BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147497.3 - phase: 0
(382 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 102 3e-22
At3g43830 putative protein 84 1e-16
At2g04670 putative retroelement pol polyprotein 83 2e-16
At3g31970 hypothetical protein 80 2e-15
At3g29480 hypothetical protein 78 9e-15
At4g03650 putative reverse transcriptase 77 2e-14
At4g03840 putative transposon protein 67 2e-11
At2g14650 putative retroelement pol polyprotein 67 2e-11
At2g06470 putative retroelement pol polyprotein 67 2e-11
At4g08100 putative polyprotein 65 8e-11
At3g42290 putative protein 64 1e-10
At4g10580 putative reverse-transcriptase -like protein 62 5e-10
At4g07850 putative polyprotein 62 5e-10
At3g43090 putative protein 60 2e-09
At3g43590 putative protein 59 3e-09
At5g52380 unknown protein 53 2e-07
At2g07700 putative retroelement pol polyprotein 53 2e-07
At1g75560 DNA-binding protein 52 5e-07
At5g36240 putative protein 51 1e-06
At4g36020 glycine-rich protein 51 1e-06
>At2g10780 pseudogene
Length = 1611
Score = 102 bits (255), Expect = 3e-22
Identities = 82/319 (25%), Positives = 139/319 (42%), Gaps = 27/319 (8%)
Query: 17 AQAVQQQPKVETG---SDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCS 73
++ V+ P+ G D +LE+ R F G DP A +W ++R F+ +C
Sbjct: 149 SEVVEVNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCP 208
Query: 74 EVQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEF 133
E + H L +A +WW+++ + D V ++A F+ EF +YFP + + + +
Sbjct: 209 EDYQRDIAVHFLEGDAHNWWLTV--EKRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAY 266
Query: 134 LELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVF 193
L+L QG+ +V EY +F L + E E ++ +F GLR +I+ +
Sbjct: 267 LDLVQGNRTVREYDEEFNRLRRYVGRELEE--EQAQLRRFIRGLRIEIRNHCLVRTFNSV 324
Query: 194 YELVNRCRIYQEDTKAHYKIMSERRGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHV 253
ELV R + +E + + E+ R + PADK K+K D+ +
Sbjct: 325 SELVERAAMIEEGIEEERYLNREK----APIRNNQSTKPADK-KRKF--DKVDNTKSDAK 377
Query: 254 EIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGD-----------IVCYNCNG 302
C CG K H S C + C RCG K H++ C + + C+ C
Sbjct: 378 TGECVTCG-KNH-SGTCWKAIGACGRCGSKDHAIQSCPKMEPGQSKVLGEETRTCFYCGK 435
Query: 303 EGHISSQCPEPKKTRTGGK 321
GH+ +CP+ + G+
Sbjct: 436 TGHLKRECPKLTAEKQAGQ 454
>At3g43830 putative protein
Length = 329
Score = 84.0 bits (206), Expect = 1e-16
Identities = 65/228 (28%), Positives = 94/228 (40%), Gaps = 26/228 (11%)
Query: 46 TFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLEQDDA 105
TF G DP A W +E F+ M+C + L EA +WW + EQ
Sbjct: 115 TFNGGTDPVKAYNWRNMLECKFKSMRCPVEFWRDLASCYLRGEAQEWW-ERVKQREQVGC 173
Query: 106 VVTWAMFKKEFLGRYFPEDVRGKKKIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETA 165
V W+ FK+EF RY PE+ +++FL L+QG +V +Y +F L F +
Sbjct: 174 VDQWSFFKEEFTRRYLPEETIDDLEMKFLRLQQGTKTVRKYEKEFHSLERF---ERRKRG 230
Query: 166 EFSKCIKFENGLRADIKRAIGYQQIRVFYELVNRC---RIYQEDTKAHYKIMSERRGKGQ 222
E KF +GLR DI+ + +LV + I E+ + +I E+ G
Sbjct: 231 EHELIHKFISGLRVDIRLCCHVRDFDNMIDLVEKAASLEIGLEEEARYKRIAQEKEAMG- 289
Query: 223 QNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVC 270
G KRR E+ CY+CG GH + C
