Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147961.4 - phase: 0 
         (266 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g56780 putative protein                                            167  7e-42
At4g26170 putative transcription factor                                84  6e-17
At5g56770 putative protein                                             68  6e-12
At5g22030 ubiquitin-specific protease 8 (UBP8)                         30  1.7
At1g07980 unknown protein                                              29  2.3
At1g21910 TINY like protein                                            28  3.9
At4g36490 hypothetical protein                                         28  6.6
At3g16350 putative MYB family transcription factor                     27  8.6

>At5g56780 putative protein
          Length = 488

 Score =  167 bits (422), Expect = 7e-42
 Identities = 97/256 (37%), Positives = 141/256 (54%), Gaps = 26/256 (10%)

Query: 13  LFQEIFSQGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDIHQMLNKL 72
           LF++IFS+G  I+YRWAPM ++ +A  TE  LLSTFDYAWN  SNG RR  D+ + L   
Sbjct: 142 LFEDIFSKGGSILYRWAPMGSKREAEATEGMLLSTFDYAWNKGSNGERRQLDLLKKLGDR 201

Query: 73  ASGTRTFSDVAKLILPFTQKKVGIPIKSSKLHLTDDK---LDEADSGSYNVLSRVFKFNR 129
              ++  S +++++ PF + +VGI IK  K  L +++    D  +  S N L+ + K  R
Sbjct: 202 EFMSKRKSGISRMLFPFLRNQVGIRIKGEKHVLKEERKLTCDVDEEKSNNFLTSILKLTR 261

Query: 130 SRPRIVQDTTVGSATNENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTKAIR 189
           SRP+ V D       + +  +CGV+L DG  C R PV+ R RC EHKG R+   + +   
Sbjct: 262 SRPQPVSDRFDEVDGSCSDIVCGVLLEDGGCCIRSPVKGRKRCIEHKGQRVCRVSPEKQT 321

Query: 190 SPKSELESIVRNAYRYQNASHDVEDPPQRTVKCHVEEGITKTIICGIILDDGSTCRRQPV 249
            PKSE+ +            H+ +D                 ++CG+IL D   C ++PV
Sbjct: 322 PPKSEIFT--------GQDHHNHKD---------------SDVVCGVILPDMEPCNKRPV 358

Query: 250 KGRKRCQEHKGRRIRA 265
            GRKRC++HKG RI A
Sbjct: 359 PGRKRCEDHKGMRINA 374


>At4g26170 putative transcription factor
          Length = 349

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 46/229 (20%)

Query: 55  ISNGTRRPDDI--------HQMLNKLASGTRTFSD-------VAKLILPFTQKKVGIPIK 99
           +S+   R DD+          + ++L S +R+F+        +++ ILP TQ K     +
Sbjct: 35  LSHDHGRKDDVLVANLGQPESIRSRLRSYSRSFAHHDLLKQGLSQTILPTTQNKSDNQTE 94

Query: 100 SSKLHLTDDKLDEADSGSY--NVLSRVFKFNRSRPRIVQDTTVGSAT-NENAKICGVMLT 156
             K    +++   +D+     N L  + + +RSRP+ V +        +++A  CGV+L 
Sbjct: 95  EKKSDSEEEREVSSDAAEKESNSLPSILRLSRSRPQPVSEKHDDIVDESDSASACGVLLE 154

Query: 157 DGSICKRPPVEKRVRCPEHKGMRINASTTKAIRSPKSELESIVRNAYRYQNASHDVEDPP 216
           DG+ C   PV+ R RC EHKG R++   +  I  P                     E P 
Sbjct: 155 DGTTCTTTPVKGRKRCTEHKGKRLSR-VSPGIHIP--------------------CEVPT 193

Query: 217 QRTVKCHVEEGITKTIICGIILDDGSTCRRQPVKGRKRCQEHKGRRIRA 265
            R  +C   E I     CG+IL D   CR +PV  RKRC++HKG R+ A
Sbjct: 194 VR--ECEETENI-----CGVILPDMIRCRSKPVSRRKRCEDHKGMRVNA 235



 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 31/149 (20%)

Query: 146 ENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINA--------STTKAIRSPKSELE- 196
           E   ICGV+L D   C+  PV +R RC +HKGMR+NA           KA+   KS+ E 
Sbjct: 199 ETENICGVILPDMIRCRSKPVSRRKRCEDHKGMRVNAFFFLLNPTERDKAVNEDKSKPET 258

