect = 2e-19
Identities = 52/125 (41%), Positives = 78/125 (61%), Gaps = 4/125 (3%)
Query: 5 VSVNKLIAILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDS-NATCDICHFARQKQLPF 63
+SVN A++ ++ H RLGH S+ RL +S++ + +A C +CH A+QK+L F
Sbjct: 558 ISVN---AVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSF 614
Query: 64 HLSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVK 123
++++ ++ FELLH D+ GP V + +KYFLTI+DD SR WI LLKSK++V
Sbjct: 615 PSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFP 674
Query: 124 NFITL 128
FI L
Sbjct: 675 AFIDL 679
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 159 bits (403), Expect = 6e-39
Identities = 80/153 (52%), Positives = 106/153 (68%), Gaps = 1/153 (0%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DWA C DSRRS F+G+SLISWR+ KQ T+SRSS+EAEYRAL+ AT E+ WL
Sbjct: 1299 FADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWL 1358
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL L + +P+LY D+ +A++I TNP+FHE TKHI++ CH VR++L G +K L
Sbjct: 1359 FTLLVSLQASP-PVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLH 1417
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
V ++DQ+ADI T PL P F L S + +LN +
Sbjct: 1418 VRTEDQVADILTKPLFPYQFEHLKSKMSILNIF 1450
Score = 87.8 bits (216), Expect = 3e-17
Identities = 47/116 (40%), Positives = 70/116 (59%), Gaps = 4/116 (3%)
Query: 4 NVSVNKLIAILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNAT-CDICHFARQKQLP 62
++SVN A++ ++ H RLGH S +RL +S + + C +CH A+Q++L
Sbjct: 546 SISVN---AVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLS 602
Query: 63 FHLSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEV 118
F S+ V F+LLH D+ GP V + +KYFLTI+DD SR W+ LLK+K+EV
Sbjct: 603 FPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEV 658
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 155 bits (392), Expect = 1e-37
Identities = 81/155 (52%), Positives = 104/155 (66%), Gaps = 1/155 (0%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DWA C DSR S G F+G+SLIS R+ KQ +SRSS+EAEYRAL+ AT EL WL
Sbjct: 1109 FADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWL 1168
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL L T +P+L+ D+ +A++I NP+FHE TKHIEI CH VR+K+ G +K L
Sbjct: 1169 HTLLASLTAATT-IPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLH 1227
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHS 1108
V ++DQ+ADI T PL P F L S + +LN + S
Sbjct: 1228 VRTEDQVADIMTKPLFPNQFEHLKSKMSILNIFES 1262
Score = 84.7 bits (208), Expect = 3e-16
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 4 NVSVNKLIAILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNAT-CDICHFARQKQLP 62
NVSVN ++ I ++ H RL H S +RL +S+ + + C +CH A+ ++L
Sbjct: 405 NVSVNAVVDISTW---HNRLRHASLQRLDVISESLGTTKHKNKGSDYCHVCHLAKHRKLS 461
Query: 63 FHLSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHV 122
F ++V + FE+LH DI GP V + ++YFLTI+DD SR WI LLK+K+EV
Sbjct: 462 FPSQNNVCNEIFEMLHIDIWGPFSVETVDGYQYFLTIVDDHSRATWIYLLKTKSEVLTIF 521
Query: 123 KNFI 126
+FI
Sbjct: 522 HDFI 525
>At1g70010 hypothetical protein
Length = 1315
Score = 155 bits (392), Expect = 1e-37
Identities = 75/155 (48%), Positives = 105/155 (67%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ + D+ C DSRRS G C FLG+SLI W++ KQ +S+SS+EAEYR+LS AT EL WL
Sbjct: 1160 YANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWL 1219
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
L +L V K +L+CDN++A+HI N +FHE TKHIE CH VR++L G+ +
Sbjct: 1220 TNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYH 1279
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHS 1108
++++ Q+AD FT PL P F L+S +G+LN + S
Sbjct: 1280 INTELQIADPFTKPLYPSHFHRLISKMGLLNIFVS 1314
Score = 86.7 bits (213), Expect = 7e-17
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 12 AILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNAT---CDICHFARQKQLPFHLSSS 68
++ S L H RLGH S ++L MS L F N T C +CH ++QK LPF ++
Sbjct: 400 SVTSHDLWHKRLGHPSVQKLQPMSSLLSFPK--QKNNTDFHCRVCHISKQKHLPFVSHNN 457
Query: 69 VASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
+S F+L+H D GP V ++YFLTI+DD SR W+ LL++K++V + F+T+
Sbjct: 458 KSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTM 517
>At2g15920 putative retroelement pol polyprotein
Length = 1100
Score = 140 bits (354), Expect = 3e-33
Identities = 76/155 (49%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DW C DSRRS G F+G+SLIS R+ KQ +SRSS+EAEYRAL+ AT EL L
