BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.4 - phase: 0 /pseudo
(1920 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 382 e-105
At2g15410 putative retroelement pol polyprotein 337 5e-92
At3g31530 hypothetical protein 269 1e-71
At2g15100 putative retroelement pol polyprotein 257 5e-68
At1g37200 hypothetical protein 241 3e-63
At2g14400 putative retroelement pol polyprotein 207 6e-53
At2g06320 putative retroelement pol polyprotein 190 6e-48
At1g37060 Athila retroelment ORF 1, putative 187 7e-47
At2g13060 pseudogene 181 3e-45
At2g13230 pseudogene 179 1e-44
At1g36830 hypothetical protein 169 1e-41
At2g11940 putative retroelement gag/pol polyprotein 154 4e-37
At2g13330 F14O4.9 130 7e-30
At2g12040 T10J7.2 115 2e-25
At2g07410 putative retroelement pol polyprotein 110 8e-24
At4g04060 putative transposon protein 100 1e-20
At2g07660 putative retroelement pol polyprotein 95 5e-19
At4g07610 94 6e-19
At2g10780 pseudogene 91 8e-18
At4g07830 putative reverse transcriptase 77 1e-13
>At1g20390 hypothetical protein
Length = 1791
Score = 382 bits (980), Expect = e-105
Identities = 250/727 (34%), Positives = 369/727 (50%), Gaps = 47/727 (6%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
I+Y SK L + ETRY ++EK A+ +A++LR Y +HT +++ P++ +
Sbjct: 1100 IFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQS 1158
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
G++ +W V LSEYDI F+ + A+K +LAD PL + S EE
Sbjct: 1159 GRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE--------- 1209
Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
W L DG+++A G GIG +VSP + + ++ F TNN+ EYE
Sbjct: 1210 --------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYE 1255
Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
I G+ A GM+I + + DS LI Q+ GE+E + K+ Y + + F +L
Sbjct: 1256 VLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKL 1315
Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVP-IIKVQRLERPS-----HVFTIGDVIDQAG 1498
IPR +N ADALA L+ + +D+ II V+ +++PS V + +
Sbjct: 1316 SKIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNA 1371
Query: 1499 ENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRL---ASRFLLDGDILYKRNYDMVL 1555
+ D W +I+ L P DK T RRL A+++ L + L K + +
Sbjct: 1372 PDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAM 1426
Query: 1556 LRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQI 1615
L C+ E ++M + H+G G H+ G ++ KL + G+YW TM DC KC +CQ
Sbjct: 1427 LNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQR 1486
Query: 1616 YADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT 1675
+A IH P L +P+PF +D++G + AS RFILV DYFTKWVEA SY
Sbjct: 1487 HAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWVEAESYA 1544
Query: 1676 NVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQIN 1735
+ V F+ IICR+G+P +IITDNG+ + + C +KI + S+P PQ N
Sbjct: 1545 TIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGN 1604
Query: 1736 GVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 1794
G EA NK I ++K + + W + L L YRTT RS+T TPF+ YGMEA+ P
Sbjct: 1605 GQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAP 1664
Query: 1795 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHP 1854
EV SLR M K E + D+L+ +EE R A+ R Q+YQ +++KVH
Sbjct: 1665 AEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHN 1723
Query: 1855 REFKEGELVLKRRISQQPD-PRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNA 1913
R F G+LVL++ + GK N+EGSY V K G L M G +P N+
Sbjct: 1724 RHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNS 1783
Query: 1914 DLVKKYF 1920
+K+Y+
Sbjct: 1784 MHLKRYY 1790
Score = 68.6 bits (166), Expect = 3e-11
Identities = 47/176 (26%), Positives = 81/176 (45%), Gaps = 7/176 (3%)
Query: 776 FSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 835
F++ +L HN L + + + ++ VL+DTGSS++++ K L ++ ++
Sbjct: 555 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 614
Query: 836 TFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTST 895
+ + FDG +G I LPI +G + F V+ A YN +LG P IH A+ ST
Sbjct: 615 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 674
Query: 896 LHQKLKFAKSGKLVTIHG-------EEAYLVSQLSSFSCIEAGSAEGTAFQGLTIE 944
HQ +KF + T+ +Y S+L + ++ T G+ E
Sbjct: 675 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 730
Score = 48.5 bits (114), Expect = 4e-05
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 133 KTMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQ 192
+T+ EM ++ + + +R ++ +T ++ V + KI + YNG P+
Sbjct: 126 RTISEMSSKIHRATSTAPELDRVLEETQQTPFTRRITNVSIRGAQKIK-LESYNGRNDPK 184
Query: 193 NHIIKY---VRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKS 248
+ + + + DN D+ F + L A W++ L N I +F +L ++F
Sbjct: 185 EFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLK 244
Query: 249 HYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKD 308
HY + + L S+SQ +ES R + R++ IT + +
Sbjct: 245 HYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSR 304
Query: 309 YVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESS 348
