BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.1 - phase: 0 /pseudo
(805 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 281 8e-76
At4g10580 putative reverse-transcriptase -like protein 198 1e-50
At2g04670 putative retroelement pol polyprotein 198 1e-50
At2g07660 putative retroelement pol polyprotein 196 3e-50
At2g14650 putative retroelement pol polyprotein 169 7e-42
At1g36120 putative reverse transcriptase gb|AAD22339.1 160 3e-39
At1g36590 hypothetical protein 149 6e-36
At3g11970 hypothetical protein 148 1e-35
At1g35370 hypothetical protein 147 2e-35
At2g06890 putative retroelement integrase 129 5e-30
At2g05610 putative retroelement pol polyprotein 125 7e-29
At3g31970 hypothetical protein 98 2e-20
At4g04230 putative transposon protein 96 8e-20
At2g14640 putative retroelement pol polyprotein 92 9e-19
At3g43830 putative protein 84 2e-16
At4g03650 putative reverse transcriptase 81 3e-15
At3g29480 hypothetical protein 81 3e-15
At3g43090 putative protein 72 2e-12
At4g03840 putative transposon protein 70 6e-12
At2g06470 putative retroelement pol polyprotein 69 8e-12
>At2g10780 pseudogene
Length = 1611
Score = 281 bits (720), Expect = 8e-76
Identities = 208/647 (32%), Positives = 303/647 (46%), Gaps = 91/647 (14%)
Query: 197 VGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKV 256
V QPN +LE + F G DP A W ++R F+ + E+ +
Sbjct: 154 VNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQR 213
Query: 257 RFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQ 316
H L +A +WW+ + G E V ++A F EF ++YF + + E +L+L Q
Sbjct: 214 DIAVHFLEGDAHNWWLTVEKRRGDE--VRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQ 271
Query: 317 GNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVN 376
GN +V EY +F L ++ E E ++ +F GLR++I+ + +LV
Sbjct: 272 GNRTVREYDEEFNRLRRYVGRELEE--EQAQLRRFIRGLRIEIRNHCLVRTFNSVSELVE 329
Query: 377 SCRIYEEDTKAHYKVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFN 436
+ EE + + +N K + ++ + PADK ++ D K DA C
Sbjct: 330 RAAMIEEGIEEE-RYLNREKAPIRNNQS---TKPADK--KRKFDKVDNTKSDAKTGECVT 383
Query: 437 CGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDI-----------VCFNCNGEGHISS 485
CG K H S C + I C RCG K H + C + + CF C GH+
Sbjct: 384 CG-KNH-SGTCWKAIGACGRCGSKDHAIQSCPKMEPGQSKVLGEETRTCFYCGKTGHLKR 441
Query: 486 QCTQ---------------------PKRAPTTGRVFALTGTQTE--NEDRLIRGTCYINN 522
+C + PKR RV+ L+ + N + G N
Sbjct: 442 ECPKLTAEKQAGQRDNRGGNGLPPPPKRQAVASRVYELSEEANDAGNFRAITGGFRKEPN 501
Query: 523 TPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFG 582
T + V A G G+ + T ++ + + P
Sbjct: 502 TD---------------YGMVRAAG-------GQAMYPTGLVRGISVVVNGVNMPA---- 535
Query: 583 RDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFS---------SVEEESGAEF 633
DL+ +PL DVILGM+WL I+C + F + SG+
Sbjct: 536 -----DLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRIQFERDEGMLKFQGIRTTSGSLV 590
Query: 634 LSTKQLKQLERDGILMF-SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEF 692
+S Q +++ G + + + T + A + +P+V +F +VF + VPP+R F
Sbjct: 591 ISAIQAERMLGKGCEAYLATITTKEVGASAELKDIPIVNEFSDVFA-AVSGVPPDRSDPF 649
Query: 693 SIDLVPGTKPVSMAPYRISASE---LKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSM 749
+I+L PGT P+S APYR++ +E LKKQLE+LL+K F+RPS SPWGA VL VKKKDGS
Sbjct: 650 TIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSF 709
Query: 750 RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQ
Sbjct: 710 RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQ 756
Score = 70.1 bits (170), Expect = 5e-12
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G DP A W ++R F+ +C E+ + H L A +WW+ + G E V
Sbjct: 182 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDE--V 239
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFY-PHYTGENA 128
++A F EF ++YFP + + E +L+L QGN +V EY +F L ++ E A
Sbjct: 240 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRELEEEQA 299
Query: 129 EFSRCIKIQNGLRPDIK 145
+ R I+ GLR +I+
Sbjct: 300 QLRRFIR---GLRIEIR 313
Score = 29.6 bits (65), Expect = 7.0
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 611 VLINCFSKSVHFSSVEEESGAEFLSTKQLKQLER 644
V+++ +KS HF ++ ++ GAE ++ K + ++ R
Sbjct: 1256 VVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVR 1289
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 198 bits (503), Expect = 1e-50
Identities = 120/271 (44%), Positives = 159/271 (58%), Gaps = 29/271 (10%)
Query: 542 CVSALGLDLSDMNGE-MVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVI 600
C S LD D G+ + V AKG + + G DL+ P+ DVI
Sbjct: 331 CFSCGSLDHKDAGGQFLAVLGRAKG----------VDIQIAGESMPADLIISPVELYDVI 380
Query: 601 LGMNWLEYNHVLINCFSKSVHFSSVEEE---------SGAEFLSTKQLKQLERDGILMFS 651
LGM+WL+Y V ++ V F E SG+ +S Q +++ G +
Sbjct: 381 LGMDWLDYYRVHLDWHRGRVFFERPEGRLVYQGVRPISGSLVISAVQAEKMIEKGCEAY- 439
Query: 652 LMATLSIEN---QAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPY 708
+ T+S+ Q + + VV +F +VF + +PP + F+I+L PGT P+S APY