Sbjct: 941 FADSDWVSCADSRRSTTGFTMFVGDSLISLRSKKQRVVSRSSAEAEYRALALATCELVSL 1000
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL L T +P+L+ ++ +A++I NP+FHE TKH EI C+ VR+K+ G +K L
Sbjct: 1001 HTLLVSLTAAT-SVPILFSNSTTAIYIAINPVFHERTKHTEIDCNTVREKVDDGELKLLH 1059
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHS 1108
V ++DQ+ADI T PL P F L + +LN + S
Sbjct: 1060 VRTEDQVADIMTKPLSPHQFEHLKFKMSILNIFES 1094
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 140 bits (354), Expect = 3e-33
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D DW C +RRSI LG S ISW+T KQ T+S SS+EAEYRA+S A E++WL
Sbjct: 1348 DSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRK 1407
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
LL +L + LYCD+++A+HI NP+FHE TKHIE CH VRD ++ GII V
Sbjct: 1408 LLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVR 1467
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHSP 1109
+ +QLAD+FT L F L+S LG+ N H+P
Sbjct: 1468 TTEQLADVFTKALGRNQFLYLMSKLGVQN-LHTP 1500
Score = 71.6 bits (174), Expect = 2e-12
Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 17 AL*HFRLGHVSYERLAHMSQLYPF*LFFDSNAT-----CDICHFARQKQLPFHLSSSVAS 71
AL H RLGH S+ L+ + LF +++T CD+C A+Q + F S +
Sbjct: 528 ALWHQRLGHPSFSVLSSLP------LFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTE 581
Query: 72 NKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFI 126
F L+H D+ GP VP YFLTI+DD SR VW LL K+EV Q + NF+
Sbjct: 582 ECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFL 636
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 139 bits (349), Expect = 1e-32
Identities = 77/151 (50%), Positives = 97/151 (63%)
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D DWAG SRRS+ G G+S ISW+T KQ T+S+SS+EAEYRA+S EL WL
Sbjct: 1180 DSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQ 1239
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
LL L V+ V+ ++ CD++SA++I TNP+FHE TKHIEI H VRD+ G+I V
Sbjct: 1240 LLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVG 1299
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
+ QLADIFT PL FS LG+ N Y
Sbjct: 1300 TTSQLADIFTKPLGRDCFSAFRIKLGIRNLY 1330
Score = 75.9 bits (185), Expect = 1e-13
Identities = 41/114 (35%), Positives = 62/114 (53%)
Query: 15 SFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNATCDICHFARQKQLPFHLSSSVASNKF 74
++ L H R+GH + ++ + + N CD+CH A+Q + F LS + F
Sbjct: 388 NYELWHSRMGHPAARVVSLIPESSVSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIF 447
Query: 75 ELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
EL++ D+ GP P +YFLTI+DD SR VW+ LL K+E H+KNF +
Sbjct: 448 ELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAM 501
>At1g47650 hypothetical protein
Length = 1409
Score = 138 bits (347), Expect = 2e-32
Identities = 71/126 (56%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
F D DWA C DSRRS G F+G+SLISWR+ KQ +SRSS+EAEYRAL+ T EL WL
Sbjct: 1090 FADSDWASCPDSRRSTTGFSMFVGDSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWL 1149
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL L + + +PVLY D+ +A++I TNP+FHE TKHIE+ CH VR+KL G +K L
Sbjct: 1150 HTLLMSLKASYL-VPVLYSDSTTAIYIATNPVFHERTKHIELDCHTVREKLDNGELKLLH 1208
Query: 1074 VSSKDQ 1079
V ++DQ
Sbjct: 1209 VRTEDQ 1214
Score = 88.6 bits (218), Expect = 2e-17
Identities = 52/124 (41%), Positives = 71/124 (56%), Gaps = 22/124 (17%)
Query: 5 VSVNKLIAILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNAT----------CDICH 54
VSVN A++ ++ H RLGH S +RL +S DS T C +CH
Sbjct: 448 VSVN---AVVDISMWHRRLGHASLQRLDVIS---------DSLGTTKPKNKGSDYCHVCH 495
Query: 55 FARQKQLPFHLSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKS 114
A+Q++LPF + V + F+LLH DI GP V + +KYFLTI+DD SR WI LL++
Sbjct: 496 LAKQRKLPFPSQNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRN 555
Query: 115 KAEV 118
K+EV
Sbjct: 556 KSEV 559
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 134 bits (338), Expect = 2e-31
Identities = 74/154 (48%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D D+ C +RRS+ LG S ISW+T KQ T+S SS+EAEYRA+S A E++WL
Sbjct: 1260 DSDFQSCPLTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNK 1319
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
LL +L +T L+CD+++A+ I NP+FHE TKHIE CH VRD ++ GII V
Sbjct: 1320 LLKELGITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVR 1379