+ + + + AP+ + + +R E E +I+ K S+
Sbjct: 305 FRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 344
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 337 bits (863), Expect = 5e-92
Identities = 240/777 (30%), Positives = 355/777 (44%), Gaps = 136/777 (17%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
I+Y+SK L E RY LEK A+ +A++LR Y ++T +++ P++ I +
Sbjct: 1085 IFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQS 1143
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
G++A+W V LSEYDI +K + K P Y +S C
Sbjct: 1144 GRLAKWAVELSEYDIAYKNRTCAKSHRAPTRP---------------------YRRSIPC 1182
Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
+ + P N++ EYE
Sbjct: 1183 RKVDLARFPASNNE------------------------------------------AEYE 1200
Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
A I G+ A G+ +K + Y DS L+ +Q G +E + ++ Y R L F EL
Sbjct: 1201 ALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVRELSYNFEVFEL 1260
Query: 1445 HHIPRDENQMADALATLSS-----MFRV--NHWNDVPIIKVQ-RLERPSHVFTIGDVIDQ 1496
IPR +N ADALA L+S + RV DVP IK+Q + +PS I +Q
Sbjct: 1261 TKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPSEYTVIDLTAEQ 1320
Query: 1497 AGENMVDNKP---------------------------------------------WYYDI 1511
MV P W +I
Sbjct: 1321 LSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSDSPASTNWIEEI 1380
Query: 1512 KQCLLSREYPPGASNKDKKTLRRLASR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLM 1568
+ + R P KDK RRL +R + L + L + + VLL C+D+ EA+Q+M
Sbjct: 1381 RSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEEAQQVM 1435
Query: 1569 HDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALN 1628
++H+G G H+ G ++ K+ + G YW TM DC + +C KCQ +A IH+P L
Sbjct: 1436 REIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQ 1495
Query: 1629 VISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKN 1688
P+PF +D+I AS ++ILV DYFTKW EA SY + + V F+
Sbjct: 1496 TAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARIQSKEVQNFVWK 1553
Query: 1689 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRI 1748
NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG EA NK I
Sbjct: 1554 NIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDG 1613
Query: 1749 VQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR---V 1804
++K + + W + L L YRTT R ST TPFSL YGMEA+ P E +P++R +
Sbjct: 1614 LKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSML 1673
Query: 1805 IMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVL 1864
I + L++ Q D L+ +EE+R A+ R Q+YQ ++KKV R F EG+LVL
Sbjct: 1674 INDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVL 1729
Query: 1865 KRRISQQPD-PRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
++ + GK ++EG Y++ K G L MDG +P N+ +K+Y+
Sbjct: 1730 RKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786
Score = 34.3 bits (77), Expect = 0.72
Identities = 24/102 (23%), Positives = 42/102 (40%), Gaps = 4/102 (3%)
Query: 185 YNGLTCPQNHIIKYVRKMGNY----KDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFD 240
Y GL P+ + +G +D D+ F L A W++ L N I +
Sbjct: 258 YEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVH 317
Query: 241 ELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 282
L +F +YG + L +++Q +ES R + R++
Sbjct: 318 ALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFK 359
>At3g31530 hypothetical protein
Length = 831
Score = 269 bits (687), Expect = 1e-71
Identities = 191/630 (30%), Positives = 302/630 (47%), Gaps = 111/630 (17%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
I+Y+S+ T E+RY +EK A+ +A++LR Y +H+ ++ M P++ I +
Sbjct: 307 IFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQS 365
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
G++A+W + LSEYDI ++ + K +LAD IV L +K+
Sbjct: 366 GRLAKWTIELSEYDIEYQNKTCAKSQVLADF--------------------IVELPTKEA 405
Query: 1325 EE-PLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEY 1383
E PL ++ W L DG+++ G G+G + SP G E TNN+ EY
Sbjct: 406 RENPL-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEY 447
Query: 1384 EACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 1443
EA + G+ A G++I + DS LI NQ GE+ T K+ Y + + L F + E
Sbjct: 448 EALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFE 507
Query: 1444 LHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR----LERPSHVFTIGDVIDQAGE 1499
L IPR EN ADALA L+S + +P+ +++ L + HV I DQ
Sbjct: 508 LTRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISADQDDP 567
Query: 1500 NMVDNKPWYYDIKQCLLSREYPPGASNKDK-KTLRRLASRFLLDGDILYKRNYDMVLLRC 1558
+ N W I + + P S+K K + L+ A+RF+L LYK L+ C
Sbjct: 568 DDC-NSEWMEPIISYISEGKLP---SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTC 623
Query: 1559 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYAD 1618
V+ ++M ++H G+ +A
Sbjct: 624 VEAEAICKIMKEIHSGS----------------------------------------HAP 643
Query: 1619 KIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 1678
IH P L+ I+SP+PF +D+IG + P S + +LV DYF+KW+EA SY ++