Sbjct: 440 -LVTISMPESVGQVAVSDIRVVQEFQDVF-QSLQGLPPSQSDPFTIELEPGTAPLSKAPY 497
Query: 709 RISASE---LKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKN 765
R++ +E LKKQL+DLL K F+RPS SPWGA VL VKKKDGS RLCIDYR+LN+VT+KN
Sbjct: 498 RMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKN 557
Query: 766 RYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
RYPLPRID+L+DQL GA FSKIDL SGYHQ
Sbjct: 558 RYPLPRIDELLDQLRGATCFSKIDLTSGYHQ 588
Score = 57.0 bits (136), Expect = 4e-08
Identities = 59/235 (25%), Positives = 90/235 (38%), Gaps = 36/235 (15%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM+E + + F G P+ A +W + R F + E +V H L +A WW
Sbjct: 139 RMMEQLQRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDAHLWW 198
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVEL 331
++ T + M+WA F EF +YF ++ ++ YA + +E
Sbjct: 199 RSV--TARRRQTDMSWADFVAEFKAKYFPQE-----------------ALDPYAGQGME- 238
Query: 332 SKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKV 391
+ A+ R F GLR D++ Q LV + EED +
Sbjct: 239 --------DDQAQMRR---FLRGLRPDLRVRCRVSQYATKAALVETAAEVEEDFQRQVVG 287
Query: 392 VN---ERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHK 443
V+ + K QQ P PA K+K R + A CF+CG HK
Sbjct: 288 VSPVVQPKKTQQQVTPSKGGKPAQGQKRKWDHPSRAGQGGRAR--CFSCGSLDHK 340
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/138 (26%), Positives = 58/138 (41%), Gaps = 31/138 (22%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G P+ A +W + R F +C E +V H L A WW ++ T +
Sbjct: 152 FSGGTSPEEADSWRSRVGRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSV--TARRRQTD 209
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++WA F EF +YFP++ ++ YA Q +E + A+
Sbjct: 210 MSWADFVAEFKAKYFPQE-----------------ALDPYAGQGME---------DDQAQ 243
Query: 130 FSRCIKIQNGLRPDIKRR 147
R ++ GLRPD++ R
Sbjct: 244 MRRFLR---GLRPDLRVR 258
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 198 bits (503), Expect = 1e-50
Identities = 111/234 (47%), Positives = 146/234 (61%), Gaps = 18/234 (7%)
Query: 578 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFS---------SVEEE 628
+ + G DL+ P+ DVILGM+WL++ V ++C V F V
Sbjct: 384 IQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPT 443
Query: 629 SGAEFLSTKQLKQLERDGILMFSLMATLSIEN---QAVIDRLPVVCDFPEVFPDEIPDVP 685
SG+ +S Q K++ G + + T+S+ Q + + V+ +F +VF + +P
Sbjct: 444 SGSLVISAVQAKKMIEKGCEAY--LVTISMPESLGQVAVSDIRVIQEFEDVF-QSLQGLP 500
Query: 686 PEREVEFSIDLVPGTKPVSMAPYRISASE---LKKQLEDLLEKKFVRPSVSPWGASVLLV 742
P R F+I+L PGT P+S APYR++ +E LKKQLEDLL K F+RPS SPWGA VL V
Sbjct: 501 PSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFV 560
Query: 743 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
KKKDGS RLCIDYR LN VT+KN+YPLPRID+L+DQL GA FSKIDL SGYHQ
Sbjct: 561 KKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQ 614
Score = 81.6 bits (200), Expect = 2e-15
Identities = 68/241 (28%), Positives = 99/241 (40%), Gaps = 9/241 (3%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM+E + F P+ A +W ++R F + E +V H L +A WW
Sbjct: 125 RMMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWW 184
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVEL 331
++ T + A M+WA F EF +YF ++ + E FLEL QG SV EY +F L
Sbjct: 185 RSV--TARRRQADMSWADFVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRL 242
Query: 332 SKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKV 391
+ ++ R +F GLR D++ Q LV + EED +
Sbjct: 243 LAYAGRGMEDDQAQMR--RFLRGLRPDLRVQCRVSQYATKAALVETAAEVEEDLQRQVVG 300
Query: 392 VN---ERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACP 448
V+ + K QQ P PA K+K R + A F+CG H C
Sbjct: 301 VSPAVQTKNTQQQVTPSKGGKPAQGQKRKWDHPSRAGQGGRAGY--FSCGSLDHTVADCT 358
Query: 449 E 449
E
Sbjct: 359 E 359
Score = 73.2 bits (178), Expect = 6e-13
Identities = 43/136 (31%), Positives = 66/136 (47%), Gaps = 4/136 (2%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F P+ A +W ++R F +C E +V H L A WW ++ T + A
Sbjct: 138 FSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSV--TARRRQAD 195
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++WA F EF +YFP++ + E FLEL QG SV EY +F L + G +
Sbjct: 196 MSWADFVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAGR--GMEDD 253
Query: 130 FSRCIKIQNGLRPDIK 145
++ + GLRPD++
Sbjct: 254 QAQMRRFLRGLRPDLR 269
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 196 bits (499), Expect = 3e-50
Identities = 110/228 (48%), Positives = 146/228 (63%), Gaps = 14/228 (6%)
Query: 582 GRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFS---------SVEEESGAE 632
G + DL+ +PL DVILGM+WL I+C + + F + SG+
Sbjct: 25 GVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFERDEGMLKFQGIRTTSGSL 84
Query: 633 FLSTKQLKQLERDGILMF-SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVE 691
+S Q +++ G + + + T + A + + +V +F +VF + VPP+R
Sbjct: 85 VISAIQAERMLGKGCEAYLATITTKEVGASAELKDILIVNEFSDVFA-AVSGVPPDRSDP 143
