BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.6 + phase: 0
(80 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60540 transport protein subunit - like 132 4e-32
At2g45070 putative transport protein SEC61 beta-subunit 130 9e-32
At5g60460 protein transport protein subunit - like 97 1e-21
At5g49100 unknown protein 31 0.096
At4g36230 putative glycine-rich cell wall protein 30 0.16
At2g26240 unknown protein 30 0.28
At5g55750 unknown protein 29 0.37
At3g07050 GTPase like protein 28 0.63
At2g28670 putative disease resistance response protein 28 0.63
At4g11300 unknown protein 28 0.82
At1g16400 cytochrome P450-like protein (At1g16400) 28 1.1
At5g14850 dolichyl-phosphate-mannose-glycolipid alpha-mannosyltr... 27 1.8
At4g30450 glycine-rich protein 27 1.8
At3g28780 histone-H4-like protein 27 1.8
At1g17070 tuftelin-interacting-like protein 27 2.4
At5g46730 unknown protein 26 3.1
At5g07540 glycine-rich protein atGRP-6 26 3.1
At4g22020 glycine-rich protein 26 3.1
At2g21660 glycine-rich RNA binding protein 26 3.1
At2g05580 unknown protein 26 3.1
>At3g60540 transport protein subunit - like
Length = 81
Score = 132 bits (331), Expect = 4e-32
Identities = 67/75 (89%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGAS-GGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
+GGGAPQRGSAAATASMRRRK AGG +S GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61
Query: 62 FIAFVAVLHVVGKLY 76
FIAFVAVLHV+GKLY
Sbjct: 62 FIAFVAVLHVMGKLY 76
>At2g45070 putative transport protein SEC61 beta-subunit
Length = 82
Score = 130 bits (328), Expect = 9e-32
Identities = 67/78 (85%), Positives = 71/78 (90%), Gaps = 4/78 (5%)
Query: 3 LGGGAPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVM 58
+G GAPQRGSAAATASMRRRK GGGASGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61
Query: 59 SIGFIAFVAVLHVVGKLY 76
SIGFIAFVAVLHV+GKLY
Sbjct: 62 SIGFIAFVAVLHVMGKLY 79
>At5g60460 protein transport protein subunit - like
Length = 109
Score = 97.1 bits (240), Expect = 1e-21
Identities = 53/84 (63%), Positives = 61/84 (72%), Gaps = 8/84 (9%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGG--ASGGAAGT------MLQFYTDDAPGLKISPNVVL 56
G A RGSAAATA MRRR+ GGG +SGG +G ML+FYTDDAPGLKISP VVL
Sbjct: 22 GLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPTVVL 81
Query: 57 VMSIGFIAFVAVLHVVGKLYLREA 80
+MS+ FI FV LHV GKLYL ++
Sbjct: 82 IMSLCFIGFVTALHVFGKLYLHKS 105
>At5g49100 unknown protein
Length = 396
Score = 31.2 bits (69), Expect = 0.096
Identities = 13/42 (30%), Positives = 26/42 (60%)
Query: 12 SAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPN 53
S++A++SM +R GGG+S G + D +P ++++P+
Sbjct: 193 SSSASSSMSKRVVGGGGSSSNRNGIDVIVEEDGSPNIEVTPS 234
>At4g36230 putative glycine-rich cell wall protein
Length = 221
Score = 30.4 bits (67), Expect = 0.16
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG G S +R K++GGG GG G
Sbjct: 109 GGGGEGNGGNGKDNSHKRNKSSGGGGGGGGGG 140
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG G+ + R + + GGG GG G
Sbjct: 110 GGGEGNGGNGKDNSHKRNKSSGGGGGGGGGGG 141
Score = 27.7 bits (60), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG G + S R R GGG GG G
Sbjct: 134 GGGGGGGGGGSGNGSGRGRGGGGGGGGGGGGG 165
Score = 24.6 bits (52), Expect = 9.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG G + + R GGG GG G
Sbjct: 132 GGGGGGGGGGGGSGNGSGRGRGGGGGGGGGGG 163
>At2g26240 unknown protein
Length = 108
Score = 29.6 bits (65), Expect = 0.28
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 29 ASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKLYLR 78
A GG+A YT+ PG N VL SIG + A+ ++G YLR
Sbjct: 36 AGGGSAALFYYVYTE-LPG-----NPVLASSIGIVGSAALTGMMGSRYLR 79
>At5g55750 unknown protein
Length = 175
Score = 29.3 bits (64), Expect = 0.37
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 26 GGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAF 65
GGGA GG G+ + +Y+ P + +LV++ FI F
Sbjct: 140 GGGAEGGTTGSAMAYYSSSIPVYVL----MLVLANAFIVF 175
>At3g07050 GTPase like protein
Length = 582
Score = 28.5 bits (62), Expect = 0.63
Identities = 17/63 (26%), Positives = 30/63 (46%)
Query: 6 GAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAF 65
G P G ++ S++R GA+ G ++ + + D L P VV++ S G A
Sbjct: 260 GLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQEVHLDKNVKLLDCPGVVMLKSSGNDAS 319
Query: 66 VAV 68
+A+
Sbjct: 320 IAL 322
>At2g28670 putative disease resistance response protein
Length = 447
Score = 28.5 bits (62), Expect = 0.63
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTD 43