Sbjct: 644 TIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIK 701
Query: 1679 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVV 1738
V F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P PQ NG
Sbjct: 702 DAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQA 761
Query: 1739 EAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
EAAN+ L L +RTT R +T TPF+ +YG E V+P E+
Sbjct: 762 EAANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMI 802
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEE 1828
+PSLR + + ++ + Q+ D+L+L++E
Sbjct: 803 VPSLRRSLSPE-NDPDNTQTPLDELDLIDE 831
Score = 40.0 bits (92), Expect = 0.013
Identities = 23/66 (34%), Positives = 32/66 (47%)
Query: 850 LGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLV 909
LG I LP+ T ++ F + D YN ++G P ++ AV ST H LKF S +
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFPTSDSVW 62
Query: 910 TIHGEE 915
G E
Sbjct: 63 EKLGHE 68
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 257 bits (656), Expect = 5e-68
Identities = 176/558 (31%), Positives = 271/558 (48%), Gaps = 68/558 (12%)
Query: 1412 NQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWN 1471
N+ GE+E A + Y + R + F + EL IPR EN A+ALA L+S F V
Sbjct: 790 NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849
Query: 1472 DVPIIKVQ----RLERPSHVFT------------------------IGDVI--------- 1494
+P+ + RL+ S V T I D +
Sbjct: 850 VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909
Query: 1495 ---DQAGENMVDNKP------WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDI 1545
D + D P W I+ +L+ P A + L+ +RF + DI
Sbjct: 910 SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967
Query: 1546 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQ 1605
LY+R + C+ + +M +VHDGT G H G +++ K+ + GYYW T+ DC
Sbjct: 968 LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027
Query: 1606 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYF 1665
+ARKC +CQ +A I P L +S+P+PF +D++G +
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072
Query: 1666 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 1725
T+ VEAA+Y+N+T V FI +IICR+G+P +I+TDNG+ + + CEE++I
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132
Query: 1726 NSSPYRPQINGVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFS 1784
+S+P PQ NG EA NK I ++K + Y+ W L L RTT R +T TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192
Query: 1785 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARM 1844
L+YGMEAV+P E+++PS R I + +E E + D ++ ++E+R A+AR Q+Y
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251
Query: 1845 KTAFDKKVHPREFKEGELVLKRRISQQPDPR--GKWTPNYEGSYVVKKAFSGGALILTHM 1902
++ V R F+ G LVL RR+ Q + GK ++EG Y + G L +M
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINM 1310
Query: 1903 DGVELPNPVNADLVKKYF 1920
+G + N+ +K+++
Sbjct: 1311 EGKTVRRAWNSMHLKRFY 1328
Score = 52.4 bits (124), Expect = 3e-06
Identities = 22/76 (28%), Positives = 47/76 (60%), Gaps = 1/76 (1%)
Query: 1216 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLS 1275
+TRY M+EK A+ AA++LR Y +H +++ + P++ I +G++ +W + LS
Sbjct: 691 KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSGRLGKWAIELS 749
Query: 1276 EYDIVFKTQKAIKGSI 1291
E+D+ F+ + ++ ++
Sbjct: 750 EFDLEFRARTSLNSTM 765
Score = 44.7 bits (104), Expect = 5e-04
Identities = 34/110 (30%), Positives = 52/110 (46%), Gaps = 12/110 (10%)
Query: 812 SSLNVMPKSTLDQLSYRGTPLRR------STFLVKAFDGTRKSVLGEIDLPITIGPETFL 865
S+ N PK+ + + T LR+ +T L + LG + LP+T +
Sbjct: 314 SASNAAPKAPQPATTKKPTELRKPAAGTCTTMLCET-----SMSLGTVVLPVTAQGVVKM 368
Query: 866 ITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQKLKF-AKSGKLVTIHGE 914
+ F V D A+YN +LG P +++ V ST HQ +KF GK+ I E
Sbjct: 369 VEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKMTGISTE 418
>At1g37200 hypothetical protein
Length = 1564
Score = 241 bits (615), Expect = 3e-63
Identities = 167/546 (30%), Positives = 258/546 (46%), Gaps = 89/546 (16%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
IYY+SK L D ET Y +EK A+ +A++LR YL +H ++ PI+ I +
Sbjct: 934 IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIRTILHSTTQS 992
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
++A+W + LSEYDI ++T+ + K +LAD PL D
Sbjct: 993 SRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL-------------------- 1032
Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
+G + N KW L DG++N G G G + SP G I + ++ F +NN EYE
Sbjct: 1033 ------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYE 1086
Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
A I GI+ A GMRI+ + + DS L+ +Q GE+E ++ Y + + L F EL
Sbjct: 1087 ALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFEL 1146
Query: 1445 HHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPSHVFTI------------ 1490
IPR EN DALA L+S V II V+ +E PS T+
Sbjct: 1147 TRIPRGENTSTDALAALASTLDPFVKR-----IIPVEGIEHPSIDLTVKHAGMETSATCN 1201
Query: 1491 ---------------------GDVIDQA----GENMVDNKPWYYDIKQCLLSREYPPGAS 1525
G ++A E + +P Y+ + + G +