Query: 692 FSIDLVPGTKPVSMAPYRISASE---LKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGS 748
F+I+L PGT P+S APYR++ +E LKKQLE+LL K F+RPS SPWGA VL VKKKDGS
Sbjct: 144 FTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGS 203
Query: 749 MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQ
Sbjct: 204 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQ 251
Score = 29.6 bits (65), Expect = 7.0
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 611 VLINCFSKSVHFSSVEEESGAEFLSTKQLKQLER 644
V+++ +KS HF ++ ++ GAE ++ K + ++ R
Sbjct: 648 VVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMR 681
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 169 bits (427), Expect = 7e-42
Identities = 120/322 (37%), Positives = 160/322 (49%), Gaps = 52/322 (16%)
Query: 487 CTQPKRAPTTGRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 546
CT + T+ R A+TG + GT + + D+GA+HCFI + S
Sbjct: 280 CTTREIGGTSNR--AITGFLAHE---VCVGTLLVGGVEAHVLFDSGASHCFITPESASR- 333
Query: 547 GLDLSDMNGEMVVETPAKGSVTTSLVCLK-CPLSMFGRDFEMDLVCLPLSGMDVILGMNW 605
G D ++ A G L K + + G DL+ P+ DVILGM+W
Sbjct: 334 GNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIAGESMPADLIISPVELYDVILGMDW 393
Query: 606 LEYNHVLINCFSKSVHFS---------SVEEESGAEFLSTKQLKQLERDGILMFSLMATL 656
L++ V ++C V F V SG+ +S Q +++ G +
Sbjct: 394 LDHYRVHLDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAY------ 447
Query: 657 SIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASE-- 714
+F +VF + +PP R F+I+L PGT P+S APYR++ +E
Sbjct: 448 --------------LEFEDVF-QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMA 492
Query: 715 -LKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRID 773
LKKQLEDLL GA VL VKKKDGS RLCIDYR LN VT+KN+YPLPRID
Sbjct: 493 ELKKQLEDLL------------GAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRID 540
Query: 774 DLMDQLVGARVFSKIDLRSGYH 795
+L+DQL GA FSKIDL SGYH
Sbjct: 541 ELLDQLRGATCFSKIDLTSGYH 562
Score = 62.4 bits (150), Expect = 1e-09
Identities = 32/98 (32%), Positives = 49/98 (49%), Gaps = 2/98 (2%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G P+ A +W +ER F +C E ++ H L A WW ++ T + A
Sbjct: 156 FSGGTSPEVADSWRSRVERNFGSSRCPAEYRIDLAVHFLEGDAHLWWRSV--TARRRQAD 213
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVT 107
++WA F EF +YFP++ + E FLEL QG ++
Sbjct: 214 ISWADFVAEFNAKYFPQEALDRMEAHFLELTQGRGDIS 251
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM+E + F G P+ A +W +ER F + E ++ H L +A WW
Sbjct: 143 RMMEQLQRIGTGYFSGGTSPEVADSWRSRVERNFGSSRCPAEYRIDLAVHFLEGDAHLWW 202
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVT 322
++ T + A ++WA F EF +YF ++ + E FLEL QG ++
Sbjct: 203 RSV--TARRRQADISWADFVAEFNAKYFPQEALDRMEAHFLELTQGRGDIS 251
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 160 bits (404), Expect = 3e-39
Identities = 153/523 (29%), Positives = 228/523 (43%), Gaps = 81/523 (15%)
Query: 290 FRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCI 349
F EF +YF ++ + E FLEL +G +SV EY +F L + ++ R
Sbjct: 157 FVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKRLLVYAGRGMEDDQAQMR-- 214
Query: 350 KFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRPKPYSA 409
+F GLR D++ Q L + EED + V+ Q + + A
Sbjct: 215 RFLRGLRPDLRVRCRVSQYATKAAL--TAAEVEEDLQRQVVAVSPSV---QPKKIQQQVA 269
Query: 410 PADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNR 469
P+ GK V R+ F G+ G +A + + A R
Sbjct: 270 PSKGGKPAQVQKRKWDHP-------FRAGQGGRAGSAADDSSTSTAGGAAQS---AGAAR 319
Query: 470 TDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTENEDRLIRGTCYINNTPLVAII 529
+ C +S+ C+ TT +A LI G C + +
Sbjct: 320 SAAEC------AAVSTYCSG-----TTWLYYA----------DLISGRCRGH-----VLF 353
Query: 530 DTGATHCFIAFDCVSALGL--DLSDMNGEMVVETPAKGSVTTSLVCLK-CPLSMFGRDFE 586
D+GA+HCFI + S + + + G + + A G T L K + +
Sbjct: 354 DSGASHCFITPESASRDNIRGEPGEQFGAVKI---AGGQFLTVLGRAKGVNIQIEEESMP 410
Query: 587 MDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFS---------SVEEESGAEFLSTK 637
DL+ P+ D ILGM+WL++ V ++C V F V S + +S
Sbjct: 411 ADLIINPVVLYDAILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPTSRSLVISEV 470
Query: 638 QLKQLERDGILMFSLMATLSIE-NQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDL 696
Q++++ G + + ++S Q + + VV +F +VF + +PP R F+I+L
Sbjct: 471 QVEKMIEKGCEAYLVTISMSESVGQVAVSDIWVVQEFEDVF-QSLQGLPPSRSDPFTIEL 529
Query: 697 VPGTKPVSMAPYRI---SASELKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCI 753
GT P+S PYR+ +ELKKQLEDLL K F+RPS S WGA
Sbjct: 530 ELGTAPLSKTPYRMVPAEIAELKKQLEDLLGKGFIRPSTSRWGAP--------------- 574
Query: 754 DYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
LN+VT+KN+YPLPRID+L+DQL GA FSKIDL GYHQ
Sbjct: 575 ---GLNRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQ 614
Score = 45.8 bits (107), Expect = 9e-05
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 75 FRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAEFSRCI 134
F EF +YFP++ + E FLEL +G +SV EY +F L + G + ++
