BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147538.7 - phase: 0 /pseudo
(113 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23670 hypothetical protein 45 4e-06
At4g14150 kinesin like protein 45 8e-06
At3g20150 kinesin-like protein 39 4e-04
At5g55520 putative protein 34 0.010
At5g21160 unknown protein 31 0.11
At3g05670 unknown protein 31 0.11
At5g41790 myosin heavy chain-like protein 30 0.15
At5g57160 putative protein 30 0.20
At3g15560 hypothetical protein 29 0.44
At1g32830 putaive protein on FARE2.4 (cds2) 28 0.57
At1g02540 hypothetical protein 28 0.57
At5g14270 kinase - like protein 28 0.74
At4g26110 nucleosome assembly protein I-like protein 28 0.97
At3g24660 putative kinase-like protein TMKL1 precursor 28 0.97
At5g24030 unknown protein 27 1.3
At3g57180 unknown protein 27 1.3
At2g12720 putative protein 27 1.3
At5g11240 unknown protein 27 1.7
At4g26660 putative protein 27 1.7
At3g58380 putative protein 27 1.7
>At3g23670 hypothetical protein
Length = 1263
Score = 45.4 bits (106), Expect = 4e-06
Identities = 24/49 (48%), Positives = 34/49 (68%), Gaps = 2/49 (4%)
Query: 2 DPSGGHSAAW-VRKSLNILQ-FSLNRPSSLCCVDEDGDEEMEIDEEDVE 48
+P+ ++ +W R+SL++L+ F L P SL D+DGD EMEIDEE VE
Sbjct: 425 NPNAAYTTSWNARRSLSLLRSFGLGHPKSLPNGDDDGDTEMEIDEEAVE 473
>At4g14150 kinesin like protein
Length = 1662
Score = 44.7 bits (104), Expect = 8e-06
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 2 DPSGGHSAAW-VRKSLNILQ-FSLNRPSSLCCVDEDGDEEMEIDEEDVE 48
+P+ +S AW R+SLN+L+ F L P SL D DGD EMEIDE VE
Sbjct: 457 NPNVAYSTAWNARRSLNLLRSFGLGHPRSLPHEDNDGDIEMEIDEAAVE 505
>At3g20150 kinesin-like protein
Length = 1094
Score = 38.9 bits (89), Expect = 4e-04
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 13 RKSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVED-HVQVNFVSGNHNK 62
R+SLN L+ SLNR L +D D +EE+ +DE+D ++ H+Q+ + G+ N+
Sbjct: 468 RESLNQLRVSLNRSLMLPKIDND-EEEITVDEDDFKELHLQIKSLRGSFNQ 517
>At5g55520 putative protein
Length = 802
Score = 34.3 bits (77), Expect = 0.010
Identities = 16/49 (32%), Positives = 29/49 (58%)
Query: 3 PSGGHSAAWVRKSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVEDHV 51
P G + +VR+SL+ L+ S+N+ + C + G E+ + EE+ +D V
Sbjct: 142 PDGSKNGYFVRESLSQLRNSINKSLVMSCENRQGSEKETMYEEEYDDDV 190
>At5g21160 unknown protein
Length = 826
Score = 30.8 bits (68), Expect = 0.11
Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 9/71 (12%)
Query: 37 DEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDS---FEV 93
D++M +D++D++ V V SG + I TE KN P ++I D FE
Sbjct: 470 DDDMAVDDQDIQKLVIVTQNSGKSDGAGIGG------TEAKNIPKELASTINDGLYYFEQ 523
Query: 94 KLEQELNGLRQ 104
+L+++ +G R+
Sbjct: 524 ELKKKRSGRRK 534
>At3g05670 unknown protein
Length = 883
Score = 30.8 bits (68), Expect = 0.11
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 33 DEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQD-LAQLTEKKNN 79
+EDGDEE E D E+V+ + + G KM + +QD ++ TEK+++
Sbjct: 173 EEDGDEEEERDVENVDSN---SLHDGEDGKMALEEQDNVSHETEKEDD 217
>At5g41790 myosin heavy chain-like protein
Length = 1305
Score = 30.4 bits (67), Expect = 0.15
Identities = 23/69 (33%), Positives = 36/69 (51%), Gaps = 12/69 (17%)
Query: 36 GDEEMEIDEE---DVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASI---KD 89
G + E+DEE E++VQ+ H+K+N+A ++ LTE NN S+ K
Sbjct: 948 GKQRSELDEELRTKKEENVQM------HDKINVASSEIMALTELINNLKNELDSLQVQKS 1001
Query: 90 SFEVKLEQE 98
E +LE+E
Sbjct: 1002 ETEAELERE 1010
>At5g57160 putative protein
Length = 1184
Score = 30.0 bits (66), Expect = 0.20
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 36 GDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQ-----DLAQLTE--KKNNPCGFQASIK 88
GDE E DE D ++V + GN ++ ++ D+A+ TE +++N + +++
Sbjct: 1020 GDESDENDELDGNNNVSADAEEGNAAGRSVENEETREPDIAKYTESQQRDNTVAVEEALQ 1079
Query: 89 DSFEVKLEQEL 99
DS K E ++
Sbjct: 1080 DSRNAKTEMDM 1090
>At3g15560 hypothetical protein
Length = 471
Score = 28.9 bits (63), Expect = 0.44
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 41 EIDEEDVEDHVQVNFVSGNHNKMNIADQDL-AQLTEKKNNPCGFQASIKDSFEVKLEQEL 99
++DEE+V+ +Q + N +K++ + DL Q E NN + + S ++ +L
Sbjct: 335 KVDEEEVDLKLQAKEANNNTSKVDEEEVDLQLQAKETNNNTSKVEIRTESSRRSRMSFDL 394
Query: 100 NGLRQKAG 107
+K+G
Sbjct: 395 KNTPEKSG 402