Sbjct: 290 ----------------SYGQTGHSKRRCQ--EVTCYRCGVAGHIARDC 319
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 83.2 bits (204), Expect = 2e-16
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 20/273 (7%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
+A+ Q+ E +M+E R F P+ A W ++R F +C
Sbjct: 107 MAEVQQRAAVAEEVPSYLRMMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAE 166
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
+V H L +A WW S+ Q D ++WA F EF +YFP++ + + FLE
Sbjct: 167 YRVDLAVHFLEGDAHLWWRSVTARRRQAD--MSWADFVAEFNAKYFPQEALDRMEARFLE 224
Query: 136 LKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYE 195
L QG+ SV EY +F L + + + ++ +F GLR D++ Q
Sbjct: 225 LTQGEWSVREYDREFNRLLAYAGRGMED--DQAQMRRFLRGLRPDLRVQCRVSQYATKAA 282
Query: 196 LVNRCRIYQEDTKAHYKIMS---ERRGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAH 252
LV +ED + +S + + QQ P PA K+K R +
Sbjct: 283 LVETAAEVEEDLQRQVVGVSPAVQTKNTQQQVTPSKGGKPAQGQKRKWDHPSRAGQG--- 339
Query: 253 VEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGH 285
G G+ S CG D C ++GH
Sbjct: 340 --------GRAGYFS--CGSLDHTVADCTERGH 362
>At3g31970 hypothetical protein
Length = 1329
Score = 80.1 bits (196), Expect = 2e-15
Identities = 64/234 (27%), Positives = 97/234 (41%), Gaps = 7/234 (2%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
VA+ Q+ E +M+E R F G P+ A W +E F +C
Sbjct: 127 VAEVQQRAAVAEEVPSYLRMMEQLQRIGTRYFFGGTSPEEADSWKSRVEHNFGSSRCPAE 186
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
+V H L +A WW S+ Q A ++WA F EF +YFP++ + + FLE
Sbjct: 187 YRVDLAVHFLEGDAHLWWRSVTARRRQ--AHMSWADFVAEFNAKYFPQEALDRMEARFLE 244
Query: 136 LKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYE 195
L QG+ SV EY +F L + + + ++ +F GLR D++ Q
Sbjct: 245 LTQGERSVREYEREFNRLLVYAGRGMQD--DQAQMRRFLRGLRPDLRVRCRVLQYATKAA 302
Query: 196 LVNRCRIYQEDTKAHYKIMS---ERRGKGQQNRPKPYSAPADKGKQKMGDDRRP 246
LV +ED + +S + + QQ P PA K+K RP
Sbjct: 303 LVETAAEVEEDLQRQVVGVSPAVKPKKTQQQVAPSKGGKPAQGQKRKERGHLRP 356
>At3g29480 hypothetical protein
Length = 718
Score = 77.8 bits (190), Expect = 9e-15
Identities = 67/282 (23%), Positives = 100/282 (34%), Gaps = 61/282 (21%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
VA+ Q+ E +M+E R F G P+ A W +ER F +C
Sbjct: 20 VAEVQQRAAVAEEVPSYLRMMEQLQRIGIGYFSGGTSPEEADSWRSRVERNFGSSRCPVE 79
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
+V H L +A WW S+ Q A ++WA F EF +YFP++ + + FLE
Sbjct: 80 YRVDLAVHFLEGDAHLWWKSVTTRRRQ--ANMSWADFVAEFNAKYFPQEALDRMEAHFLE 137
Query: 136 LKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYE 195
L QG+ SV EY +F
Sbjct: 138 LTQGERSVREYDREF--------------------------------------------- 152
Query: 196 LVNRCRIYQEDTKAHYKIMSERRGKGQQNRPKPYSAPADKGKQKMGDDR---RPKRRDAH 252
NR +Y E ++ ++ Q AP+ GK G R P R
Sbjct: 153 --NRLLVYAECRSTRIPVVQPKKTHQQ-------VAPSKGGKPAQGQKRSWDHPSRAGQG 203
Query: 253 VEIVCYKCGEKGHKSNVCGR--DDRKCFRCGQKGHSLAECKR 292
C+ CG HK C + + R+ + C ++ H C +
Sbjct: 204 GRAGCFFCGSLDHKVADCTQRAETREYYHCRKRRHLRPNCPK 245
>At4g03650 putative reverse transcriptase
Length = 839
Score = 76.6 bits (187), Expect = 2e-14
Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 19/194 (9%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
V + Q+ E +M++ R F G P+ A W ++ER F +C
Sbjct: 125 VVEVQQRAAVAEEVPSYLRMMKQLQRIGTEYFSGGTSPEEADSWRSQVERNFGSSRCPAE 184
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
+V H L +A WW S+ Q D ++WA F EF +YFP + + + FLE
Sbjct: 185 YRVDLTVHFLEGDAHLWWRSVTARRRQAD--MSWADFMAEFNAKYFPREALDRMEARFLE 242
Query: 136 LKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYE 195
L QG SV EY KF L + + + ++ +F GLR +++
Sbjct: 243 LTQGVRSVREYDRKFNRLLVYAGRGMED--DQAQMRRFLRGLRPNLR------------- 287
Query: 196 LVNRCRIYQEDTKA 209
RCR+ Q TKA
Sbjct: 288 --VRCRVSQYATKA 299
>At4g03840 putative transposon protein
Length = 973
Score = 67.0 bits (162), Expect = 2e-11
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 18 QAVQQQPKVETG---SDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSE 74
+ V+ P+ G D +LE+ R F G DP A +W ++R F+ +C E
Sbjct: 115 EVVEVNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCPE 174
Query: 75 VQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFL 134
+ H L +A +WW+++ + D V ++A F+ EF +YFP + + + +L
Sbjct: 175 DYQRDIAVHFLERDAHNWWLTV--EKRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYL 232
Query: 135 ELKQGDMSVTEYAAKFVELATF 156
+L QG+ +V EY +F L +
Sbjct: 233 DLVQGNRTVREYDEEFNRLRRY 254
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 67.0 bits (162), Expect = 2e-11
Identities = 38/124 (30%), Positives = 56/124 (44%), Gaps = 2/124 (1%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
VA+ Q+ E +M+E R F G P+ A W +ER F +C
Sbjct: 125 VAEVQQRAAVAEEVPSYLRMMEQLQRIGTGYFSGGTSPEVADSWRSRVERNFGSSRCPAE 184
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
++ H L +A WW S+ Q D ++WA F EF +YFP++ + + FLE
Sbjct: 185 YRIDLAVHFLEGDAHLWWRSVTARRRQAD--ISWADFVAEFNAKYFPQEALDRMEAHFLE 242
Query: 136 LKQG 139
L QG
Sbjct: 243 LTQG 246
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 66.6 bits (161), Expect = 2e-11
Identities = 40/143 (27%), Positives = 71/143 (48%), Gaps = 5/143 (3%)
Query: 17 AQAVQQQPKVETG---SDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCS 73
++ V+ P+ G D +LE+ R F G DP A +W ++R F+ +C
Sbjct: 114 SEVVEVNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWRSRLKRNFKSTRCP 173
Query: 74 EVQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEF 133
E + H L +A +WW+++ + D V ++A F+ EF +YFP + + + +
Sbjct: 174 EDYQRDIAVHFLEGDAHNWWLTV--EKRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAY 231
Query: 134 LELKQGDMSVTEYAAKFVELATF 156
L+L QG+ +V EY +F L +
Sbjct: 232 LDLVQGNRTVREYDEEFNRLRRY 254
>At4g08100 putative polyprotein
Length = 1054
Score = 64.7 bits (156), Expect = 8e-11
Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 23/266 (8%)
Query: 45 PTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLE--Q 102
P F G +PD +W ++IE +F +C + KV+ A WW L+ +
Sbjct: 97 PAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSRRRTR 156
Query: 103 DDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLELKQGDMSVTEYAAKFVELATFYPHYSA 162
D + TW K R+ P + L QG +V EY F+E+ T
Sbjct: 157 DYPIKTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEY---FLEMETLMLRADL 213