Sbjct: 157 FVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKRLLVYAGR--GMEDDQAQMR 214
Query: 135 KIQNGLRPDIKRR 147
+ GLRPD++ R
Sbjct: 215 RFLRGLRPDLRVR 227
>At1g36590 hypothetical protein
Length = 1499
Score = 149 bits (376), Expect = 6e-36
Identities = 160/623 (25%), Positives = 273/623 (43%), Gaps = 94/623 (15%)
Query: 228 RYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTW 287
R+D + WL ++E F V E+ KV+ A W + + + + W
Sbjct: 116 RFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDW 175
Query: 288 AVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSR 347
+ + R+ + E++ L+ G + +Y KF EL K + + E
Sbjct: 176 KGYVKLLKERFEDDCDDPMAELKHLQETDG---IIDYHQKF-ELIKTRVNLSEEYL---- 227
Query: 348 CIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP--- 404
+ GLR D + + Q + + + + YE KAH K +S P
Sbjct: 228 VSVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYE---KAHLKKPANTTWSTNRSAPTGG 284
Query: 405 -----KPYSAPAD----KGKQKMVDVRRPKKKDAAEI-------VCFNCGEKGHKSNACP 448
K + D KG K V ++PKK E+ +C+ C EK P
Sbjct: 285 YNKYQKEGESKTDHYGNKGNFKPVS-QQPKKMSQQEMSDRRSKGLCYFCDEK-----YTP 338
Query: 449 EEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTE 508
E H R D+ + + + + + V + G +T
Sbjct: 339 EHYLV--------HKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYKTM 390
Query: 509 NEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALG--LDLSDMNGEMVVE---TPA 563
++GT + + +ID+G+TH F+ + + LG +D + + V +
Sbjct: 391 R----VKGT--YDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRV 444
Query: 564 KGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK-SVHF 622
+G VT L+ F+ D++ +PL G+D++LG+ WLE + F K + F
Sbjct: 445 EGKVTDFSWKLQTTT------FQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRF 498
Query: 623 SSVEEE--------SGAEFLSTKQLKQLERDGILMFSLMA-----------------TLS 657
++ + ++L++L+ D + + L T
Sbjct: 499 KFNNQKVLLHGLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSE 558
Query: 658 IENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVE-FSIDLVPGTKPVSMAPYRISA---S 713
+ ++V++ V+ ++P++F + +PP RE I L+ G+ PV+ PYR S +
Sbjct: 559 LGEESVVEE--VLNEYPDIFIEPTA-LPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKN 615
Query: 714 ELKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRID 773
E+ K +EDLL V+ S SP+ + V+LVKKKDG+ RLC+DYR+LN +T+K+ +P+P I+
Sbjct: 616 EIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIE 675
Query: 774 DLMDQLVGARVFSKIDLRSGYHQ 796
DLMD+L GA +FSKIDLR+GYHQ
Sbjct: 676 DLMDELGGAVIFSKIDLRAGYHQ 698
>At3g11970 hypothetical protein
Length = 1499
Score = 148 bits (374), Expect = 1e-35
Identities = 157/625 (25%), Positives = 271/625 (43%), Gaps = 98/625 (15%)
Query: 228 RYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTW 287
R+D + WL ++E F V E+ KV+ A W + + + + W
Sbjct: 116 RFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDW 175
Query: 288 AVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSR 347
+ + R+ + E++ L+ G + +Y KF EL K + + E
Sbjct: 176 KGYVKLLKERFEDDCDDPMAELKHLQETDG---IIDYHQKF-ELIKTRVNLSEEYL---- 227
Query: 348 CIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEE-----------------DTKAHYK 390
+ GLR D + + Q + + + + YE+ T + K
Sbjct: 228 VSVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKAHPKKPANTTWSTNRSAPTGGYNK 287
Query: 391 VVNERKGK----GQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNA 446
E + K G + KP S K Q+ + RR K +C+ C EK
Sbjct: 288 YQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKG------LCYFCDEK-----Y 336
Query: 447 CPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQ 506
PE H R D+ + + + + + V + G +
Sbjct: 337 TPEHYLV--------HKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYK 388
Query: 507 TENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALG--LDLSDMNGEMVVE---T 561
T ++GT + + +ID+G+TH F+ + + LG +D + + V +
Sbjct: 389 TMR----VKGT--YDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKL 442
Query: 562 PAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK-SV 620
+G VT L+ F+ D++ +PL G+D++LG+ WLE + F K +
Sbjct: 443 RVEGKVTDFSWKLQTTT------FQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEM 496
Query: 621 HFSSVEEE--------SGAEFLSTKQLKQLERDGILMFSLMA-----------------T 655
F ++ + ++L++L+ D + + L T
Sbjct: 497 RFKFNNQKVLLHGLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALT 556
Query: 656 LSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVE-FSIDLVPGTKPVSMAPYRISA-- 712
+ ++V++ V+ ++P++F + +PP RE I L+ G+ PV+ PYR S
Sbjct: 557 SELGEESVVEE--VLNEYPDIFIEPTA-LPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQ 613
Query: 713 -SELKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPR 771
+E+ K +EDLL V+ S SP+ + V+LVKKKDG+ RLC+DYR+LN +T+K+ +P+P
Sbjct: 614 KNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPL 673
Query: 772 IDDLMDQLVGARVFSKIDLRSGYHQ 796
I+DLMD+L GA +FSKIDLR+GYHQ
Sbjct: 674 IEDLMDELGGAVIFSKIDLRAGYHQ 698
