BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147435.7 + phase: 0
(1667 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 718 0.0
At1g48710 hypothetical protein 714 0.0
At3g60170 putative protein 683 0.0
At2g15650 putative retroelement pol polyprotein 683 0.0
At3g25450 hypothetical protein 624 e-178
At2g20460 putative retroelement pol polyprotein 585 e-167
At1g31210 putative reverse transcriptase 579 e-165
At2g05390 putative retroelement pol polyprotein 574 e-163
At1g70010 hypothetical protein 570 e-162
At2g16000 putative retroelement pol polyprotein 569 e-162
At3g59720 copia-type reverse transcriptase-like protein 564 e-160
At1g37110 536 e-152
At3g45520 copia-like polyprotein 528 e-150
At2g16670 putative retroelement pol polyprotein 527 e-149
At2g07550 putative retroelement pol polyprotein 523 e-148
At2g13930 putative retroelement pol polyprotein 517 e-146
At4g27210 putative protein 509 e-144
At1g26990 polyprotein, putative 507 e-143
At2g21460 putative retroelement pol polyprotein 503 e-142
At5g35820 copia-like retrotransposable element 501 e-141
>At3g61330 copia-type polyprotein
Length = 1352
Score = 718 bits (1854), Expect = 0.0
Identities = 376/983 (38%), Positives = 569/983 (57%), Gaps = 43/983 (4%)
Query: 673 INNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF- 731
I+NV+ + +K N+LS+ Q + GYD+ N ++ +++ IT ++ +N
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIR 450
Query: 732 SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQ 791
+D+A +C ++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C C
Sbjct: 451 NDIAQCLKMCY---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCL 506
Query: 792 KGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIK 851
GK K SF + +PLEL+H D+ GP+ SL S Y L+ +DD+SR TWV F+K
Sbjct: 507 LGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 852 SKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQ 911
K E+F F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 912 QNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKG 971
QNGVVERKNRT+ EMAR+M+ L K WAEAV + Y+ NR + + KT E + G
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 972 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 1031
R+P +S+ FG + + K D K+++ IF+GY SK Y++YN +T+ S
Sbjct: 687 RKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 1032 HVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNS 1091
++ FD+ S + + N ED E P+ E +E ++P T S
Sbjct: 747 NIVFDEEGEWDWNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIEES 803
Query: 1092 EAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSHFRQEESL 1151
+E +P+ ++ + +N + + +L
Sbjct: 804 SSERTPRFRSIQELYEVTENQENL----------------------------------TL 829
Query: 1152 IGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKL 1211
L + EP ++A+ W AM EE+ Q+ND W+L P IG KWV++ K
Sbjct: 830 FCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKK 889
Query: 1212 NEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKS 1271
N +GEV R KARLVA+GYSQ+ GIDY E FAPVARLE +RL++S A + ++QMDVKS
Sbjct: 890 NSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKS 949
Query: 1272 AFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFER 1331
AFLNG +EEEVY++QP G+ + V +LKK LYGLKQAPRAW R+ + + DF +
Sbjct: 950 AFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIK 1009
Query: 1332 GQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLG 1391
+ L+ + K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++LG
Sbjct: 1010 CPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLG 1069
Query: 1392 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1451
I++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++ +
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1129
Query: 1452 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1511
+GSL YLT +RPDIL++V + +R+ P +H A KRI RY+KGT N GL Y + DYK
Sbjct: 1130 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYK 1189
Query: 1512 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQL 1571
L+G+ D+D+ GD +RKSTSG ++G+ +W SKKQ + +ST EAEY++A +C
Sbjct: 1190 LVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHA 1249
Query: 1572 LWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILD 1630
+W+++ L++ + I+ DN +AI L+KNP+ H R+KHI+ ++H+IR+ V K +
Sbjct: 1250 IWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQ 1309
Query: 1631 IQFIDTEHQWADIFTKPLSVERF 1653
++++ T Q AD FTKPL E F
Sbjct: 1310 LEYVKTHDQVADFFTKPLKRENF 1332
Score = 81.6 bits (200), Expect = 3e-15
Identities = 67/299 (22%), Positives = 133/299 (44%), Gaps = 16/299 (5%)
Query: 44 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 163
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 224 KVHEMSLNEHETSKKSKSIA---LPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
+ +E E KK + IA L + ++ ++Y+ + G
Sbjct: 195 QAYE------EKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248
Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVDCPDLQKEKFKGKS 339
+ + K G K+ + C+NC K GH+ +C +KF+ K+