Query: 163 ETAEFSKCIKFENGLRADIKRAIGYQQIRVFYELVNRCRIYQEDTKAHYKIMSERRGKGQ 222
+ + +F GL +I+ + Q E++++ ++++ K R+
Sbjct: 214 QEDGEAVMSRFMGGLNREIQDRLETQHYVELEEMLHKAVMFEQQIK--------RKNARS 265
Query: 223 QNRPKPYSA--PADKGKQKMG--DDRRPKRRDAHVEIVCYKCGEKGHKSNVCGR-DDRKC 277
+ YS+ P+ + ++K G +D +P + V++ KG V R D +C
Sbjct: 266 SHTKTNYSSGKPSYQKEEKFGYQNDSKPFVKPKPVDL-----DPKGKGKEVITRARDIRC 320
Query: 278 FRCGQKGHSLAECKRGDIVCYNCNGE 303
F+ H ++C I+ + NGE
Sbjct: 321 FKSQGLRHYASKCSNKRIMVHRDNGE 346
>At3g42290 putative protein
Length = 462
Score = 63.9 bits (154), Expect = 1e-10
Identities = 53/217 (24%), Positives = 89/217 (40%), Gaps = 38/217 (17%)
Query: 56 AQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKE 115
A W ++R F +C +V H L E+A WW S+ Q D ++WA F E
Sbjct: 163 ADSWRSRVKRNFSSSRCLMEYRVDLAVHFLEEDAHLWWKSVTARRRQAD--MSWADFVVE 220
Query: 116 FLGRYFPEDVRGKKKIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFEN 175
F +YF +D + ++ FLEL + SV EY +F + Y + + + ++ +F
Sbjct: 221 FNAKYFLQDELDRMEVRFLELTLVERSVWEYDREFNRVLV-YAGWGMKDGQ-AELRRFMR 278
Query: 176 GLRADIKRAIGYQQIRVFYELVNRCRIYQEDTKAHY-----KIMSERRGKGQQNRPKPYS 230
GLR D++ RCR+ Q KA ++ + GK Q + + ++
Sbjct: 279 GLRPDLR---------------VRCRMSQYALKAALVETAAEVAPRKGGKPMQGKKRSWN 323
Query: 231 APADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKS 267
+ G+ C+ CG HK+
Sbjct: 324 HLSRAGQGGRAG--------------CFSCGNLAHKN 346
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 62.0 bits (149), Expect = 5e-10
Identities = 59/254 (23%), Positives = 92/254 (35%), Gaps = 37/254 (14%)
Query: 16 VAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEV 75
VA+ Q+ E +M+E R F G P+ A W + R F +C
Sbjct: 121 VAEVQQRAAVAEEVLSYLRMMEQLQRIDTGYFSGGTSPEEADSWRSRVGRNFGSSRCPAE 180
Query: 76 QKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
+V H L +A WW S+ Q D ++WA F EF +YFP++
Sbjct: 181 YRVDLAVHFLEGDAHLWWRSVTARRRQTD--MSWADFVAEFKAKYFPQE----------- 227
Query: 136 LKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQIRVFYE 195
++ YA + +E + ++ +F GLR D++ Q
Sbjct: 228 ------ALDPYAGQGME------------DDQAQMRRFLRGLRPDLRVRCRVSQYATKAA 269
Query: 196 LVNRCRIYQEDTKAHYKIMSERRGKGQQNRPKPYSAPADKGKQKMGDDRR---PKRRDAH 252
LV +ED + +S Q + + P+ GK G R+ P R
Sbjct: 270 LVETAAEVEEDFQRQVVGVSP---VVQPKKTQQQVTPSKGGKPAQGQKRKWDHPSRAGQG 326
Query: 253 VEIVCYKCGEKGHK 266
C+ CG HK
Sbjct: 327 GRARCFSCGSLDHK 340
>At4g07850 putative polyprotein
Length = 1138
Score = 62.0 bits (149), Expect = 5e-10
Identities = 59/243 (24%), Positives = 90/243 (36%), Gaps = 21/243 (8%)
Query: 73 SEVQKVRFGTHMLAEEADDWWISLLPVLEQ--DDAVVTWAMFKKEFLGRYFPEDVRGKKK 130
+E KV+ + A WW ++ + DD++ TW K R+ P +
Sbjct: 91 TEANKVKVAATEFYDYALSWWDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHRELH 150
Query: 131 IEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKCIKFENGLRADIKRAIGYQQI 190
L QG+ +V EY F E+ T + + +F GL DI
Sbjct: 151 QRLRNLVQGNRTVEEY---FKEMETLMLRADVQEECEATMSRFMGGLNRDILDRFEVIHY 207
Query: 191 RVFYELVNRCRIYQEDTKAHYKIMSERRGKGQQNRPKP-YSAPADKGKQKMGDDRRPKRR 249
EL ++ ++++ K R K N KP Y G QK + +P +
Sbjct: 208 ENLEELFHKAVMFEKQIK-------RRSAKPSYNSSKPSYQREEKSGFQK---EYKPFVK 257
