BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.1 + phase: 0 /pseudo
         (1265 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g43670 protein transport protein SEC23                              30  8.8

>At5g43670 protein transport protein SEC23
          Length = 794

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 636 SCSLMSAQNYNRALACVAFLVMTWNTKDIVVGIQSPTDYASHVMLLFRKTPCSPLFLHFI 695
           + S+M+    NRA  C A  V+TW    ++       DY       FR TP   L+  F+
Sbjct: 556 AASVMARLAINRAEECHARDVITWLDNGLIRFASRFGDYIQEDPSSFRLTPNFSLYPQFM 615

Query: 696 ILLALNHFISL 706
             L  + F+ +
Sbjct: 616 FYLRRSQFLDV 626


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.351    0.158    0.516 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,983,902
Number of Sequences: 26719
Number of extensions: 843023
Number of successful extensions: 2941
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2941
Number of HSP's gapped (non-prelim): 1
length of query: 1265
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1154
effective length of database: 8,352,787
effective search space: 9639116198
effective search space used: 9639116198
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 66 (30.0 bits)