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306
>At1g48710 hypothetical protein
Length = 1352
Score = 714 bits (1843), Expect = 0.0
Identities = 377/987 (38%), Positives = 571/987 (57%), Gaps = 45/987 (4%)
Query: 673 INNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF- 731
I+NV+ + +K N+LS+ Q + GYD+ N ++ +++ IT ++ +N
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIR 450
Query: 732 SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQ 791
+D+A +C ++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C C
Sbjct: 451 NDIAQCLKMCY---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCL 506
Query: 792 KGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIK 851
GK K SF + + LEL+H D+ GP+ SL S Y L+ +DD+SR TWV F+K
Sbjct: 507 LGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 852 SKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQ 911
K E+F F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 912 QNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKG 971
QNGV ERKNRT+ EMAR+M+ L K WAEAV + Y+ NR + + KT E + G
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 972 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 1031
R+ +S+ FG + + K D K+++ IF+GY SK Y++YN +T+ S
Sbjct: 687 RKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 1032 HVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNS 1091
++ FD+ S + + N ED E P+ E +E ++P T S
Sbjct: 747 NIVFDEEGEWDWNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIEES 803
Query: 1092 EAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSHFRQEESL 1151
+E +P+ ++ + +N + + +L
Sbjct: 804 SSERTPRFRSIQELYEVTENQENL----------------------------------TL 829
Query: 1152 IGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKL 1211
L + EP +EA+ W AM EE+ Q+ND W+L P IG KWV++ K
Sbjct: 830 FCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKK 889
Query: 1212 NEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKS 1271
N +GEV R KARLVA+GY Q+ GIDY E FAPVARLE +RL++S A + ++QMDVKS
Sbjct: 890 NSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKS 949
Query: 1272 AFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFER 1331
AFLNG +EEEVY++QP G+ + V +LKK+LYGLKQAPRAW R+ + + DF +
Sbjct: 950 AFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIK 1009
Query: 1332 GQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLG 1391
+ L+ + K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++LG
Sbjct: 1010 CPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLG 1069
Query: 1392 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1451
I++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++ +
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1129
Query: 1452 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1511
+GSL YLT +RPDIL++V + +R+ P +H A KRI RY+KGT N GL Y + DYK
Sbjct: 1130 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYK 1189
Query: 1512 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQL 1571
L+G+ D+D+ GD +RKSTSG ++G+ +W SKKQ + +ST EAEY++A +C
Sbjct: 1190 LVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHA 1249
Query: 1572 LWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILD 1630
+W+++ L++ + I+ DN +AI L+KNP+ H R+KHI+ ++H+IR+ V K +
Sbjct: 1250 IWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQ 1309
Query: 1631 IQFIDTEHQWADIFTKPLSVERFDFIK 1657
++++ T Q ADIFTKPL +R DFIK
Sbjct: 1310 LEYVKTHDQVADIFTKPL--KREDFIK 1334
Score = 80.1 bits (196), Expect = 1e-14
Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 16/299 (5%)
Query: 44 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 163
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 224 KVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
+ +E E KK + I L + ++ ++Y+ + G
Sbjct: 195 QAYE------EKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248
Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVDCPDLQKEKFKGKS 339
+ + K G K+ + C+NC K GH+ +C +KF+ K+
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306
>At3g60170 putative protein
Length = 1339
Score = 683 bits (1763), Expect = 0.0
Identities = 386/1030 (37%), Positives = 588/1030 (56%), Gaps = 51/1030 (4%)
Query: 662 RKSTIGNSSISIN---------NVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKD 712
R S +G S+ + V+ V L++NLLS+ Q + G + C + +
Sbjct: 335 RMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPS 394
Query: 713 DKSITFKGKRVENVYKINFSDLADQKVVCLLS---MNDKKWVWHKRLGHANWRLISKISK 769
+I ++ + + + +CL + M+ + +WH R GH N + ++
Sbjct: 395 KGAIMETNMSGNRMFFL-LASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAH 453
Query: 770 LQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLY 829
++V GLP + + +C C GK + S K +S L+L+H D+ GP+ S
Sbjct: 454 KKMVIGLPILKATKE-ICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHS 512
Query: 830 GSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENE 889
G +Y L +DD++R TWV F+ K A F F ++ E + +R+D GGEF +
Sbjct: 513 GKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSN 572
