BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147536.4 + phase: 0 /pseudo
(805 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 219 6e-57
At2g31080 putative non-LTR retroelement reverse transcriptase 202 8e-52
At4g15590 reverse transcriptase like protein 186 6e-47
At2g07730 putative non-LTR retroelement reverse transcriptase 162 5e-40
At1g47910 reverse transcriptase, putative 158 1e-38
At3g30570 putative reverse transcriptase 157 2e-38
At2g17610 putative non-LTR retroelement reverse transcriptase 156 4e-38
At2g11240 pseudogene 155 8e-38
At2g41580 putative non-LTR retroelement reverse transcriptase 154 1e-37
At4g10830 putative protein 153 4e-37
At2g01840 putative non-LTR retroelement reverse transcriptase 152 6e-37
At2g17910 putative non-LTR retroelement reverse transcriptase 152 7e-37
At2g16680 putative non-LTR retroelement reverse transcriptase 150 2e-36
At4g09710 RNA-directed DNA polymerase -like protein 150 4e-36
At2g31520 putative non-LTR retroelement reverse transcriptase 146 5e-35
At2g25550 putative non-LTR retroelement reverse transcriptase 145 7e-35
At3g45550 putative protein 144 1e-34
At2g45230 putative non-LTR retroelement reverse transcriptase 141 2e-33
At2g15540 putative non-LTR retroelement reverse transcriptase 138 1e-32
At2g05200 putative non-LTR retroelement reverse transcriptase 136 5e-32
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 219 bits (557), Expect = 6e-57
Identities = 98/219 (44%), Positives = 148/219 (66%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ W+ +E+ L P ++ I C+ S +++WN
Sbjct: 1100 MRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWN 1159
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G+KT+ F P RG+RQGDPLSPYLFV+C+ERL H+I + + WKP+++ + GP +SH+
Sbjct: 1160 GEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHIC 1219
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEASI+Q + L+ FC +SGQK++ EK+++YFSKNV L + I + +G
Sbjct: 1220 FADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESG 1279
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
+LGKYLG I R ++ F +I + ++L+GW
Sbjct: 1280 MKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGW 1318
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 202 bits (513), Expect = 8e-52
Identities = 92/219 (42%), Positives = 141/219 (64%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ W+F++E L I ++ S ++WN
Sbjct: 424 MRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWN 483
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G++T++F P+RG+RQGDPLSPYLFV+C+ERL H+I V WKP+ V G +SH+
Sbjct: 484 GERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVC 543
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEAS+ Q + L+ FC++SGQK++ EK++++FS NV + + I + +G
Sbjct: 544 FADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESG 603
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG I R ++ F ++ ++ +L+GW
Sbjct: 604 IGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGW 642
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 186 bits (471), Expect = 6e-47
Identities = 89/219 (40%), Positives = 130/219 (58%), Gaps = 17/219 (7%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ W+F+ E L IK I C++ ++WN
Sbjct: 376 MRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWN 435
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G+KT++F P RG+RQGDP+SPYLFV+C+ERL H I V WK + + + GP +SH+
Sbjct: 436 GEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVC 495
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADDL+LFAEAS+ QK++ EK++++FS NV L I TG
Sbjct: 496 FADDLILFAEASV-----------------AQKVSLEKSKIFFSNNVSRDLEGLITAETG 538
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG + R ++ F ++ ++ ++LSGW
Sbjct: 539 IGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGW 577
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 162 bits (411), Expect = 5e-40
Identities = 82/219 (37%), Positives = 122/219 (55%), Gaps = 18/219 (8%)
Query: 1 MSKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
M + KG K +M +++DLEKAYDR+ WNF++E L+ I ++ S ++WN
Sbjct: 274 MRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWN 333
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G KT++F P+RG+RQGDPLSPYLFV+C+ERL H+I V + WKPM
Sbjct: 334 GGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPM------------- 380
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
L EAS+ Q + L+ FC++SGQ ++ EK+++ FS NV + I +G
Sbjct: 381 -----ALSCEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVSRDMERLISGESG 435
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LGKYLG I R ++ ++ + + L+GW
Sbjct: 436 IGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGW 474
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 158 bits (399), Expect = 1e-38