Query: 250 DAHVEIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQ 309
EI KG + V D KCF+C GH +EC I+ +GE +
Sbjct: 258 PKVEEI-----SSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKRIMIIRDSGEVESEDE 312
Query: 310 CPE 312
PE
Sbjct: 313 KPE 315
>At3g43090 putative protein
Length = 357
Score = 60.5 bits (145), Expect = 2e-09
Identities = 45/156 (28%), Positives = 66/156 (41%), Gaps = 9/156 (5%)
Query: 47 FKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEADDWWISLL---PVLEQD 103
F G DP A W K +E F +C + H L EEA WW +L PV
Sbjct: 131 FTGGIDPVKADDWRKLLENNFENARCPVEFQKDIIVHFLREEASHWWDGVLGNTPV---- 186
Query: 104 DAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLELKQGDMSVTEYAAKFVELATFYPHYSAE 163
V+ W F++EF ++FP++ + +F EL+Q V E + L+ F A
Sbjct: 187 QHVIFWEDFREEFNRKFFPQEAMDSLEDDFEELRQDTKKVRENERELSHLSRF--SVRAG 244
Query: 164 TAEFSKCIKFENGLRADIKRAIGYQQIRVFYELVNR 199
E S + GLR DI ++ +LV +
Sbjct: 245 RGEQSMIRRLMRGLRPDILTRCASREFFSMIDLVEK 280
>At3g43590 putative protein
Length = 551
Score = 59.3 bits (142), Expect = 3e-09
Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 31/88 (35%)
Query: 255 IVCYKCGEKGHKSNVCGR--------------------DDRKCFRCGQKGHSLAEC---- 290
+ CY+CG+ GH CGR + +C+RCG++GH EC
Sbjct: 285 VSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSS 344
Query: 291 -------KRGDIVCYNCNGEGHISSQCP 311
+ +CY CNG GH + +CP
Sbjct: 345 SISTSHGRESQTLCYRCNGSGHFARECP 372
Score = 55.5 bits (132), Expect = 5e-08
Identities = 26/71 (36%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
Query: 255 IVCYKCGEKGHKSNVCGRDDRK---CFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCP 311
+ CY CGE+GH S C ++ CF CG H +C +G CY C GH + CP
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGH-DCYICKKTGHRAKDCP 224
Query: 312 EPKKTRTGGKV 322
+ K + G V
Sbjct: 225 DKYKNGSKGAV 235
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 257 CYKCGEKGHKSNVC------GRDDRKCFRCGQKGHSLAECK-------RGDIVCYNCNGE 303
CY C + GH++ C G C RCG GH + CK D+ CY C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 304 GHISSQCPEP 313
GH+ C EP
Sbjct: 270 GHLC--CVEP 277
Score = 39.7 bits (91), Expect = 0.003
Identities = 28/114 (24%), Positives = 36/114 (31%), Gaps = 51/114 (44%)
Query: 256 VCYKCGEKGHKSNVC----GRDDRK---------------------------CFRCGQKG 284
VC +CG+ GH +C ++D K C+RCGQ G
Sbjct: 235 VCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLG 294
Query: 285 HSLAEC--------------------KRGDIVCYNCNGEGHISSQCPEPKKTRT 318
HS C R CY C EGH + +CP T
Sbjct: 295 HSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSIST 348
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 293 GDIVCYNCNGEGHISSQCPEPKKTR 317
G + CY+C +GH S CP P K R
Sbjct: 164 GWVSCYSCGEQGHTSFNCPTPTKRR 188
>At5g52380 unknown protein
Length = 268
Score = 53.1 bits (126), Expect = 2e-07
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 13/82 (15%)
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVC------GRDDRKCFRCGQKGHSLAECK-------R 292
P++ + +C +C +GH C + + C+ CG GHSL+ C
Sbjct: 90 PEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGT 149
Query: 293 GDIVCYNCNGEGHISSQCPEPK 314
C+ C G+GHIS CPE K
Sbjct: 150 KFASCFICKGQGHISKNCPENK 171