Sbjct: 1202 FTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIERGIT 1261
Query: 1526 NKDKKTLRRL---ASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATG 1582
DK R+L ++R+ + L KR+ + C + + LM +H+G G+H +G
Sbjct: 1262 PPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSG 1321
Query: 1583 HTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGID 1642
T+ +L DC H+ +C KCQ +A +H PP ++ ISSP+PF +D
Sbjct: 1322 RTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSMD 1371
Query: 1643 MIGRIEPKASNGH---RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 1699
++ +E AS G + +LV DY TKW+E ++ VT++ V F+ NI+ R+G+P +
Sbjct: 1372 VVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIPYE 1429
Query: 1700 IITDNG 1705
I+TDNG
Sbjct: 1430 IVTDNG 1435
Score = 45.1 bits (105), Expect = 4e-04
Identities = 31/98 (31%), Positives = 50/98 (50%), Gaps = 2/98 (2%)
Query: 1824 NLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPD-PRGKWTPNY 1882
+ ++E+R AM + Q+YQ ++ + R F+ GELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 1883 EGSYVVKKAFSGGALILTHM-DGVELPNPVNADLVKKY 1919
EG Y + + G L + +GV P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
Score = 38.1 bits (87), Expect = 0.050
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 875 ASYNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSC 927
A +N +LGRP +H AV ST HQ +KF + I+G SQ SS C
Sbjct: 530 APFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYG------SQRSSRRC 576
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 207 bits (526), Expect = 6e-53
Identities = 157/536 (29%), Positives = 252/536 (46%), Gaps = 76/536 (14%)
Query: 1409 LIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1466
+I+NQ G++E +++ Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1467 VNHWNDVPIIKVQRLERPSHVFTIGDVIDQA---GENMVDNKPWYY-DIKQCLLSREYPP 1522
VN V I + ++ F + A G+ V+ P K+ + + P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPK--PA 907
Query: 1523 GASNKDKKTLRRLASRFLLDGDI----------------------LYKRNYDMVLLRCVD 1560
N + + + S ++ + LY+R L +
Sbjct: 908 VQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIF 967
Query: 1561 EHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKI 1620
E +M +VH+G G+H++G M+ K+ + YYW TM DC ++A++C +CQ++A I
Sbjct: 968 GPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLI 1027
Query: 1621 HVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1680
H P + IS+P+PF +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1028 HQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA------- 1079
Query: 1681 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEA 1740
I+ +G+ K+ + S+ PQ NG EA
Sbjct: 1080 ---------ILLNWGI------------------------KVSY--STLRYPQGNGQAEA 1104
Query: 1741 ANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 1799
ANK I ++K + + W++ L L YRTT R STG TPFSLVYGM+AV+P E+ +
Sbjct: 1105 ANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNV 1164
Query: 1800 PSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKE 1859
P LR EA L+E E D L+ + E+R A+ + Q+YQ ++ KV R F
Sbjct: 1165 PGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFV 1223
Query: 1860 GELVLKRRI-SQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNAD 1914
G+ VLKR +++ + GK N+EG Y+V + G L ++ + P N +
Sbjct: 1224 GDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
Score = 48.1 bits (113), Expect = 5e-05
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 131 VTKTMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTC 190
V++ ++EM + + E NR + +T ++ + + K+ + + YNGL
Sbjct: 112 VSRELKEMRSKFLQATSSEPDINRVIEKARQTPFTPQITSLRIRDSRKL-NLESYNGLED 170
Query: 191 PQNHIIKYVRKMG----NYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAF 246
P+ ++ ++ G N D D F ++L A W+T L I F+EL+ F
Sbjct: 171 PKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSISNFNELSVVF 230
Query: 247 KSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 289
Y + L +LSQ E+ R + +++ ++++
Sbjct: 231 LKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLS 273
Score = 38.5 bits (88), Expect = 0.038
Identities = 24/89 (26%), Positives = 48/89 (52%), Gaps = 4/89 (4%)
Query: 772 SNLWFSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTP 831
+++ F E E + H+ AL ++++ +S +L+DTGSS++++ STL+++
Sbjct: 407 TSILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRAD 466
Query: 832 LRRSTFLVKAFDGTRKSVLGEIDLPITIG 860
+ R V+ K+V E+D + IG
Sbjct: 467 VNRRKLGVE----RAKAVNDEVDKLLKIG 491
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 190 bits (483), Expect = 6e-48
Identities = 142/439 (32%), Positives = 216/439 (48%), Gaps = 18/439 (4%)
Query: 1487 VFTIGDVIDQAGENMVDN-KPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDI 1545
+F+IG Q N V+ PWY D L PP ++ ++K R + D
Sbjct: 20 LFSIGKEFHQL--NAVEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPY 77
Query: 1546 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWLTMEHDCY 1604
LY D + V E E E ++ HD +G H AT T+S K+L+AG++W TM D
Sbjct: 78 LYTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQ 136