Query: 197 --------SIVRNAYRYQNASHDVEDPPQRTVKC--------------HVEEGITKTIIC 234
                   S +      +N        P+ + +C              +V+      +IC
Sbjct: 259 STGMNQEGSGLLCEATTKNGLPCTRSAPEGSKRCWQHKDKTLNHGSSENVQSATASQVIC 318

Query: 235 GIILDDGSTCRRQPVKGRKRCQEHKGRRI 263
           G  L +GS C + PVKGRKRC+EHKG RI
Sbjct: 319 GFKLYNGSVCEKSPVKGRKRCEEHKGMRI 347



 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 136 QDTTVGSATNENAK-------ICGVMLTDGSICKRPPVEKRVRCPEHKGMRINA 182
           +D T+   ++EN +       ICG  L +GS+C++ PV+ R RC EHKGMRI +
Sbjct: 296 KDKTLNHGSSENVQSATASQVICGFKLYNGSVCEKSPVKGRKRCEEHKGMRITS 349


>At5g56770 putative protein
          Length = 254

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 10/94 (10%)

Query: 13  LFQEIFSQGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDIHQMLNKL 72
           L+++IFS+G+ + YRWAP     +A  TE  LLSTFDYAWNT SNG RR    H  L KL
Sbjct: 158 LYEDIFSEGYSVFYRWAP-----EAAATEGMLLSTFDYAWNTCSNGERR----HLELQKL 208

Query: 73  ASGTRTFSDVAKLILPFTQKKVGIPIKSSKLHLT 106
                     +++++P  + +V + IK  K + T
Sbjct: 209 GDPEFMSKRKSQVLVPSIRDQV-VTIKVEKSNYT 241


>At5g22030 ubiquitin-specific protease 8 (UBP8)
          Length = 901

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 21/89 (23%), Positives = 36/89 (39%), Gaps = 2/89 (2%)

Query: 21  GFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDIHQMLNKLASGTRTFS 80
           G P+V R   ++N  D      +LLS+F       +     P +          GT +  
Sbjct: 609 GIPLVSRLCDVENGSDVENLYLKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTSVE 668

Query: 81  DVAKLILPFTQKKVGIPIKSSKLHLTDDK 109
           D     +  T + +  P+   +L+LTDD+
Sbjct: 669 DTNSTDVKETTESLPDPV--LRLYLTDDR 695


>At1g07980 unknown protein
          Length = 206

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 2/48 (4%)

Query: 92  KKVGIPIKSSKLHLTDD--KLDEADSGSYNVLSRVFKFNRSRPRIVQD 137
           K VGIP K+SK    DD    D       N + R+ + + S P+I+QD
Sbjct: 84  KSVGIPTKTSKNREEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQD 131


>At1g21910 TINY like protein
          Length = 230

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 18/44 (40%), Positives = 21/44 (46%)

Query: 81  DVAKLILPFTQKKVGIPIKSSKLHLTDDKLDEADSGSYNVLSRV 124
           DVA L L   Q  +  P  SS  HL D+ LDE    S   + RV
Sbjct: 90  DVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRV 133


>At4g36490 hypothetical protein
          Length = 543

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 18/65 (27%), Positives = 29/65 (43%)

Query: 152 GVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTKAIRSPKSELESIVRNAYRYQNASHD 211
           G M +D    K P + KRV   +HK  + + +     ++   E +S    A   + AS +
Sbjct: 297 GCMRSDKGPWKNPEIMKRVHNGDHKCSKGSQAENSGEKTIPEEDDSTTEPASEEEKASKE 356

Query: 212 VEDPP 216
           VE  P
Sbjct: 357 VEIVP 361


>At3g16350 putative MYB family transcription factor
          Length = 387

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 141 GSATNENAKICGVMLTDGSICKR 163
           GS ++   K+ GV LTDGSI K+
Sbjct: 40  GSGSSSAVKLFGVRLTDGSIIKK 62


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,037,193
Number of Sequences: 26719
Number of extensions: 243582
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 14
length of query: 266
length of database: 11,318,596
effective HSP length: 98
effective length of query: 168
effective length of database: 8,700,134
effective search space: 1461622512
effective search space used: 1461622512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)


Medicago: description of AC147961.4