>At1g35370 hypothetical protein
Length = 1447
Score = 147 bits (372), Expect = 2e-35
Identities = 157/599 (26%), Positives = 262/599 (43%), Gaps = 72/599 (12%)
Query: 228 RYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTW 287
R+D WL ++E F V EE KV+ A W + + + W
Sbjct: 121 RFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNW 180
Query: 288 AVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSR 347
+ + R+ ED E +L++ + + EY +F EL K + + E
Sbjct: 181 PEYVKLLKDRF--EDACDDPMAELKKLQETD-GIVEYHQQF-ELIKVRLNLSEEYL---- 232
Query: 348 CIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRPKPY 407
+ GLR D + + + + +D + + YE +AH K + +R
Sbjct: 233 VSVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYE---RAHPKKTVSSTWSQKGTRSGGS 289
Query: 408 SAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADC 467
P + +QK + +C+ C EK PE H
Sbjct: 290 YRPVKEVEQKSDHLG----------LCYFCDEK-----FTPEHYLV--------HKKTQL 326
Query: 468 NRTDIVCFNCNGEGHISSQCTQPKRAP--TTGRVFALTGTQTENEDRLIRGTCYINNTPL 525
R D+ + +S + K P + V ++G +T ++GT ++ L
Sbjct: 327 FRMDVDEEFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKTMG----VKGT--VDKRDL 380
Query: 526 VAIIDTGATHCFIAFDCVSALGLDLSDMN-GEMVVETPAKGSVTTSLVCLKCPLSMFGRD 584
+ID+G+TH FI + LG + ++ V K +V + L
Sbjct: 381 FILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQ--STT 438
Query: 585 FEMDLVCLPLSGMDVILGMNWLE--------YNHVLINCFSKS--VHFSSVEEESGAEFL 634
F+ D++ +PL G+D++LG+ WLE + + + F K+ V + S +
Sbjct: 439 FQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIK 498
Query: 635 STK-QLKQLERDGILMFSLMATLSIENQAV---------IDRLPVVCDFPEVFPD---EI 681
+ K Q Q ++ + M + +S E Q + + VV + E FPD E
Sbjct: 499 AHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEP 558
Query: 682 PDVPPEREV-EFSIDLVPGTKPVSMAPYRI---SASELKKQLEDLLEKKFVRPSVSPWGA 737
D+PP RE + I L+ G PV+ PYR E+ K ++D+++ ++ S SP+ +
Sbjct: 559 TDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFAS 618
Query: 738 SVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
V+LVKKKDG+ RLC+DY +LN +T+K+R+ +P I+DLMD+L G+ VFSKIDLR+GYHQ
Sbjct: 619 PVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQ 677
>At2g06890 putative retroelement integrase
Length = 1215
Score = 129 bits (325), Expect = 5e-30
Identities = 138/576 (23%), Positives = 231/576 (39%), Gaps = 129/576 (22%)
Query: 288 AVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSR 347
A+ R+ F+ ++ ++ ++ L QGN SV EY + L A SR
Sbjct: 3 AIMRKRFVPSHYHRELH----LKLRNLTQGNRSVEEYYKEMETLMLRADISEDREATLSR 58
Query: 348 CIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTK--------------AHYKVVN 393
F L DI+ + Q +++++ ++E+ K A
Sbjct: 59 ---FLGDLNRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIAKPTYQR 115
Query: 394 ERKGKGQQSRP--------KPYSAPAD-KGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKS 444
E + ++P KPY+A D KGK ++ R ++ C+ C KGH +
Sbjct: 116 EERTSSYHNKPIVSPRAESKPYAAVQDHKGKAEISTSR------VRDVRCYKCQGKGHYA 169
Query: 445 NACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTG 504
N CP K+ + G + + D S + + P G +
Sbjct: 170 NECPN--KRVMILLDNGEIEPEEEIPDS-----------PSSLKENEELPAQGELLVARR 216
Query: 505 T--------QTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGE 556
T + E L C+++ IID G+ + V LGL + +G+
Sbjct: 217 TLSVQTKTDEQEQRKNLFHTRCHVHGKVCSLIIDGGSCTNVASETMVKKLGLKWLNDSGK 276
Query: 557 MVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVC--LPLSGMDVILGMNWLEYNHVLIN 614
M V K V +V K +E +++C LP+ ++LG W V+ +
Sbjct: 277 MRV----KNQVVVPIVIGK---------YEDEILCDVLPMEAGHILLGRPWQSDRKVMHD 323
Query: 615 CFS----------KSVHFSSVEEESGAEFLSTKQLKQL-------------------ERD 645
F+ K++ S E + + KQ K+ +
Sbjct: 324 GFTNRHSFEFKGGKTILVSMTPHEVYQDQIHLKQKKEQVVKQPNFFAKSGEVKSAYSSKQ 383
Query: 646 GILMFSLMATL-SIENQAVI---DRLPVVCDFPEVFPDEIPD-VPPEREVEFSIDLVPGT 700
+L+F L S+ N A + + ++ D+ +VFP++ P +PP R +E ID VPG
Sbjct: 384 PMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGA 443
Query: 701 KPVSMAPYRISASELKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNK 760
+ YR + E K+ L ++KDGS R+C D R +N
Sbjct: 444 SLPNRPAYRTNPVETKE-----------------------LQRQKDGSWRMCFDCRAINN 480
Query: 761 VTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
VT+K +P+PR+DD++D+L G+ +FSKIDL+SGYHQ
Sbjct: 481 VTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQ 516
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 125 bits (315), Expect = 7e-29
Identities = 63/132 (47%), Positives = 95/132 (71%), Gaps = 5/132 (3%)
Query: 669 VVCDFPEVFPDEIPDVPPEREV-EFSIDLVPGTKPVSMAPYRI---SASELKKQLEDLLE 724
VV +FP++F E D+PP R + I+L+ + PV+ PYR +E+ K ++D+L
Sbjct: 10 VVTEFPDIFV-EPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLA 68
Query: 725 KKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARV 784
++ S SP+ + V+LVKKKDG+ RLC+DYR+LN +T+K+R+P+P I+DLMD+L G+ V
Sbjct: 69 SGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNV 128
Query: 785 FSKIDLRSGYHQ 796
+SKIDLR+GYHQ