Query: 1605 QHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDY 1664
+ KC CQ + N I F + GID +G +S G+++ILV +DY
Sbjct: 137 EFVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDY 194
Query: 1665 FTKWVEA-ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIE 1723
+KWVEA AS TN K VV K K I R+GV +I+D G + N V + L ++ ++
Sbjct: 195 VSKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVK 253
Query: 1724 HHNSSPYRPQINGVVEAANKNIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATP 1782
H ++PY PQ +G VE +N+ IK I++K V T +DW L AL Y+T ++ G TP
Sbjct: 254 HKVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTP 313
Query: 1783 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQA 1842
F+L+ L +E+E ++ + + R QL+ ++E R++A + Y+
Sbjct: 314 FNLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKE 373
Query: 1843 RMKTAFDKKVHPREFKEGELVL--KRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILT 1900
R K DKK+ ++F+ G+ VL R+ P GK + G + + + GA+ L
Sbjct: 374 RTKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLA 430
Query: 1901 HMDGVELPNPVNADLVKKY 1919
GV VN +KKY
Sbjct: 431 GKSGV---FTVNGQRLKKY 446
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 187 bits (474), Expect = 7e-47
Identities = 139/419 (33%), Positives = 205/419 (48%), Gaps = 43/419 (10%)
Query: 1506 PWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAE 1565
PWY D L+S E PP S+ +KK + + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1566 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPP 1624
++ H +G H AT TMS K+L+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 1625 HALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 1683
F + GID +G +S G+++ILVAIDY +KWVEA AS+TN +VV
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489
Query: 1684 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANK 1743
K K I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541
Query: 1744 NIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 1802
IK I++K V +T +DW L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601
Query: 1803 RVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGEL 1862
+ + R QLN + + R++A + Y+ R K+ DKK+ R+FK G+
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 1863 VL--KRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKY 1919
VL R+ P GK + G + V GA+ L +G VN +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/109 (25%), Positives = 57/109 (51%), Gaps = 1/109 (0%)
Query: 1212 LTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQ 1271
+ D + RY EK A+ +A ++ R YLV + + +++I+ K ++ RW
Sbjct: 1219 MDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWI 1278
Query: 1272 VLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLK 1320
+LL E+D+ +K I+ + ADH + ++D I+ P E+++ ++
Sbjct: 1279 LLLQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 38.9 bits (89), Expect = 0.029
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 183 DRYNGLTC--PQNHIIKYVRKMGNYKDN----DSLMIHCFQDSLMEDAAEWYTSLSKNDI 236
++++GL P +H+ ++ R K N D + F SL + A +W SL + I
Sbjct: 52 NKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 111
Query: 237 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 283
++++ AF + + N+R R + +Q E+F E +R++G
Sbjct: 112 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKG 158
>At2g13060 pseudogene
Length = 930
Score = 181 bits (460), Expect = 3e-45
Identities = 114/365 (31%), Positives = 184/365 (50%), Gaps = 17/365 (4%)
Query: 1506 PWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAE 1565
PWY DI L + P ++ +KK R R+ D LYK +YD + RC+ E
Sbjct: 137 PWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAATEVP 196
Query: 1566 QLMHDVHDGTFGTH-ATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQI---YADKIH 1621
++ H ++G H AT T+S K+L+A ++W TM D + +C CQ + +
Sbjct: 197 SILSHCHSSSYGGHFATFKTVS-KVLQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNE 255
Query: 1622 VPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1681
+PP+ + F GID +G P SN + +ILV +DY +KWVEA + V
Sbjct: 256 MPPNFRLEVEV---FDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIASLKNDSAV 310
Query: 1682 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
V K K+ I R+GVP +I+D + N +++ L ++ ++H ++PY PQ +G VE +
Sbjct: 311 VMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVS 370
Query: 1742 NKNIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 1800
N+ IK I++K V ++W L AL Y+T ++ G TPF L+YG LP+E+E
Sbjct: 371 NRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHK 430
Query: 1801 SLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEG 1860
+ + +S D++ R+ A + Y+ R K DKK+ R F+
Sbjct: 431 AAWAVKMMNFDIKSAGESELDEI------RIHAYDNSKLYKERTKAYHDKKILTRTFEPN 484
Query: 1861 ELVLK 1865
+ +L+
Sbjct: 485 DQILR 489
Score = 33.9 bits (76), Expect = 0.94
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1270 WQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEI 1316
W +LL E+DI + +K ++ + ADH + +DD PI P E I
Sbjct: 13 WILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPINDFLPEENI 58
