BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147483.13 - phase: 0 
         (208 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g15560 hypothetical protein                                         28  4.5
At4g00335 RING-H2 finger protein RHB1a                                 27  5.9
At2g30250 putative WRKY-type DNA binding protein                       27  7.7
At3g58500 phosphoprotein phosphatase 2A isoform 4                      27  10.0

>At1g15560 hypothetical protein
          Length = 399

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 88  TFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVVAK--DLYLKTSDVSNH 141
           T+ D +     E Y  LL    A+   F G  +++ PL + +   +Y++ + +S H
Sbjct: 229 TYVDEKARVIAEKYDELLQERMAQMQLFDGENSTMNPLTIEEKNKIYVQVAGISKH 284


>At4g00335 RING-H2 finger protein RHB1a
          Length = 190

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 118 PGTSLTPLVVAKDLYLKTSDVSNHLTTKSHIRGFTSKYLLEQATCQDALEAILALLIYGL 177
           P T   P  +  DL L     ++  + K  + G + + L   ATC+D  E+    L   +
Sbjct: 57  PDTFCAPAPLPYDLLLGRPQCTDSESIKGRMSGSSFETL---ATCEDLGESDCKTLASSV 113

Query: 178 ILFPSLDNFVDMNAIKI 194
           IL P   +F     +KI
Sbjct: 114 ILSPRKSDFSKHQGLKI 130


>At2g30250 putative WRKY-type DNA binding protein
          Length = 393

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 87  FTFPDFQVVPTLEAYSHLLDSPTAEKTPFTG 117
           FTF D+   P L + SH L SPT    P  G
Sbjct: 63  FTFSDYLDSPLLLSSSHSLISPTTGTFPLQG 93


>At3g58500 phosphoprotein phosphatase 2A isoform 4
          Length = 313

 Score = 26.6 bits (57), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 52  GFRLQYGGLLTILRTNVEEKLVHTLVQFYDPSFR 85
           G +++Y   +TILR N E + +  +  FYD   R
Sbjct: 106 GLKVRYPQRITILRGNHESRQITQVYGFYDECLR 139


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,534,117
Number of Sequences: 26719
Number of extensions: 184154
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 11,318,596
effective HSP length: 95
effective length of query: 113
effective length of database: 8,780,291
effective search space: 992172883
effective search space used: 992172883
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)