>At1g32830 putaive protein on FARE2.4 (cds2)
Length = 707
Score = 28.5 bits (62), Expect = 0.57
Identities = 20/73 (27%), Positives = 36/73 (48%), Gaps = 13/73 (17%)
Query: 32 VDEDGDEEME-----IDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNP--CGFQ 84
+ + GDEEME ++EE E+ + +H+ N+ + TEK+ NP C +
Sbjct: 395 IPKQGDEEMEGEEEKLEEEGKEEEEEKVEYRDHHSTCNVEE------TEKQENPKQCDEE 448
Query: 85 ASIKDSFEVKLEQ 97
++ E K+E+
Sbjct: 449 MEREEGKEEKVEE 461
>At1g02540 hypothetical protein
Length = 290
Score = 28.5 bits (62), Expect = 0.57
Identities = 16/73 (21%), Positives = 37/73 (49%), Gaps = 11/73 (15%)
Query: 33 DEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDSFE 92
+E+GD++ I ++ +E H+Q+ +H + DQ++ + + N I D E
Sbjct: 121 EEEGDDDSAIQQQHLEIHLQLQ----DHGSRSTTDQNMEEYANELEN-------ILDEEE 169
Query: 93 VKLEQELNGLRQK 105
+ + + G++Q+
Sbjct: 170 EEDDDDDRGIQQQ 182
>At5g14270 kinase - like protein
Length = 688
Score = 28.1 bits (61), Expect = 0.74
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 9/48 (18%)
Query: 36 GDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNN--PC 81
GD+E+EID D+ DH ++ D+ L ++ KK++ PC
Sbjct: 327 GDDEIEIDINDLSDHALFQL-------RDLLDEHLREIQNKKSSVEPC 367
>At4g26110 nucleosome assembly protein I-like protein
Length = 372
Score = 27.7 bits (60), Expect = 0.97
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 32 VDEDGDEEMEIDEEDVED 49
+DED DEE E DEED +D
Sbjct: 315 IDEDEDEEDEEDEEDDDD 332
>At3g24660 putative kinase-like protein TMKL1 precursor
Length = 674
Score = 27.7 bits (60), Expect = 0.97
Identities = 17/62 (27%), Positives = 30/62 (47%)
Query: 34 EDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDSFEV 93
E+GDEE EI E++ + V F G + ++ Q+ EK + ++A + D +
Sbjct: 339 EEGDEEDEIGEKEGGEGKLVVFQGGENLTLDDVLNATGQVMEKTSYGTVYKAKLSDGGNI 398
Query: 94 KL 95
L
Sbjct: 399 AL 400
>At5g24030 unknown protein
Length = 635
Score = 27.3 bits (59), Expect = 1.3
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 14 KSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDL 70
KS+ L + + SSL +GD++ ++ H+ SG+H N A L
Sbjct: 121 KSVKFLSQPMTKVSSLYIESGNGDDDRRQSHDNHHHHLHRQHQSGHHQNQNQAANKL 177
>At3g57180 unknown protein
Length = 637
Score = 27.3 bits (59), Expect = 1.3
Identities = 10/31 (32%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 32 VDEDGDEEMEIDEEDVEDHVQVNFVSGNHNK 62
VD+D DEE E ++++++D ++ N + G++++
Sbjct: 143 VDDDADEEEEGEDDEMDDEIK-NAIEGSNSE 172
>At2g12720 putative protein
Length = 819
Score = 27.3 bits (59), Expect = 1.3
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 32 VDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNN 79
VDE D+E +EED E + +F + + D+D A E KNN
Sbjct: 172 VDEASDKEASDEEEDDEFSSRFDFFDDSDGASS-DDEDFAVYGEPKNN 218
>At5g11240 unknown protein
Length = 615
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 4/32 (12%)
Query: 38 EEMEIDEEDVEDHVQVNFVSGNHNKMNIADQD 69
+E E +EEDVEDH F N N+ +++ D
Sbjct: 577 DESEDEEEDVEDH----FYGENDNESDLSSDD 604
>At4g26660 putative protein
Length = 806
Score = 26.9 bits (58), Expect = 1.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 27 SSLCCVDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQAS 86
+S C + D M D+EDV + GNH ++ D D +QL + + G S
Sbjct: 225 ASASCYEADS---MSGDDEDVCSEDLEKPMHGNHKDVDFVDNDPSQLDNVEFDTTGSGIS 281
Query: 87 IK 88
I+
Sbjct: 282 IR 283
>At3g58380 putative protein
Length = 307
Score = 26.9 bits (58), Expect = 1.7
Identities = 18/66 (27%), Positives = 37/66 (55%), Gaps = 6/66 (9%)
Query: 41 EIDEEDVED-HVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDSFEVKLEQEL 99
E+ + D+++ + V FVS K++ ++ L ++ EKK N +A ++ ++E++L
Sbjct: 216 ELSDTDLDEASIAVLFVSQGGFKVDWLEKKLKEVKEKKKNVDNGKARLQ-----QIEEDL 270
Query: 100 NGLRQK 105
L QK
Sbjct: 271 QKLNQK 276
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,844,026
Number of Sequences: 26719
Number of extensions: 121076
Number of successful extensions: 736
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 127
length of query: 113
length of database: 11,318,596
effective HSP length: 89
effective length of query: 24
effective length of database: 8,940,605
effective search space: 214574520
effective search space used: 214574520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147538.7