>At2g13230 pseudogene
Length = 353
Score = 179 bits (454), Expect = 1e-44
Identities = 121/368 (32%), Positives = 193/368 (51%), Gaps = 29/368 (7%)
Query: 1423 AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR-- 1480
A L +D+A++ F + +L IPR EN ADALA L+S +N +P+ +++
Sbjct: 3 AYLALVQDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPS 58
Query: 1481 --LERPSHVFTIGDVIDQAGENMVDNKP-------WYYDIKQCLLSREYPPGASNKDKKT 1531
L++ H F I V E+ DN P W I+ + R+ + +
Sbjct: 59 IELDKVEHAFPIQVVAGY--EDASDNSPSLGCDSEWIEPIRNFISKRKVR--LDKWEARK 114
Query: 1532 LRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLR 1591
L+ A+RF+L + L+K L+ CV++ A ++M +VH G+ G ++ G ++ K+ R
Sbjct: 115 LKAEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKR 174
Query: 1592 AGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKA 1651
GY+W TM DC KCQ A IH+P L+ I+SP+P +D+IG + A
Sbjct: 175 LGYFWPTMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--A 225
Query: 1652 SNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNN 1711
S + +LV DYF+K EA SY ++ + V F+ +I+CR+GVP +I+TDNG+ +
Sbjct: 226 SKQKKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFIST 285
Query: 1712 VVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGY 1770
Q C+++ I S+P Q NG +AANK I ++K +T + W + L L +
Sbjct: 286 RFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSH 345
Query: 1771 RTTVRSST 1778
RTT R +T
Sbjct: 346 RTTPRRAT 353
>At1g36830 hypothetical protein
Length = 243
Score = 169 bits (429), Expect = 1e-41
Identities = 94/233 (40%), Positives = 145/233 (61%), Gaps = 7/233 (3%)
Query: 1641 IDMIGRIEPKASNGHRFI---LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVP 1697
+D++G +E AS G + + LV DY TKW+EA ++ VT++ V F+ NI+C++G+P
Sbjct: 1 MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58
Query: 1698 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYR 1757
+IITDNGTNL + ++A C+++KI S+P+ PQ NG EAANK I ++K++ + +
Sbjct: 59 YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118
Query: 1758 D-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWC 1816
W ++L L YRTT R ST TPFSL YG+EAV+P+ IPS+R S+
Sbjct: 119 SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177
Query: 1817 QSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRIS 1869
Q D ++ ++E+R AM R Q+YQ + ++ + R F+ GELVL++ S
Sbjct: 178 QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 154 bits (390), Expect = 4e-37
Identities = 142/550 (25%), Positives = 234/550 (41%), Gaps = 115/550 (20%)
Query: 1408 ALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM--- 1464
A + G++E ++ Y D R L F K EL +PR EN ADALA L+S
Sbjct: 740 ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799
Query: 1465 ---------------FRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQ----------AGE 1499
R+ N V ++LE ++ + + D+ A E
Sbjct: 800 TVRRIISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLVADE 859
Query: 1500 NMVD-NKP------WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYD 1552
+ + N P W I+ + + P + + L+ +RF L DILY+R
Sbjct: 860 DSTEYNLPHDWGADWREPIRNYIFNGVLP--TDKWEARKLKATCARFCLADDILYRRIIS 917
Query: 1553 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHK 1612
C+ + ++ ++HDGT G H+ G +++ KL + GY+W TM DC +A + +
Sbjct: 918 APDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSRR 977
Query: 1613 CQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 1672
+ SP PF +D++G + ++ G RF+L+ +WVEAA
Sbjct: 978 -------------TFHFGISPLPFMKWSMDIVGPLH-VSTRGVRFLLL------EWVEAA 1017
Query: 1673 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 1732
+Y+ +T+ V FI IICR+G+P +I+TDNG + +A E++I + S+P P
Sbjct: 1018 AYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPRYP 1077
Query: 1733 QINGVVEAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1792
Q G VEA V
Sbjct: 1078 Q--GNVEA---------------------------------------------------V 1084
Query: 1793 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1852
+P E+++P R I K +EA + D ++ ++E+R A+ R Q+Y ++ V
Sbjct: 1085 IPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNSNV 1143
Query: 1853 HPREFKEGELVLKRRISQQPDPR--GKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNP 1910
R F G LVL RRI Q + GK ++EG Y + G ++ +M+G +
Sbjct: 1144 RSRSFDVGTLVL-RRIHQNTAEKGAGKLGISWEGPYKITHIVRNGDCLI-NMEGKTVRRA 1201
Query: 1911 VNADLVKKYF 1920
NA +K+++
Sbjct: 1202 WNAAHLKRFY 1211
Score = 71.2 bits (173), Expect = 5e-12
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
I+Y+SK +D ETRY M+EK A+ AA++LR Y +H +++ + P++ I +
Sbjct: 644 IFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPNQS 702
Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPL 1301
G++A+W + LSE+++ F + ++K +LAD PL
Sbjct: 703 GRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739
>At2g13330 F14O4.9
Length = 889
Score = 130 bits (327), Expect = 7e-30
Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 27/251 (10%)
Query: 1213 TDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQV 1272
T+ + R +EK + + ++LR Y +H ++ PI+ I +G++A+W +