Sbjct: 129 YSKIDLRAGYHQ 140
>At3g31970 hypothetical protein
Length = 1329
Score = 98.2 bits (243), Expect = 2e-20
Identities = 105/419 (25%), Positives = 156/419 (37%), Gaps = 54/419 (12%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM+E + F G P+ A +W +E F + E +V H L +A WW
Sbjct: 145 RMMEQLQRIGTRYFFGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWW 204
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVEL 331
++ T + A M+WA F EF +YF ++ + E FLEL QG SV EY +F L
Sbjct: 205 RSV--TARRRQAHMSWADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRL 262
Query: 332 SKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAHYKV 391
+ ++ R +F GLR D++ Q LV + EED +
Sbjct: 263 LVYAGRGMQDDQAQMR--RFLRGLRPDLRVRCRVLQYATKAALVETAAEVEEDLQRQVVG 320
Query: 392 VN---ERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACP 448
V+ + K QQ P PA K+K E+GH CP
Sbjct: 321 VSPAVKPKKTQQQVAPSKGGKPAQGQKRK---------------------ERGHLRPNCP 359
Query: 449 EEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTE 508
+ + V + + +R + A T
Sbjct: 360 KLQRMAVAVVQPA---------------------VQHGAQVQQRVQQLAHIAAAPQGYTT 398
Query: 509 NEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVT 568
E I T T + D+GA+HCFI + S G D ++ A G
Sbjct: 399 RE---IGSTSKRAITEAHVLFDSGASHCFITPESASR-GNIRGDPGEQLGAVKVAGGQFL 454
Query: 569 TSLVCLK-CPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVE 626
L K + + G +DL+ P+ DVILGM+WL++ V ++C V F E
Sbjct: 455 AVLGRAKGVDIQIAGESMPVDLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPE 513
Score = 74.3 bits (181), Expect = 2e-13
Identities = 45/138 (32%), Positives = 67/138 (47%), Gaps = 4/138 (2%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G P+ A +W +E F +C E +V H L A WW ++ T + A
Sbjct: 158 FFGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSV--TARRRQAH 215
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++WA F EF +YFP++ + E FLEL QG SV EY +F L + G +
Sbjct: 216 MSWADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAGR--GMQDD 273
Query: 130 FSRCIKIQNGLRPDIKRR 147
++ + GLRPD++ R
Sbjct: 274 QAQMRRFLRGLRPDLRVR 291
>At4g04230 putative transposon protein
Length = 315
Score = 95.9 bits (237), Expect = 8e-20
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 40/176 (22%)
Query: 626 EEESGAEFLSTKQL-KQLERDG---ILMFSLMATLSIENQAVIDRLPVVCD-FPEVFPDE 680
E S + +LS+K + K + G +++F + I + + + VV + ++FP+E
Sbjct: 58 EVRSSSLYLSSKDVCKTMSAKGTVLLMVFKECLSTGIGDPELSAEVQVVLHWYKDLFPEE 117
Query: 681 IPDVPPEREVEFSIDLVPGTKPVSMAPYRISASELKKQLEDLLEKKFVRPSVSPWGASVL 740
IP PG P+ K ++R S+SP VL
Sbjct: 118 IP---------------PGLPPI--------------------HKGYIRESLSPCAVPVL 142
Query: 741 LVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
LV KKDG+ R+C+D R +N +TIK R+P+PR+ D++D+L GA +FSK+DLRSGYHQ
Sbjct: 143 LVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAIIFSKVDLRSGYHQ 198
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 92.4 bits (228), Expect = 9e-19
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 58/337 (17%)
Query: 478 NGEGHISSQCTQPKRAPTTGRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCF 537
N + + + T+ + P ++AL G T + R +R T + N L+A+I++G+TH F
Sbjct: 286 NDDEAVEEESTEAEGKPEI-TLYALEGVDTTSTIR-VRATIHRNR--LIALINSGSTHNF 341
Query: 538 IAFDCVSALGLDLSDMNGEMVVETPAKGSVTTS--LVCLK----CPLSMFGRDFEMDLVC 591
I V MN + P V LVC P+ M G F + L
Sbjct: 342 IGEKAVRG-------MNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYA 394
Query: 592 LPLSGMDVILGMNWLE-YNHVLINCFSKSVHFSSVEEE--------SGAEFLSTKQLKQL 642
LPL G+D+ +G+ WL L N +++ F +E +G + K + +
Sbjct: 395 LPLMGLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLRGVEHKTITKK 454
Query: 643 ERDGILMFSLMATLSIENQAVIDR--LPVVCDFPEVFPDEIP-DVPPEREVEFSIDLVPG 699
R G +F++ + + D ++ +F +F E P +P ER + I L G
Sbjct: 455 ARMGHTIFAITMAHNSSDPNTPDGEIKKLIEEFAGLF--ETPTQLPSERPIVHRIALKKG 512
Query: 700 TKPVSMAPYRISASELKKQLEDLLEKKFVRPSVSPWGASVLLVKKKDGSMRLCIDYRQLN 759
T PV++ PYR + Q +++ +RPS SP+ + VLL
Sbjct: 513 TDPVNVRPYRYAFY----QKDEMSRAGIIRPSSSPFLSPVLL------------------ 550
Query: 760 KVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 796
R+P+P +DD++D+L GA F+K+DL +GY Q
Sbjct: 551 -----ERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQ 582
Score = 36.2 bits (82), Expect = 0.075
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 22 WLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALL---PTLGQEGAV 69
WL + ++ F + EQ VRF T L A+ WW A L T+GQ G++
Sbjct: 119 WLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGWWQATLRRSATIGQTGSL 169
Score = 35.4 bits (80), Expect = 0.13
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 237 WLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALL---PTLGQEGAV 284
WL + ++ F + EQ VRF T L A+ WW A L T+GQ G++
Sbjct: 119 WLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGWWQATLRRSATIGQTGSL 169
>At3g43830 putative protein
Length = 329
Score = 84.3 bits (207), Expect = 2e-16