Identities = 80/213 (37%), Positives = 122/213 (56%)
Query: 10 FMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYP 69
FM I+ D+ KAYD++ WNF+E L + F K I I CI+T+ YK++ NG P
Sbjct: 354 FMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIP 413
Query: 70 SRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFA 129
RG+RQGDPLSPYLF++C E L I + ++V P +SHLLFADD L F
Sbjct: 414 ERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFC 473
Query: 130 EASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGK 189
+A+ EQ +L L + SGQ+IN K+ + F V++ ++ DI G + + +G
Sbjct: 474 KANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGS 533
Query: 190 YLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
YLG + G + F+ + +++Q++++GW K
Sbjct: 534 YLGLPESLGGSKTKVFSFVRDRLQSRINGWSAK 566
>At3g30570 putative reverse transcriptase
Length = 1099
Score = 157 bits (397), Expect = 2e-38
Identities = 81/200 (40%), Positives = 118/200 (58%), Gaps = 16/200 (8%)
Query: 5 KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
KG+K M ++ DLEKAYDR+ W+F+E+ L + PS ++WNG++
Sbjct: 590 KGHKGCMLLKFDLEKAYDRVRWDFLEDTLEIAEGPSM--------------SLLWNGEQK 635
Query: 65 ETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADD 124
E F +G+RQGD LS YLFV+CMERL H+I + WKP+ + + GP +SH+ FA D
Sbjct: 636 ELFKARQGLRQGDLLSLYLFVLCMERLCHLIDGAIAGKRWKPICLSQSGPKLSHICFAYD 695
Query: 125 LLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQV 184
L+LFAEAS+ Q + L+ C +SGQK++ EK+++YFS NV L + I +
Sbjct: 696 LILFAEASVAQVRVIQSVLEKCCIASGQKVSLEKSKIYFSDNVSRELGQQISNES--ESF 753
Query: 185 NNLGKYLGANIAPGRTSRGH 204
N++G+ N PG S H
Sbjct: 754 NSVGRVERQNFEPGGKSDAH 773
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 156 bits (395), Expect = 4e-38
Identities = 75/214 (35%), Positives = 120/214 (56%)
Query: 10 FMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYP 69
F+ ++D+ KA+D++ W F+E + + F K I CI+T +Y I+ NG P
Sbjct: 25 FVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIP 84
Query: 70 SRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFA 129
RGIRQGDP+SPYL+++C E LS +I +++ + R GP ISHLLFA D L+F
Sbjct: 85 KRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFC 144
Query: 130 EASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGK 189
+A++E+ +++ L ++ ++SGQ +N +K+ + F K +D E + Q G + G+
Sbjct: 145 KATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGR 204
Query: 190 YLGANIAPGRTSRGHFNHIINKIQNKLSGWMFKL 223
YLG GR F+ I + K+ W KL
Sbjct: 205 YLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKL 238
>At2g11240 pseudogene
Length = 1044
Score = 155 bits (392), Expect = 8e-38
Identities = 77/212 (36%), Positives = 118/212 (55%)
Query: 8 KAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETF 67
+ FM ++ ++ KAYDR+ W+F++ + E F I I CI+T+SY + NG
Sbjct: 394 RCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAV 453
Query: 68 YPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLL 127
P RG+RQGDPLSP+LF+IC E LS + +RV + P ++HLLFADD +
Sbjct: 454 TPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIF 513
Query: 128 FAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNL 187
F + ++ L L + ++SGQ IN+ K+ + FS+ +H++ + Q G V L
Sbjct: 514 FCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGL 573
Query: 188 GKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
GKYLG GR R FN I+++I+ + W
Sbjct: 574 GKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSW 605
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 154 bits (390), Expect = 1e-37
Identities = 82/218 (37%), Positives = 121/218 (54%)
Query: 5 KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
K +K FM + D+ KAYDR+ W F++ L+ F S I + C+S++SY ++ NG
Sbjct: 294 KISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPF 353
Query: 65 ETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADD 124
P RG+RQGDPLSP+LFV+C E L HI+ + ++ GP ++HLLFADD
Sbjct: 354 GHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADD 413
Query: 125 LLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQV 184
LL +AS + ++HCL + SGQ IN EK+ + F V+ ++ I+ +G
Sbjct: 414 TLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTE 473
Query: 185 NNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + + F I K+Q++LSGW K
Sbjct: 474 GGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAK 511
>At4g10830 putative protein
Length = 1294
Score = 153 bits (386), Expect = 4e-37
Identities = 76/221 (34%), Positives = 123/221 (55%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
++ + ++++M ++ D+ KAYDR+ WNF+E + F IK I + +++Y ++ NG
Sbjct: 924 TRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNG 983
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
T P RGIRQGDPLSPYLF++C + L+H+I ++V + +R+G P ++HL F