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHSP 1109
+ +QLADIFT L F L+S LG+ N H+P
Sbjct: 1380 TSEQLADIFTKALGRNQFIYLMSKLGIQN-LHTP 1412
Score = 75.5 bits (184), Expect = 2e-13
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 6 SVNKLIAILSFAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNATCDICHFARQKQLPFHL 65
+V+K+ AL H RLGH S+ L+ + L+ S+ +CD+C A+Q + F
Sbjct: 500 TVHKVDITTDHALWHQRLGHPSFSVLSSLP-LFSGSSCSVSSRSCDVCFRAKQTREVFPD 558
Query: 66 SSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNF 125
SS+ +++ F L+H D+ GP VP YFLTI+DD SR VW LL +K+EV + NF
Sbjct: 559 SSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNF 618
Query: 126 I 126
+
Sbjct: 619 L 619
>At4g17450 retrotransposon like protein
Length = 1433
Score = 134 bits (336), Expect = 4e-31
Identities = 61/153 (39%), Positives = 96/153 (61%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D D+ C DSRR + C F+G+ L+SW++ KQ T+S S++EAE+RA+S T E+ WL
Sbjct: 1276 YTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWL 1335
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
L +D V + LYCDN +ALHI N +FHE TK +E+ C+ R+ +++G +K +
Sbjct: 1336 SRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMF 1395
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
V + +Q+AD T + P F L+ +G+ N +
Sbjct: 1396 VETGEQVADPLTKAIHPAQFHKLIGKMGVCNIF 1428
Score = 50.1 bits (118), Expect = 7e-06
Identities = 32/115 (27%), Positives = 52/115 (44%), Gaps = 20/115 (17%)
Query: 20 HFRLGHVSYERLAHMSQLYPF*LFFDSNA------TCDICHFARQKQLPFHLSSSVASNK 73
H RLGH +Y ++ +S + + + C +CH ++QK L F ++ S
Sbjct: 554 HKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAA 613
Query: 74 FELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
F+L+H D GP VP ++ WI LLK+K++V FI +
Sbjct: 614 FDLVHIDTWGPFSVP--------------TNDATWIYLLKNKSDVLHVFPAFINM 654
>At4g10690 retrotransposon like protein
Length = 1515
Score = 132 bits (333), Expect = 8e-31
Identities = 62/150 (41%), Positives = 94/150 (62%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DWAGC D+RRS G C FLG ++ISW + T+S+SS+EAEYR LS A E+ W+
Sbjct: 1273 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1332
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
+LL ++ + ++P +YCDN SA+++ NP H +KH ++ + VR+++ G +
Sbjct: 1333 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1392
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGML 1103
+ + QLADIFT L PF L LG++
Sbjct: 1393 IPASQQLADIFTKSLPQAPFCDLRFKLGVV 1422
Score = 60.5 bits (145), Expect = 5e-09
Identities = 32/98 (32%), Positives = 50/98 (50%)
Query: 20 HFRLGHVSYERLAHMSQLYPF*LFFDSNATCDICHFARQKQLPFHLSSSVASNKFELLHF 79
H RLGH + E L H+ + + S+ C+ C + +LPF S V+S E +H
Sbjct: 459 HQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLERIHC 518
Query: 80 DI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAE 117
D+ GP V +Y++ +D+ SRF W LK K++
Sbjct: 519 DLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSD 556
>At4g19780 putative LTR retrotransposon (fragment)
Length = 306
Score = 130 bits (326), Expect = 5e-30
Identities = 59/153 (38%), Positives = 95/153 (61%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D D+ C DSRR + C F+G+SL+SW++ KQ T+S S++EAE+RA+S T E+ WL
Sbjct: 149 YTDSDFGSCTDSRRCVAAYCMFIGDSLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWL 208
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL+D V + LY DN +ALHI N +FHE TK +E+ C+ R+ +++G ++ +
Sbjct: 209 SRLLDDFKVPFIPPAYLYSDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLRTMF 268
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
V + +Q+ D + P F L+ +G+ N +
Sbjct: 269 VETGEQVVDPLAKAIYPAQFHKLIGKMGVCNIF 301
>At4g16020 retrotransposon like protein
Length = 326
Score = 130 bits (326), Expect = 5e-30
Identities = 64/149 (42%), Positives = 90/149 (59%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DW GC D+RRS G C FLG +LISW + KQ T+SRSS+EAEYR+LS E+ W+
Sbjct: 110 YSDSDWGGCKDTRRSTGGYCTFLGTNLISWSSKKQPTVSRSSTEAEYRSLSETAQEMTWI 169
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
+LL +L + P LY DN S++++ NP FH +KH E H VR+++ G +
Sbjct: 170 CHLLRELGIPLPVTPELYGDNLSSVYLTANPAFHARSKHFEFDYHYVRERVALGSLVVKH 229
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGM 1102
+ + Q+ DIFT L + F L LG+
Sbjct: 230 IPAHQQIVDIFTKSLPYEAFCNLRFKLGV 258
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 129 bits (325), Expect = 7e-30
