BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.13 + phase: 0 /pseudo
         (575 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g14180 hypothetical protein                                        169  3e-42
At3g23250 myb-related transcription factor like protein                31  1.6
At1g60540                                                              30  4.8

>At4g14180 hypothetical protein
          Length = 1268

 Score =  169 bits (429), Expect = 3e-42
 Identities = 98/197 (49%), Positives = 129/197 (64%), Gaps = 9/197 (4%)

Query: 38  RGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILK 97
           R L N  YQI YS EAE IIF L+N  EWDL S  IH  SLKWLFQQE+I  SL +QI K
Sbjct: 661 RSLQNERYQISYSLEAERIIFHLLNEYEWDLGSINIHLESLKWLFQQESISKSLIYQIQK 720

Query: 98  FCRNNNLEGDDM--IIGNSNQTVNVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDI 155
             R NNL G+++  + G+  Q       A+L+S  DNY A L + LL QLAE+E QE+D+
Sbjct: 721 ISR-NNLIGNEVHNVYGDGRQRSLTYWFAKLISEGDNYAATLLVNLLTQLAEKEEQENDV 779

Query: 156 ISVLNLMATMIHICPAASDQLSLHGIGTTIRTCC--FSTA----TFMSILVLVFNTLSSV 209
           IS+LNLM T++ I P AS+ LS++GIG+ I      FS +    +F ++L+LVFN L+SV
Sbjct: 780 ISILNLMNTIVSIFPTASNNLSMNGIGSVIHRLVSGFSNSSLGTSFRTLLLLVFNILTSV 839

Query: 210 HPKTLSTDQSWVAVTME 226
            P  L  D+SW AV+++
Sbjct: 840 QPAVLMIDESWYAVSIK 856



 Score = 37.7 bits (86), Expect = 0.017
 Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 2/83 (2%)

Query: 484  LTS*VLSKLQL*VKCCRKQMYTNNAQDGLPSEPIKKVLATSYDLGDVCWFLIDLMSPDTL 543
            L S  ++KL    + CRKQM+ N  +D    E +++ + + +D  + C +L+ LM  ++ 
Sbjct: 1159 LNSQQVTKLDRAFQECRKQMHRNGTRDETVEEQVQRKIPSIHDHSEFCNYLVHLMVSNSF 1218

Query: 544  --DMDSWGIHMDGKRLLEEIELF 564
                +S       K++L+E+E F
Sbjct: 1219 GHPSESETYTQKKKQILDEMEQF 1241


>At3g23250 myb-related transcription factor like protein
          Length = 285

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 12  LNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLI--NNGEWDLL 69
           L S D HN+ ++ L V  LV +    + LG+ N ++ +  E  +  F ++    GE DLL
Sbjct: 224 LYSQDEHNYVSNDLEVAGLVEIQQEFQNLGSANNEMIFDSEM-DFWFDVLARTGGEQDLL 282

Query: 70  S 70
           +
Sbjct: 283 A 283


>At1g60540 
          Length = 648

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 19/200 (9%)

Query: 63  NGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVNVQT 122
           NG+ + +  +I  + +K++  QE+II ++    + F    ++     +     +T+ V T
Sbjct: 182 NGQPENIYEQISRMVMKYIEPQESIILNVLSATVDFTTCESIRMSKQVDKTGERTLAVVT 241

Query: 123 LAEL--------VSSEDNYGARLFICLLAQLAEEEGQE-----------HDIISVLNLMA 163
            A++        V+++D      ++C+  ++ EE  +E           H ++S++N   
Sbjct: 242 KADMAPEGLLQKVTADDVSIGLGYVCVRNRIGEETYEEARMQEELLFRTHPMLSMINDEI 301

Query: 164 TMIHICPAASDQLSLHGIGTTIRTCCFSTATFMSILVLVFNTLSSVHPKTLSTDQSWVAV 223
             I +      Q+    I   +          M I VL FN L  V   T     S + +
Sbjct: 302 VGIPVLAQKLTQIQGMMISRCLPEIERKINVKMEISVLEFNKLPIVMASTGEALMSLMDI 361

Query: 224 TMESRKSLRHWHSFLDFTSF 243
              +++SL       DF+ +
Sbjct: 362 IGSAKESLLRILVHGDFSEY 381


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.349    0.152    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,322,016
Number of Sequences: 26719
Number of extensions: 422180
Number of successful extensions: 1646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 4
length of query: 575
length of database: 11,318,596
effective HSP length: 105
effective length of query: 470
effective length of database: 8,513,101
effective search space: 4001157470
effective search space used: 4001157470
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 63 (28.9 bits)