Sbjct: 984 IPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQF 1043
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L F ++++ + D++ SGQKIN K+ + F V + + G
Sbjct: 1044 ADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGI 1103
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG GR R FN+II +++ + S W K
Sbjct: 1104 QSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1144
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 152 bits (385), Expect = 6e-37
Identities = 76/220 (34%), Positives = 126/220 (56%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
S+ + ++ ++ D+ KAYDR+ WNF+E+ +++ F + +K I C++++SY+++ NG
Sbjct: 924 SRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLING 983
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
+PSRGIRQGDPLSPYLF+ C E LS+++ + M++ + ISHLLF
Sbjct: 984 SPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLF 1043
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD L F AS + + + ++SGQKIN K+ + F + + R+ + + G
Sbjct: 1044 ADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGI 1103
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMF 221
+ V GKYLG GR F +I+ K++ + GW +
Sbjct: 1104 DNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAY 1143
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 152 bits (384), Expect = 7e-37
Identities = 80/216 (37%), Positives = 122/216 (56%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K M + D+ KAYDR+ W F+E + F +K I I +C++++SY ++ NG
Sbjct: 545 SKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGH 604
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSP LFV+C E L HI+ ++ ++ ++HLLFADD L
Sbjct: 605 IIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTL 664
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
L +A+ ++ ++ CL + Q SGQ IN K+ + F KNVD +++ I +G +
Sbjct: 665 LMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGG 724
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + R F I K+Q++L+GW K
Sbjct: 725 TGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 760
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 150 bits (380), Expect = 2e-36
Identities = 80/218 (36%), Positives = 117/218 (52%)
Query: 5 KGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKT 64
K +K FM + D+ KAYDR+ W+F++E L+ F K I I C+++++Y ++ NG
Sbjct: 517 KISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHF 576
Query: 65 ETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADD 124
P RGIRQGDP+SP+LFV+C E L HI+ S ++ GP ++HLLF DD
Sbjct: 577 GHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDD 636
Query: 125 LLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQV 184
L A+ ++ CL + SGQ IN EK+ + F VD + I +G +
Sbjct: 637 TQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLE 696
Query: 185 NNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG + + F +I K+Q+ LSGW K
Sbjct: 697 GGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDK 734
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 150 bits (378), Expect = 4e-36
Identities = 78/222 (35%), Positives = 120/222 (53%), Gaps = 2/222 (0%)
Query: 3 KMKGNKAF--MTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWN 60
++ G K + M I+ D+ KAYDR+ WNF++E LM F K I+ + C+ T+SY + N
Sbjct: 502 RVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLIN 561
Query: 61 GDKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLL 120
G + PSRG+RQGDPLSPYLF++C E LS + E +RV R P ++HLL
Sbjct: 562 GSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLL 621
Query: 121 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 180
FADD + F + + + + L + +SGQ IN K+ + FS ++ +
Sbjct: 622 FADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLR 681
Query: 181 FNQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
+ +GKYLG GR R F+ I+++I+ + W +
Sbjct: 682 IDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIR 723
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 146 bits (368), Expect = 5e-35
Identities = 75/213 (35%), Positives = 118/213 (55%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K +M ++ D+ KAYDR+ W+F+E + F +K I I + ++ Y ++ NG
Sbjct: 723 SKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGY 782
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSPYLF++C + LSH+I + S + +R+G P I+HL FADD L
Sbjct: 783 ITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSL 842
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
F +A++ + D++ SGQKIN +K+ + F V + + Q
Sbjct: 843 FFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGG 902
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
GKYLG GR + F +II++++ + S W
Sbjct: 903 GGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTW 935
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 145 bits (367), Expect = 7e-35