Identities = 67/247 (27%), Positives = 97/247 (39%), Gaps = 45/247 (18%)
Query: 224 TFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGA 283
TF G DP A W +E F+ M+ E + L EA +WW + Q G
Sbjct: 115 TFNGGTDPVKAYNWRNMLECKFKSMRCPVEFWRDLASCYLRGEAQEWWERVKQR-EQVGC 173
Query: 284 VMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVELSKFYPHYTAENA 343
V W+ F+ EF RRY E+ E++FL L+QG +V +Y +F L +F +
Sbjct: 174 VDQWSFFKEEFTRRYLPEETIDDLEMKFLRLQQGTKTVRKYEKEFHSLERF---ERRKRG 230
Query: 344 EFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVN---SCRIYEEDTKAHYKVVNERKGKGQ 400
E KF +GLR+DI+ + DLV S I E+ + ++ E++ G
Sbjct: 231 EHELIHKFISGLRVDIRLCCHVRDFDNMIDLVEKAASLEIGLEEEARYKRIAQEKEAMG- 289
Query: 401 QSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKK 460
+ G+ GH C E C RCG
Sbjct: 290 -----------------------------------SYGQTGHSKRRCQE--VTCYRCGVA 312
Query: 461 GHVVADC 467
GH+ DC
Sbjct: 313 GHIARDC 319
Score = 76.3 bits (186), Expect = 7e-14
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 9 TFKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGA 68
TF G DP A W +E F+ M+C E + L A +WW + Q G
Sbjct: 115 TFNGGTDPVKAYNWRNMLECKFKSMRCPVEFWRDLASCYLRGEAQEWWERVKQR-EQVGC 173
Query: 69 VVTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENA 128
V W+ F+ EF RRY PE+ E++FL L+QG +V +Y +F L +F GE+
Sbjct: 174 VDQWSFFKEEFTRRYLPEETIDDLEMKFLRLQQGTKTVRKYEKEFHSLERFERRKRGEHE 233
Query: 129 EFSRCIKIQNGLRPDIK 145
+ I +GLR DI+
Sbjct: 234 LIHKFI---SGLRVDIR 247
>At4g03650 putative reverse transcriptase
Length = 839
Score = 80.9 bits (198), Expect = 3e-15
Identities = 71/234 (30%), Positives = 106/234 (44%), Gaps = 16/234 (6%)
Query: 501 ALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVE 560
AL T E E+ L R + +P V T HC + SA ++ GE +
Sbjct: 300 ALVETAAEVEEDLQRQV--VGVSPAVQPKKTQQQHCIASLPPESASRGNIRGDPGEQLGA 357
Query: 561 TPAKGSVTTSLV--CLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSK 618
G +++ + + G DL+ + DVILGM+WL++ V ++C
Sbjct: 358 VKVAGGQFLAVLGGAKGVDIQIAGESLPADLIISHVELYDVILGMDWLDHYRVHLDCHRG 417
Query: 619 SVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIENQAVIDRLPVVCDFPEVFP 678
V F E +G E + L+ L D I + Q + + VV +F VF
Sbjct: 418 RVSFERPEGSAGRE-NDREGLRGLPGDDIY-------AGVCGQVAVSDIRVVQEFQYVF- 468
Query: 679 DEIPDVPPEREVEFSIDLVPGTKPVSMAPYRIS---ASELKKQLEDLLEKKFVR 729
+ +PP R F+I+L P T P+S APYR++ +ELKKQLEDLL + VR
Sbjct: 469 QSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAELKKQLEDLLAEADVR 522
Score = 73.6 bits (179), Expect = 4e-13
Identities = 45/138 (32%), Positives = 68/138 (48%), Gaps = 4/138 (2%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G P+ A +W ++ER F +C E +V H L A WW ++ T + A
Sbjct: 156 FSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSV--TARRRQAD 213
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++WA F EF +YFP + + E FLEL QG SV EY +F L + G +
Sbjct: 214 MSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGR--GMEDD 271
Query: 130 FSRCIKIQNGLRPDIKRR 147
++ + GLRP+++ R
Sbjct: 272 QAQMRRFLRGLRPNLRVR 289
Score = 72.8 bits (177), Expect = 7e-13
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM++ + F G P+ A +W ++ER F + E +V H L +A WW
Sbjct: 143 RMMKQLQRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWW 202
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVEL 331
++ T + A M+WA F EF +YF + + E FLEL QG SV EY KF L
Sbjct: 203 RSV--TARRRQADMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRL 260
Query: 332 SKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEED 384
+ ++ R +F GLR +++ Q LV + EED
Sbjct: 261 LVYAGRGMEDDQAQMR--RFLRGLRPNLRVRCRVSQYATKAALVETAAEVEED 311
>At3g29480 hypothetical protein
Length = 718
Score = 80.9 bits (198), Expect = 3e-15
Identities = 98/414 (23%), Positives = 148/414 (35%), Gaps = 94/414 (22%)
Query: 212 RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEADDWW 271
RM+E + F G P+ A +W +ER F + E +V H L +A WW
Sbjct: 38 RMMEQLQRIGIGYFSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGDAHLWW 97
Query: 272 VALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKFVEL 331
++ T + A M+WA F EF +YF ++ + E FLEL QG SV EY +F
Sbjct: 98 KSV--TTRRRQANMSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDREF--- 152
Query: 332 SKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRI-YEEDTKAHYK 390
R + Y + R S RI + K H +
Sbjct: 153 ----------------------------NRLLVYAECR-------STRIPVVQPKKTHQQ 177
Query: 391 VVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVCFNCGEKGHKSNACPE- 449
V + GK Q + + + P+ G+ CF CG HK C +
Sbjct: 178 VAPSKGGKPAQGQKRSWDHPSRAGQ-------------GGRAGCFFCGSLDHKVADCTQR 224
Query: 450 -EIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTE 508
E ++ C K+ H+ +C + + H + Q + A V L
Sbjct: 225 AETREYYHCRKRRHLRPNCPKLQRMAV---AVVHAAVQ----QGAQVQQNVQQLAHIAPA 277
Query: 509 NEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVT 568
+ R NN + A+ G F+A A G+D+ M