Identities = 66/161 (40%), Positives = 98/161 (59%)
Query: 945 RNVLVKVFFFPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALS 1004
RN + + + D D AGC ++RRS G C LG++LISW +Q T+S SS+EAEYRAL+
Sbjct: 1204 RNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALT 1263
Query: 1005 AATYELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKL 1064
A E+ W+ +LL DL + +YCDN SA+++ NP H +KH + H +R+++
Sbjct: 1264 YAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQV 1323
Query: 1065 QAGIIKFLLVSSKDQLADIFTNPLLPQPFSTLLSNLGMLNS 1105
G+I+ +S+ QLAD+FT L + F L S LG+ S
Sbjct: 1324 ALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGVSGS 1364
Score = 53.5 bits (127), Expect = 6e-07
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 20 HFRLGHVSYERLAHMSQLYPF*LFFD-SNATCDICHFARQKQLPFHLSSSVASNKFELLH 78
H RLGH + + L H+ + ++ C+ C + +LPF +S S + + +H
Sbjct: 457 HHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIH 516
Query: 79 FDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAE 117
D+ GP V KY+ +DD SR+ W L +K+E
Sbjct: 517 CDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSE 555
>At4g27210 putative protein
Length = 1318
Score = 128 bits (322), Expect = 2e-29
Identities = 62/149 (41%), Positives = 90/149 (59%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DW C +RRS+ G C F+G +L+SW + K T+SRSS+EAEY++LS A E+ WL
Sbjct: 1069 YSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWL 1128
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL +L + P L+CDN SA+++ NP FH TKH +I H VR+++ +
Sbjct: 1129 STLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKH 1188
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGM 1102
+ +Q+ADIFT L + F L LG+
Sbjct: 1189 IPGSEQIADIFTKSLPYEAFIHLRGKLGV 1217
Score = 36.2 bits (82), Expect = 0.11
Identities = 15/43 (34%), Positives = 24/43 (54%)
Query: 75 ELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAE 117
E +H D+ GP + + +Y+ +D SRF WI LK K++
Sbjct: 328 ERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSD 370
>At4g27200 putative protein
Length = 819
Score = 128 bits (322), Expect = 2e-29
Identities = 62/149 (41%), Positives = 90/149 (59%)
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DW C +RRS+ G C F+G +L+SW + K T+SRSS+EAEY++LS A E+ WL
Sbjct: 570 YSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWL 629
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
LL +L + P L+CDN SA+++ NP FH TKH +I H VR+++ +
Sbjct: 630 STLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKH 689
Query: 1074 VSSKDQLADIFTNPLLPQPFSTLLSNLGM 1102
+ +Q+ADIFT L + F L LG+
Sbjct: 690 IPGSEQIADIFTKSLPYEAFIHLRGKLGV 718
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 128 bits (322), Expect = 2e-29
Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D D+A C +RRS+ G LG++ ISW+T KQ TISRSS+EAEYRA++ T EL WL
Sbjct: 956 DSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKR 1015
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
+L DL V+ V+ ++ D++SA+ + NP+ HE TKH+E+ CH +RD + GII V
Sbjct: 1016 VLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVP 1075
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHSP 1109
S QLADI T L + L LG+L+ H+P
Sbjct: 1076 SHKQLADILTKALGEKEVRYFLRKLGILD-VHAP 1108
Score = 72.8 bits (177), Expect = 1e-12
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 16 FAL*HFRLGHVSYERLAHMSQLYPF*LFFDSNA----TCDICHFARQKQLPFHLSSSVAS 71
F L H RLGH S + + L P L CD C A+Q + F L + +
Sbjct: 289 FDLWHRRLGHASDK----IVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSM 344
Query: 72 NKFELLHFDI*GPLIVPFIHNHKYFLTILDDSSRFVWIVLLKSKAEVSQHVKNFITL 128
+ F+L+H D+ GP P +YFLTI+DD SR VW+ L+ K+E +H+K+F+ L
Sbjct: 345 DSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMAL 401
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.362 0.160 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,016,823
Number of Sequences: 26719
Number of extensions: 790100
Number of successful extensions: 3429
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3165
Number of HSP's gapped (non-prelim): 208
length of query: 1109
length of database: 11,318,596
effective HSP length: 110
effective length of query: 999
effective length of database: 8,379,506
effective search space: 8371126494
effective search space used: 8371126494
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148219.4