Identities = 75/213 (35%), Positives = 118/213 (55%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K +M ++ D+ KAYDR+ W+F+E + F +K I I + ++ Y ++ NG
Sbjct: 949 SKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGY 1008
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSPYLF++C + LSH+I + S + +R+G P I+HL FADD L
Sbjct: 1009 ITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSL 1068
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
F +A++ + D++ SGQKIN +K+ + F V + + Q
Sbjct: 1069 FFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGG 1128
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
GKYLG GR + F +II++++ + S W
Sbjct: 1129 GGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTW 1161
>At3g45550 putative protein
Length = 851
Score = 144 bits (364), Expect = 1e-34
Identities = 75/216 (34%), Positives = 118/216 (53%)
Query: 7 NKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTET 66
+K +M ++ D+ KAYDR+ W+F+E + F K I I + ++ Y ++ NG
Sbjct: 188 SKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGY 247
Query: 67 FYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLL 126
P+RGIRQGDPLSPYLF++C + LSH+I + S + +R+G P I+HL FADD L
Sbjct: 248 ISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSL 307
Query: 127 LFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNN 186
F +A++ + D++ SGQKIN +K+ + F V + +
Sbjct: 308 FFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGG 367
Query: 187 LGKYLGANIAPGRTSRGHFNHIINKIQNKLSGWMFK 222
GKYLG GR + FN+II++++ + + W K
Sbjct: 368 GGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAK 403
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 141 bits (355), Expect = 2e-33
Identities = 70/218 (32%), Positives = 122/218 (55%)
Query: 2 SKMKGNKAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNG 61
S K ++ F+ I+ D+ KAYDR+ W F+E+ + F I++I C+ ++ Y+++ NG
Sbjct: 562 SNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLING 621
Query: 62 DKTETFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLF 121
PSRG+RQGDPLSPYLFVIC E L ++ + + ++V R P ISHLLF
Sbjct: 622 TPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLF 681
Query: 122 ADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGF 181
ADD + + + + E ++ ++ + +SGQ++N K+ +YF K++ R + + G
Sbjct: 682 ADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGI 741
Query: 182 NQVNNLGKYLGANIAPGRTSRGHFNHIINKIQNKLSGW 219
+ G YLG + + +++ +++ K+ GW
Sbjct: 742 EREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGW 779
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 138 bits (347), Expect = 1e-32
Identities = 71/189 (37%), Positives = 110/189 (57%)
Query: 8 KAFMTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETF 67
K +M I+ D+ KAYDR+ W+F+ +++ F K + I CIS++SYKI+ NG
Sbjct: 515 KKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFI 574
Query: 68 YPSRGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLL 127
PSRGIRQGDP+SP+LF++C E L + D + +++ R P SHLLFADD L
Sbjct: 575 KPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLF 634
Query: 128 FAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNL 187
F +A Q ++ L ++ ++SGQ++N +K+ V F VDN +R I G ++ +
Sbjct: 635 FCKADPLQGKEIIDILRLYGEASGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGIHKDGAI 694
Query: 188 GKYLGANIA 196
L + +A
Sbjct: 695 RSKLSSVVA 703
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 136 bits (342), Expect = 5e-32
Identities = 73/209 (34%), Positives = 112/209 (52%)
Query: 11 MTIQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYPS 70
M ++ D+ KAYDR+ W+F+++ L F S I + C++++SY + NG P+
Sbjct: 466 MAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPT 525
Query: 71 RGIRQGDPLSPYLFVICMERLSHIIADQVESDYWKPMRVGRYGPLISHLLFADDLLLFAE 130
RG+RQGDPLSP LF++C E LS + +RV GP ++HLLFADD + F++
Sbjct: 526 RGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSK 585
Query: 131 ASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTGFNQVNNLGKY 190
+ E + + L + ++SGQ IN K+ V FS ++ + + + GKY
Sbjct: 586 SDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKY 645
Query: 191 LGANIAPGRTSRGHFNHIINKIQNKLSGW 219
LG GR R F II+KI+ K W
Sbjct: 646 LGLPEHFGRRKRDIFGAIIDKIRQKSHSW 674
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.363 0.164 0.635
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,772,625
Number of Sequences: 26719
Number of extensions: 613529
Number of successful extensions: 2273
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 77
length of query: 805
length of database: 11,318,596
effective HSP length: 107
effective length of query: 698
effective length of database: 8,459,663
effective search space: 5904844774
effective search space used: 5904844774
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC147536.4