ALGGG G A GGGAS G T++ F D
Sbjct: 183 ALGGGGAGAGPALGGGVAGSGSALGGGASAGPDNTLVFFMHD 224
>At4g11300 unknown protein
Length = 371
Score = 28.1 bits (61), Expect = 0.82
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG+ +R S +S RR G GG AG
Sbjct: 173 GGGSGRRSSTDQWSSFGRRSGGSSGGGGGGAG 204
>At1g16400 cytochrome P450-like protein (At1g16400)
Length = 537
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 48 LKISPNVVLVMSIGFIAFVAVLHVVGKLYLR 78
+KIS N + +GFI F+A + ++G+++ R
Sbjct: 3 MKISFNTCFQILLGFIVFIASITLLGRIFSR 33
>At5g14850 dolichyl-phosphate-mannose-glycolipid
alpha-mannosyltransferase like protein
Length = 548
Score = 26.9 bits (58), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 2/53 (3%)
Query: 19 MRRRKTAGGGASGGAAGTMLQFYTD-DAPGLKI-SPNVVLVMSIGFIAFVAVL 69
+R+RK AGG GGA G + + D+ G +I SP + + + F A+L
Sbjct: 3 IRKRKNAGGDGDGGADGASVNVGDEPDSFGGRIGSPRRIFLFCLAFRVVNALL 55
>At4g30450 glycine-rich protein
Length = 107
Score = 26.9 bits (58), Expect = 1.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGT 36
G G+ R S+++++S + GG++G +AG+
Sbjct: 63 GSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGS 95
>At3g28780 histone-H4-like protein
Length = 614
Score = 26.9 bits (58), Expect = 1.8
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 5/48 (10%)
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGA--SGGAAGTMLQFYTDDAPG 47
A GG + S +TA+ ++A GG+ +GGA+G YTD G
Sbjct: 497 AAAGGVSESSSGGSTAAGGTSESASGGSATAGGASGGT---YTDSTGG 541
Score = 26.6 bits (57), Expect = 2.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAA 34
A G G+AAA S +T G ASGGAA
Sbjct: 255 AAAGETASGGAAAADTSGGSAETGGESASGGAA 287
Score = 26.2 bits (56), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (55%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAGT 36
GGA AA+ AS + +G ASGG+A T
Sbjct: 284 GGAASGAGAASGASAKTGGESGEAASGGSAET 315
Score = 25.8 bits (55), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGT 36
A GG G AA++ S+ + G SGG+A T
Sbjct: 375 AASGGESASGGAASSGSVESGGESTGATSGGSAET 409
>At1g17070 tuftelin-interacting-like protein
Length = 849
Score = 26.6 bits (57), Expect = 2.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTM 37
ALG R A + +R GGGA GG T+
Sbjct: 154 ALGKKIADRAKMRGKAKVEKRGQEGGGAKGGKKNTL 189
>At5g46730 unknown protein
Length = 268
Score = 26.2 bits (56), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 5/32 (15%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGGA G A+ A GGG GGAAG
Sbjct: 91 GGGAASSGGYASGAG-----EGGGGGYGGAAG 117
>At5g07540 glycine-rich protein atGRP-6
Length = 244
Score = 26.2 bits (56), Expect = 3.1
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 2/45 (4%)
Query: 5 GGAPQRGSAAATASMRRRKTAGG--GASGGAAGTMLQFYTDDAPG 47
GGA G A+ + GG GASGGA+G + D PG
Sbjct: 173 GGASGGGPGGASGGGPGGASGGGPGGASGGASGDKPEGAPGDKPG 217
Score = 25.8 bits (55), Expect = 4.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGA G AS A GGASGGA+G
Sbjct: 135 GGASGGGDKPGGASGGGPGGASGGASGGASG 165
Score = 25.4 bits (54), Expect = 5.3
Identities = 13/31 (41%), Positives = 16/31 (50%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GG + G A+ A GGASGGA+G
Sbjct: 139 GGGDKPGGASGGGPGGASGGASGGASGGASG 169
Score = 25.0 bits (53), Expect = 6.9
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GG G A+ AS A GGASGG G
Sbjct: 150 GGPGGASGGASGGASGGASGGASGGASGGGPG 181
>At4g22020 glycine-rich protein
Length = 396
Score = 26.2 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG + G A + AGGG SG A G
Sbjct: 219 GGGGGEGGGANGGSGHGSGSGAGGGVSGAAGG 250
>At2g21660 glycine-rich RNA binding protein
Length = 176
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG G + R+ GGG SGG G
Sbjct: 106 GGGGGYSGGGGSYGGGGGRREGGGGYSGGGGG 137
Score = 24.6 bits (52), Expect = 9.0
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG RG + RR+ GGG GG G
Sbjct: 135 GGGYSSRGGGGGSYGGGRRE-GGGGYGGGEGG 165
>At2g05580 unknown protein
Length = 302
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG Q G +K GGG GG G
Sbjct: 111 GGGGGQGGQKGGGGGQGGQKGGGGGGQGGQKG 142
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,667,084
Number of Sequences: 26719
Number of extensions: 58945
Number of successful extensions: 537
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 170
length of query: 80
length of database: 11,318,596
effective HSP length: 56
effective length of query: 24
effective length of database: 9,822,332
effective search space: 235735968
effective search space used: 235735968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147537.6