Sbjct: 544 TNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAI 602
Query: 1273 LLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDCEEPLIGEG 1332
L EYDI ++T+ ++K +LAD PL D +G
Sbjct: 603 ELREYDIEYRTRTSLKAQVLADFVIKLPLADL--------------------------DG 636
Query: 1333 PDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEE 1392
+ N KW L DG++N G G+G + SP G I + Q+ F +NN EYEA I GI+
Sbjct: 637 TNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKL 696
Query: 1393 AIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 1452
A I+ + Y DS L+ +Q GE+E ++ Y + + L F +L IPR EN
Sbjct: 697 AQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGEN 756
Query: 1453 QMADALATLSS 1463
AD LA L+S
Sbjct: 757 TSADTLAALAS 767
Score = 69.3 bits (168), Expect = 2e-11
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 776 FSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 835
F E+E+ + K H+ AL I ++ +S ++VDTGSS++V+ + + + L+
Sbjct: 49 FWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGR 108
Query: 836 TFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTST 895
+ F G +G I LP L F V+D A +N +LGRP +H AV ST
Sbjct: 109 KTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPST 168
Query: 896 LHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSC 927
HQ +KF + ++G SQ SS C
Sbjct: 169 YHQCIKFPSYKGIAVVYG------SQRSSRKC 194
>At2g12040 T10J7.2
Length = 976
Score = 115 bits (288), Expect = 2e-25
Identities = 75/243 (30%), Positives = 118/243 (47%), Gaps = 22/243 (9%)
Query: 1636 FSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1695
F GI+ +G I P SN + +ILV +DY +KWVEA + VV K K I +G
Sbjct: 569 FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626
Query: 1696 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTT 1755
VP +I+D G + N ++ L ++ ++H ++PY PQ +G VE +N+ IK I++K V
Sbjct: 627 VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684
Query: 1756 YRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 1815
++ G TPF L+YG LP+E+E + +
Sbjct: 685 -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727
Query: 1816 CQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQP-DP 1874
+ R QLN ++E ++ A + Y+ R K DKK+ R F+ + K+ +P
Sbjct: 728 GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787
Query: 1875 RGK 1877
RGK
Sbjct: 788 RGK 790
Score = 64.3 bits (155), Expect = 7e-10
Identities = 38/116 (32%), Positives = 63/116 (53%), Gaps = 2/116 (1%)
Query: 1204 AIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1263
AIYY S+ L D + Y EK A+ +A ++ R YLV + + +KY+ +
Sbjct: 266 AIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLMQNKDA 325
Query: 1264 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYL 1319
++ RW +LL E+DI + +K ++ +ADH + +DD PI +DF EE +Y+
Sbjct: 326 KPRLLRWILLLQEFDIEVRDKKGVE-KCVADHLSRIRIDDDVPI-NDFLPEENIYM 379
>At2g07410 putative retroelement pol polyprotein
Length = 411
Score = 110 bits (275), Expect = 8e-24
Identities = 67/202 (33%), Positives = 112/202 (55%), Gaps = 9/202 (4%)
Query: 1651 ASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1710
+S G+++ILVA+DY +KWVEA +VV K K I R+GV +I+D + N
Sbjct: 6 SSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGRKHFIN 65
Query: 1711 NVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMV-TTYRDWHEMLPYALHG 1769
+ L ++ ++H ++ Y PQ +G VE +N+ IK I++K V T +D L AL
Sbjct: 66 KAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLDDALWA 125
Query: 1770 YRTTVRSS----TGATPFSLVYGMEAVLPLEVEIPSLRVI--MEAKLSEAEWCQSRYDQL 1823
Y+T +++ G TPF+L+Y LP+E+E ++ + M + AE + R QL
Sbjct: 126 YKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAE--EERLIQL 183
Query: 1824 NLVEEKRMDAMARGQSYQARMK 1845
N ++E R++A ++Y+ + K
Sbjct: 184 NDLDEIRLEAYESSKNYKGKRK 205
>At4g04060 putative transposon protein
Length = 375
Score = 99.8 bits (247), Expect = 1e-20
Identities = 54/148 (36%), Positives = 85/148 (56%), Gaps = 18/148 (12%)
Query: 1582 GHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGI 1641
G M R ++ GY+W TM +C H+ +C KCQ +A +H P ++ ISSP+PF +
Sbjct: 186 GRLMKRSVV--GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSM 243
Query: 1642 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 1701
D++G +E AS G + + + VT++ V F+ NI+CR+G+P +II
Sbjct: 244 DVVGPME--ASGGKKKLKNLL--------------VTEKQVEDFLWENIVCRHGIPYEII 287
Query: 1702 TDNGTNLNNNVVQALCEEFKIEHHNSSP 1729
TDNGTNL + ++A C++ KI S+P
Sbjct: 288 TDNGTNLTSGKIKAFCDKCKIRLTISTP 315
Score = 52.0 bits (123), Expect = 3e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 1396 MRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMA 1455
M I+ + + DS L+I+Q GE+E ++ Y + + L F EL IPR EN A
Sbjct: 1 MGIRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSA 60
Query: 1456 DALATLSSMFRVNHWNDVPIIK----VQRLERPSHVFTI 1490
DALA L+ + P +K V+ +E PS T+
Sbjct: 61 DALAALA-------YTSDPFVKRIIPVEGIEHPSIDLTV 92
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 94.7 bits (234), Expect = 5e-19
Identities = 77/340 (22%), Positives = 147/340 (42%), Gaps = 22/340 (6%)
