BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.9 - phase: 0 
         (125 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g32000 putative DNA topoisomerase III beta                         136  2e-33
At5g63920 DNA topoisomerase III                                        79  6e-16
At4g11800 putative protein                                             31  0.14
At2g03580 hypothetical protein                                         30  0.41
At5g12890 glucosyltransferase -like protein                            28  1.2
At4g23000 hypothetical protein                                         27  2.6
At3g50020 putative protein                                             27  3.4
At5g48140 polygalacturonase                                            26  4.5
At4g19960 potassium transporter-like protein                           26  4.5
At3g04670 unknown protein                                              26  4.5
At3g07830 polygalacturonase like protein                               25  7.7

>At2g32000 putative DNA topoisomerase III beta
          Length = 836

 Score =  136 bits (343), Expect = 2e-33
 Identities = 66/86 (76%), Positives = 74/86 (85%)

Query: 10  VAEKPSIALSIATVLSHGKMNTRRGSTEVHEFDGKFRKAPARFKVTSVIGHVFSVDFPGK 69
           VAEKPSIALSIA+VLSHG+M+TRRGSTEVHEFDG FR   A ++VTSVIGHVFSVDFP K
Sbjct: 40  VAEKPSIALSIASVLSHGQMSTRRGSTEVHEFDGMFRGFKAHYRVTSVIGHVFSVDFPEK 99

Query: 70  YQDWAATDPLDLFQAQVIKNESNPKL 95
           YQ+WA  DP DLF A +IK ESNPK+
Sbjct: 100 YQNWATIDPQDLFDAPIIKKESNPKV 125


>At5g63920 DNA topoisomerase III
          Length = 926

 Score = 79.0 bits (193), Expect = 6e-16
 Identities = 40/91 (43%), Positives = 56/91 (60%), Gaps = 3/91 (3%)

Query: 7   VLMVAEKPSIALSIATVLSHGKMNTRRGST---EVHEFDGKFRKAPARFKVTSVIGHVFS 63
           VL VAEKPS+A S+A +LS G   TR G +   ++ EFD      P R  +TSVIGH+  
Sbjct: 11  VLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGHLME 70

Query: 64  VDFPGKYQDWAATDPLDLFQAQVIKNESNPK 94
           ++F  +Y+ W + DP DL+QA V+K+    K
Sbjct: 71  LEFADRYRKWHSCDPADLYQAPVMKHVPEDK 101


>At4g11800 putative protein
          Length = 1012

 Score = 31.2 bits (69), Expect = 0.14
 Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 1/47 (2%)

Query: 73  WAATDPLDLFQAQVIKNES-NPKLVDVVIWYCGWIVTVKEKIYVLRV 118
           WA T PL + + + +KN+   P  +D+V WY G    + + ++ L V
Sbjct: 281 WALTHPLSVDKYEKLKNQQLKPDFLDMVPWYSGTSADLFKTVFDLLV 327


>At2g03580 hypothetical protein
          Length = 144

 Score = 29.6 bits (65), Expect = 0.41
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 87  IKNESNPKLVDVVIWYCGWIVTVKEKIYVLRVIF 120
           ++ E  PK+ D   WY  W   VK  +Y  R+I+
Sbjct: 5   MREEKRPKVFDNHDWYFVWKTCVKRPLYPWRIIY 38


>At5g12890 glucosyltransferase -like protein
          Length = 488

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 77  DPLDLFQAQVIKNESNPKLVDVVIWYCGWIVTVKEKIYVLRVIF 120
           +P   F  +++K E    ++ +  ++ GWI  V +++ V  VIF
Sbjct: 109 EPFRDFMTKILKEEGQSSVIVIGDFFLGWIGKVCKEVGVYSVIF 152


>At4g23000 hypothetical protein
          Length = 932

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 73  WAATDPLDLFQAQVIKNES-NPKLVDVVIWYCGWIVTVKEKIYVLRV 118
           WA   PL +   + +K +   P  +D+V WY G    + + ++ L V
Sbjct: 324 WALAHPLSVENYEKLKRQQMKPNFLDMVPWYSGTSADLFKTVFDLLV 370


>At3g50020 putative protein
          Length = 96

 Score = 26.6 bits (57), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 66  FPGKYQDWAATDPLDLFQAQVIKNESNPKLVDVVI 100
           FPG   DW   + +   +A+ I    NPK+V V+I
Sbjct: 26  FPGIKVDWPELNGVKGLEAKRIIEHDNPKVVVVII 60


>At5g48140 polygalacturonase
          Length = 395

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 2/41 (4%)

Query: 82  FQAQVIKNESNPKLVDVVIWYCGWIVTVKEKIYVLRVIFVS 122
           F+  ++KN SNP L+D    YC W    K+K   +++  +S
Sbjct: 285 FENILLKNVSNPILIDQE--YCPWNQCNKQKPSTIKLANIS 323


>At4g19960 potassium transporter-like protein
          Length = 842

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 95  LVDVVIWYCGWIVTVKEKIYVLRVIFVSLSF 125
           L+ +++W+C WI+ +   I+     FV LS+
Sbjct: 504 LIMLLVWHCHWILVL---IFTFLSFFVELSY 531


>At3g04670 unknown protein
          Length = 330

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 9/59 (15%)

Query: 43  GKFRKAPARFKVTSVIGHVF-------SVDFPGKYQDWAATDPLDLFQAQVIKNESNPK 94
           GKFR    +F+ +S   H+F         D  G Y    A +PL +  A  + NE  PK
Sbjct: 57  GKFRSTN-KFR-SSFPQHIFLESPICCGNDLSGDYTQVLAPEPLQMVPASAVYNEMEPK 113


>At3g07830 polygalacturonase like protein
          Length = 397

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 2/41 (4%)

Query: 82  FQAQVIKNESNPKLVDVVIWYCGWIVTVKEKIYVLRVIFVS 122
           F+  +++N SNP L+D    YC W    K+K   +++  +S
Sbjct: 286 FENIILRNVSNPILIDQE--YCPWNQCNKQKSSSIKLANIS 324


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,612,986
Number of Sequences: 26719
Number of extensions: 95958
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 11,318,596
effective HSP length: 87
effective length of query: 38
effective length of database: 8,994,043
effective search space: 341773634
effective search space used: 341773634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)