>At2g07700 putative retroelement pol polyprotein
Length = 543
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 18 QAVQQQPKVETGSDGTKMLENFLRNHP-PTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQ 76
Q +Q+ + E+ S L +R+ FKG ++ A KWL+++E F + +C +
Sbjct: 23 QQIQESQREESTSAKFLKLVMMMRDLGIRVFKGEHNTVVADKWLRDLEMNFEISRCPDNF 82
Query: 77 KVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRYFPEDVRGKKKIEFLE 135
K + + L ++A W S+ +++W F++EF +YFP + R + + +F++
Sbjct: 83 KRQIAVNFLDKDARIWRESV--TARNQGQMISWEAFRREFEKKYFPPEARDRLEQQFMK 139
>At1g75560 DNA-binding protein
Length = 257
Score = 52.0 bits (123), Expect = 5e-07
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 254 EIVCYKCGEKGHKSNVCGRDD------RKCFRCGQKGHSLAECKRGDIVCYNCNGEGHIS 307
E +C+ CG+ GH++ C D R C C ++GH A+C D C NC GHI+
Sbjct: 111 EGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC-TNDKACKNCRTSGHIA 169
Query: 308 SQC 310
C
Sbjct: 170 RDC 172
Score = 48.1 bits (113), Expect = 8e-06
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDI------VCYNCNGEGHISSQC 310
C+ C E GH ++ C + C CG+ GH +C D +C NC +GH+++ C
Sbjct: 95 CWNCREPGHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Query: 311 PEP---KKTRTGGKV 322
K RT G +
Sbjct: 154 TNDKACKNCRTSGHI 168
Score = 46.2 bits (108), Expect = 3e-05
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 207 TKAHYKIMSERRGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHK 266
++ ++ S R + + R + AP+ + +R P+R + + C C GH
Sbjct: 15 SRDRFRSRSPRDRRMRSERVSYHDAPSRR-------EREPRRAFSQGNL-CNNCKRPGHF 66
Query: 267 SNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKTRTGGK 321
+ C C CG GH AEC + C+NC GH++S C + GK
Sbjct: 67 ARDCSNVS-VCNNCGLPGHIAAECT-AESRCWNCREPGHVASNCSNEGICHSCGK 119
Score = 45.1 bits (105), Expect = 7e-05
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 256 VCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPE 312
+C C ++GH + C +D+ C C GH +C R D VC C+ GH++ CP+
Sbjct: 139 LCNNCFKQGHLAADC-TNDKACKNCRTSGHIARDC-RNDPVCNICSISGHVARHCPK 193
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 34/96 (35%)
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGD---------------------- 294
C C GH + C R+D C C GH C +GD
Sbjct: 159 CKNCRTSGHIARDC-RNDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSR 217
Query: 295 -----------IVCYNCNGEGHISSQCPEPKKTRTG 319
I+C+NC G GH + +CP + G
Sbjct: 218 MSRDREGVSAMIICHNCGGRGHRAYECPSARVADRG 253
Score = 32.7 bits (73), Expect = 0.34
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 220 KGQQNRPKPYSAPADKGKQKMGDDRRPKRRDA-HVEIVCYKCGEKGHKSNVC 270
KG N S D G Q+ G R + R+ I+C+ CG +GH++ C
Sbjct: 193 KGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYEC 244
>At5g36240 putative protein
Length = 254
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 255 IVCYKCGEKGHKSNVCGR--DDR---KCFRCGQKGHSLAECKRGDIVCY-------NCNG 302
+ CY+CG+ GH CGR DD CF CG++GH +C VC+ C G
Sbjct: 77 VSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQG 136
Query: 303 ----------------EGHISSQCPEPKK------TRTGGKVFALTGTQTPNEDRLIRGT 340
EGH QCP+ +R G + + +++ ++ R R
Sbjct: 137 PDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRL 196