Sbjct: 278 PQGYTTREIGVTNNRAITAVKVVGGQ--FLAV-LGRAKGVDIQIARESM----------- 323
Query: 569 TSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHF 622
P ++F E+ DVILGM+WL+Y V ++C V F
Sbjct: 324 --------PANLFLSPEEL---------YDVILGMDWLDYYRVHLDCHRGRVSF 360
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G P+ A +W +ER F +C E +V H L A WW ++ T + A
Sbjct: 51 FSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGDAHLWWKSV--TTRRRQAN 108
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVEL 116
++WA F EF +YFP++ + E FLEL QG SV EY +F L
Sbjct: 109 MSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDREFNRL 155
>At3g43090 putative protein
Length = 357
Score = 71.6 bits (174), Expect = 2e-12
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G DP A W K +E F +C E + H L E A WW +L + V
Sbjct: 131 FTGGIDPVKADDWRKLLENNFENARCPVEFQKDIIVHFLREEASHWWDGVLGNTPVQH-V 189
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
+ W FR EF R++FP++ E +F EL+Q V E + LS+F E
Sbjct: 190 IFWEDFREEFNRKFFPQEAMDSLEDDFEELRQDTKKVRENERELSHLSRF--SVRAGRGE 247
Query: 130 FSRCIKIQNGLRPDIKRR 147
S ++ GLRPDI R
Sbjct: 248 QSMIRRLMRGLRPDILTR 265
Score = 62.8 bits (151), Expect = 7e-10
Identities = 50/194 (25%), Positives = 75/194 (37%), Gaps = 3/194 (1%)
Query: 209 AEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRFGTHQLAEEAD 268
A+ +++ F G DP A W K +E F + E + H L EEA
Sbjct: 115 AQMEIMKVMRTMGTEYFTGGIDPVKADDWRKLLENNFENARCPVEFQKDIIVHFLREEAS 174
Query: 269 DWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGNMSVTEYAAKF 328
WW +L + + W FR EF R++F ++ E +F EL+Q V E +
Sbjct: 175 HWWDGVLGNTPVQHVIF-WEDFREEFNRKFFPQEAMDSLEDDFEELRQDTKKVRENEREL 233
Query: 329 VELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSCRIYEEDTKAH 388
LS+F A E S + GLR DI ++ DLV E
Sbjct: 234 SHLSRF--SVRAGRGEQSMIRRLMRGLRPDILTRCASREFFSMIDLVEKAARIESGLVLE 291
Query: 389 YKVVNERKGKGQQS 402
K + + + Q+
Sbjct: 292 AKYLKNTQARTTQA 305
>At4g03840 putative transposon protein
Length = 973
Score = 69.7 bits (169), Expect = 6e-12
Identities = 39/127 (30%), Positives = 61/127 (47%), Gaps = 2/127 (1%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G DP A W ++R F+ +C E+ + H L A +WW+ + G E V
Sbjct: 147 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLERDAHNWWLTVEKRRGDE--V 204
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++A F EF ++YFP + + E +L+L QGN +V EY +F L ++ G
Sbjct: 205 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRACGRCGS 264
Query: 130 FSRCIKI 136
I+I
Sbjct: 265 KDHAIQI 271
Score = 66.2 bits (160), Expect = 7e-11
Identities = 40/138 (28%), Positives = 64/138 (45%), Gaps = 2/138 (1%)
Query: 197 VGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKV 256
V QPN +LE + F G DP A W ++R F+ + E+ +
Sbjct: 119 VNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQR 178
Query: 257 RFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQ 316
H L +A +WW+ + G E V ++A F EF ++YF + + E +L+L Q
Sbjct: 179 DIAVHFLERDAHNWWLTVEKRRGDE--VRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQ 236
Query: 317 GNMSVTEYAAKFVELSKF 334
GN +V EY +F L ++
Sbjct: 237 GNRTVREYDEEFNRLRRY 254
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 69.3 bits (168), Expect = 8e-12
Identities = 41/142 (28%), Positives = 66/142 (45%), Gaps = 2/142 (1%)
Query: 10 FKGRYDPDGAQTWLKEIERIFRVMQCTEEQKVRFGTHQLAEAADDWWVALLPTLGQEGAV 69
F G DP A W ++R F+ +C E+ + H L A +WW+ + G E V
Sbjct: 147 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDE--V 204
Query: 70 VTWAVFRREFLRRYFPEDVRGKKEIEFLELKQGNMSVTEYAAQFVELSKFYPHYTGENAE 129
++A F EF ++YFP + + E +L+L QGN +V EY +F L ++ G
Sbjct: 205 RSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRACGRCGS 264
Query: 130 FSRCIKIQNGLRPDIKRRLDTT 151
I+ + P + L+ T
Sbjct: 265 KDHAIQSCPRMEPGQSKVLEPT 286
Score = 65.5 bits (158), Expect = 1e-10
Identities = 40/138 (28%), Positives = 64/138 (45%), Gaps = 2/138 (1%)
Query: 197 VGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKV 256
V QPN +LE + F G DP A W ++R F+ + E+ +
Sbjct: 119 VNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPEDYQR 178
Query: 257 RFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQ 316
H L +A +WW+ + G E V ++A F EF ++YF + + E +L+L Q
Sbjct: 179 DIAVHFLEGDAHNWWLTVEKRRGDE--VRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQ 236
Query: 317 GNMSVTEYAAKFVELSKF 334
GN +V EY +F L ++
Sbjct: 237 GNRTVREYDEEFNRLRRY 254
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,936,081
Number of Sequences: 26719
Number of extensions: 788478
Number of successful extensions: 2498
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 296
length of query: 805
length of database: 11,318,596
effective HSP length: 107
effective length of query: 698
effective length of database: 8,459,663
effective search space: 5904844774
effective search space used: 5904844774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC147714.1