Query: 1558 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQI 1615
CV A E+++ + H F H + M R L R Y+W+ M D + KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 1616 YADKIHVPPHAL-NVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1674
+ VP L N+ S W + + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 1675 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1733
++ +++A+ + I+ +G+P I++D T + A + + S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 1734 INGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1792
+G E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 1793 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1852
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 830
Query: 1853 HPREFKEGELVLKRRISQQP----DPRGKWTPNYEGSYVV 1888
EF+ G+LV + ++ + R K +P Y G Y V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At4g07610
Length = 276
Score = 94.4 bits (233), Expect = 6e-19
Identities = 55/168 (32%), Positives = 85/168 (49%), Gaps = 2/168 (1%)
Query: 1557 RCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIY 1616
R V E E E ++ H T+G + T K+L+AG++W TM + + KC C
Sbjct: 74 RYVSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRK 133
Query: 1617 ADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTN 1676
+ N I F + GID IG +S G+++ILVA+DY +KW+EA +
Sbjct: 134 GNISKRNEMPQNPILEVELFDVWGIDFIGPFP--SSYGNKYILVAVDYVSKWIEATASPT 191
Query: 1677 VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 1724
+VV K K I R+GVP +I+D G + N V + L ++ ++H
Sbjct: 192 NDAKVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 239
>At2g10780 pseudogene
Length = 1611
Score = 90.5 bits (223), Expect = 8e-18
Identities = 80/365 (21%), Positives = 155/365 (41%), Gaps = 28/365 (7%)
Query: 1558 CVDEHEA--EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQI 1615
CV A E+++ + H F H + M R L R Y+W+ M+ D + KC CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210
Query: 1616 YADKIHVPPHALNVISSP-WPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1674
+ VP L + P W + + +D + + + H + V +D TK +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 1675 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1733
++ +++A+ + I+ +G+P I++D T + +A + + S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 1734 INGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1792
+ E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 1793 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1852
PL + E +L +++ ++ K +A R +SY +K+
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 1438
Query: 1853 HPREFKEGELVLKRRISQQP----DPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELP 1908
EF+ G+LV + ++ + R K +P Y G Y V + A L +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492
Query: 1909 NPVNA 1913
+NA
Sbjct: 1493 PKLNA 1497
Score = 34.3 bits (77), Expect = 0.72
Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
Query: 1203 TAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAV 1262
+ I Y S++L E Y + A+ + K R YL + + +KYIF +
Sbjct: 975 SVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPE 1034
Query: 1263 VTGKIARWQVLLSEY--DIVFKTQKA 1286
+ + RW L+++Y DI + KA
Sbjct: 1035 LNLRQRRWMELVADYNLDIAYHPGKA 1060
>At4g07830 putative reverse transcriptase
Length = 611
Score = 76.6 bits (187), Expect = 1e-13
Identities = 69/310 (22%), Positives = 131/310 (42%), Gaps = 25/310 (8%)
Query: 1560 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADK 1619
D+ ++++ + H F H M R L R Y W+ M+ D +C CQ+ +
Sbjct: 166 DKELRQEILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVGNWVEECDVCQLVKIE 224
Query: 1620 IHVPPHALNVISSP-WPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 1678
V L + P W + + +D + + S I V +D TK +A + +
Sbjct: 225 HQVSGSLLQSLPIPEWKWDFITMDFV--VGLPVSRTKDAIWVIVDRLTK---SAHFLAIR 279
Query: 1679 KQ----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQI 1734
K V+AK + I+ +GVP I++D + + +A E + S+ Y PQ
Sbjct: 280 KTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQT 339
Query: 1735 NGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVL 1793
+G E + ++ +++ V +R W + L Y + ++S G PF ++YG
Sbjct: 340 DGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT 399
Query: 1794 PLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVH 1853
++ E + A++ Q +++ +++ +A R +SY DK+
Sbjct: 400 LCWTQVG------ERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYA-------DKRRK 446
Query: 1854 PREFKEGELV 1863
EF+ G+ V
Sbjct: 447 ELEFEVGDSV 456
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,403,642
Number of Sequences: 26719
Number of extensions: 1965755
Number of successful extensions: 5793
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 5385
Number of HSP's gapped (non-prelim): 369
length of query: 1920
length of database: 11,318,596
effective HSP length: 114
effective length of query: 1806
effective length of database: 8,272,630
effective search space: 14940369780
effective search space used: 14940369780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147714.4