BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147482.6 + phase: 2 /pseudo
         (675 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g55220 spliceosomal - like protein                                  87  4e-17
At3g55200 spliceosomal - like protein                                  87  4e-17
At5g50330 putative protein                                             29  7.5
At4g15320 cellulose synthase like protein                              29  7.5

>At3g55220 spliceosomal - like protein
          Length = 1214

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)

Query: 485  CKYRWDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFG 524
            CKYR DENQLYIFADDCVPRWLTAS+H+DFDTMAGADKFG
Sbjct: 1010 CKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFG 1049



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)

Query: 640  LCEQFPTLPMDLQRKIADELDRTRGEILKKLEE 672
            LCEQFPTLPMDLQRKIADELDRT  EILKKLE+
Sbjct: 1176 LCEQFPTLPMDLQRKIADELDRTPAEILKKLED 1208


>At3g55200 spliceosomal - like protein
          Length = 1214

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)

Query: 485  CKYRWDENQLYIFADDCVPRWLTASYHIDFDTMAGADKFG 524
            CKYR DENQLYIFADDCVPRWLTAS+H+DFDTMAGADKFG
Sbjct: 1010 CKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFG 1049



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)

Query: 640  LCEQFPTLPMDLQRKIADELDRTRGEILKKLEE 672
            LCEQFPTLPMDLQRKIADELDRT  EILKKLE+
Sbjct: 1176 LCEQFPTLPMDLQRKIADELDRTPAEILKKLED 1208


>At5g50330 putative protein
          Length = 423

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/37 (37%), Positives = 23/37 (61%), Gaps = 1/37 (2%)

Query: 637 LLSLCEQFPTLPMD-LQRKIADELDRTRGEILKKLEE 672
           L++LC+Q P  P D +Q  +  EL ++ GEI +  +E
Sbjct: 100 LVTLCDQAPATPFDAIQLVLEKELGKSIGEIFETFDE 136


>At4g15320 cellulose synthase like protein
          Length = 828

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 604 MMLISSLIWRCI*GRIIHLCVEEIIWLIDPPIFLLSLCEQF 644
           ++L+ SL+W     RI+H+C    IWL+    FL   C  F
Sbjct: 30  LVLLFSLLWY----RILHMCENNTIWLV---AFLCESCFSF 63


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.360    0.160    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,602,367
Number of Sequences: 26719
Number of extensions: 510140
Number of successful extensions: 1770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 7
length of query: 675
length of database: 11,318,596
effective HSP length: 106
effective length of query: 569
effective length of database: 8,486,382
effective search space: 4828751358
effective search space used: 4828751358
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)