Query: 341 CF 342
C+
Sbjct: 197 CY 198
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/101 (29%), Positives = 37/101 (35%), Gaps = 37/101 (36%)
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVC----GRDDRK------------------------- 276
P+ D E VC +CG GH +C +D K
Sbjct: 18 PRHNDDEAE-VCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWT 76
Query: 277 --CFRCGQKGHSLAECKR--GDIV---CYNCNGEGHISSQC 310
C+RCGQ GH+ C R D V C+ C EGH QC
Sbjct: 77 VSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 35.8 bits (81), Expect = 0.040
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 277 CFRCGQKGHSLAECK-------RGDIVCYNCNGEGHISSQCPEPKKTRT 318
C RCG GH + CK +I CY CN GH+ C EP T++
Sbjct: 28 CLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQS 74
Score = 33.5 bits (75), Expect = 0.20
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 262 EKGHKSNVCGRDDRKCFR----------CGQKGHSLAECKRGDIVCYNCNGEGHISSQCP 311
E+GH + C CF+ S ++ + +CY C G+GHI+ CP
Sbjct: 152 EEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCP 211
>At4g36020 glycine-rich protein
Length = 299
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 10/64 (15%)
Query: 257 CYKCGEKGHKSNVCG---RDDRKCFRCGQKGHSLAEC-KRG------DIVCYNCNGEGHI 306
CY CG GH + C + R C++CG GH +C +RG D CY C EGH
Sbjct: 232 CYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHF 291
Query: 307 SSQC 310
+ +C
Sbjct: 292 AREC 295
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/134 (26%), Positives = 49/134 (36%), Gaps = 25/134 (18%)
Query: 218 RGKGQQNRPKPYSAPADKGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCG------ 271
+G + + +AP +K + R R CY CGE GH S CG
Sbjct: 63 QGSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGG 122
Query: 272 ------RDDRKCFRCGQKGHSLAEC------------KRGDIVCYNCNGEGHISSQCPEP 313
R C+ CG GH +C K G+ CY C GH++ C +
Sbjct: 123 GGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQ- 181
Query: 314 KKTRTGGKVFALTG 327
K G + A+ G
Sbjct: 182 KSVGNGDQRGAVKG 195
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 257 CYKCGEKGHKSNVC-----GRDDRK---------CFRCGQKGHSLAECKR---------- 292
CY CG+ GH + C G D++ C+ CG GH +C +
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 293 --GDIVCYNCNGEGHISSQCPEPKKTRTG 319
G CY+C G GHI+ C ++ G
Sbjct: 226 GGGSGTCYSCGGVGHIARDCATKRQPSRG 254
Score = 45.4 bits (106), Expect = 5e-05
Identities = 21/71 (29%), Positives = 30/71 (41%), Gaps = 15/71 (21%)
Query: 257 CYKCGEKGHKSNVC------------GRDDRKCFRCGQKGHSLAEC---KRGDIVCYNCN 301
CY CG+ GH + C G C+ CG GH +C ++ CY C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 302 GEGHISSQCPE 312
G GH++ C +
Sbjct: 260 GSGHLARDCDQ 270
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,440,273
Number of Sequences: 26719
Number of extensions: 376526
Number of successful extensions: 1453
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 228
length of query: 382
length of database: 11,318,596
effective HSP length: 101
effective length of query: 281
effective length of database: 8,619,977
effective search space: 2422213537
effective search space used: 2422213537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147497.3