Query: 890 PFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSC 949
F FC HGI + ++ TPQQNGV ERKNRT+ R+M+ E + K FW+EA S
Sbjct: 573 EFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSV 632
Query: 950 YIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLG 1009
+IQNR + T E + GR+P + YF FGC Y+ K D K+++ +FLG
Sbjct: 633 HIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLG 692
Query: 1010 YSERSKAYRVYNSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDS 1069
SE SKA+R+Y+ + + S V FD E +S +Q++ A E E D
Sbjct: 693 VSEESKAWRLYDPVMKKIVISKDVVFD--EDKSWDWDQADVEAKEVTLECGDEDD----- 745
Query: 1070 EKYTEVESSPEAEITPE---AESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFK--HKS 1124
EK +EV P A +P +++N + P + + S T++ P + +++
Sbjct: 746 EKNSEVVE-PIAVASPNHVGSDNNVSSSPILAPSSPAPSPVAAKVTRERRPPGWMADYET 804
Query: 1125 SHHEELIIGSKDSPRRTRSHFRQEESLIGLLSII----EPKTVEEALSDDGWILAMQEEL 1180
EE+ EE+L +L ++ +P ++A+ D W AM+ E+
Sbjct: 805 GEGEEI-----------------EENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEI 847
Query: 1181 NQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTET 1240
+N+ W+L P IG KWV++ KLNE GEV + KARLVA+GY+Q GIDYTE
Sbjct: 848 ESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEV 907
Query: 1241 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVY 1300
FAPVARL+ +R +L+ + ++Q+DVKSAFL+G ++EEVYV+QP GF VY
Sbjct: 908 FAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVY 967
Query: 1301 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1360
KL+K+LYGLKQAPRAWY R+ + +K +FER + TLF +T +ILIV +YVDD+IF
Sbjct: 968 KLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFT 1027
Query: 1361 STNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLED 1420
++ ++C EF K M EFEMS +G++K FLGI++ QS G+++ Q +Y +E+L +F +++
Sbjct: 1028 GSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDE 1087
Query: 1421 CKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPR 1480
+ P+ P L+K++ G VD+ +++ ++GSL+YLT +RPD+++ VCL +RF S+PR
Sbjct: 1088 SNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPR 1147
Query: 1481 ESHLTAVKRIFRYLKGTTNLGLLY--RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLG 1538
SH A KRI RYLKGT LG+ Y RK+ KL+ F D+DYAGD +R+STSG +
Sbjct: 1148 MSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMA 1207
Query: 1539 ENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIP-IYCDNTAA 1597
I WASKKQ +A+ST EAEYI+AA C Q +W++ LE S I CDN++
Sbjct: 1208 SGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSST 1267
Query: 1598 ICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIK 1657
I LSK+P+LH ++KHIE++ H++RD V ++ +++ TE Q ADIFTKPL +E+F+ ++
Sbjct: 1268 IQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLR 1327
Query: 1658 KNLNMHFVSD 1667
L M +S+
Sbjct: 1328 ALLGMVNMSE 1337
Score = 110 bits (274), Expect = 9e-24
Identities = 78/301 (25%), Positives = 137/301 (44%), Gaps = 43/301 (14%)
Query: 32 PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 91
P+F+G + +W M +F+ ELW ++E+G+ + + + +R A ++
Sbjct: 13 PRFDG---YYDFWSMTMENFLRS--RELWRLVEEGIPAIVVGTTPVSEAQR---SAVEEA 64
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
K K++ + +I R + DKST+KA++ S+ ++GS KVK A+ L ++EL
Sbjct: 65 KLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFEL 124
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
MK+ E I+ R T+V+ ++ + S VSKILRSL ++ V +IEE+ DL
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+TLS+++L SL VHE LN H +++ + + + ++ S
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGR-------- 236
Query: 272 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVDCPDLQ 331
RG ++ C+ C GHF +CP+ +
Sbjct: 237 ---------------------------GRGRGRSGTNRAIVECYKCHNLGHFQYECPEWE 269
Query: 332 K 332
K
Sbjct: 270 K 270
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 683 bits (1763), Expect = 0.0
Identities = 376/994 (37%), Positives = 565/994 (56%), Gaps = 36/994 (3%)
Query: 673 INNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFS 732
I NV+LV GL+ NLLS+ Q +GY V F C + + + K I + + +KI S
Sbjct: 381 IKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEI-MNIEMTDKSFKIKLS 439
Query: 733 DLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQK 792
+ ++ + + + WHKRLGH + + + ++ +LV GLP + C AC
Sbjct: 440 SVEEEAMTANVQTEE---TWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNL 495
Query: 793 GKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKS 852
GK + SF + T LE++H D+ GP+ S+ GS+Y ++ +DDY+ WV F+K
Sbjct: 496 GKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQ 555
Query: 853 KDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQ 912
K F F ++ + I +R P E+FCE GI + + P +PQQ
Sbjct: 556 KSETFATFKKFKALVEKQSNCSIKTLR----------PMEVFCEDEGINRQVTLPYSPQQ 605
Query: 913 NGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEK-TAYELFKG 971
NG ERKNR+L EMAR+M+ E +L WAEAV TS Y+QNR+ + + + T E + G
Sbjct: 606 NGAAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCG 665
Query: 972 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 1031
+PN+S+ FG CY+ +K DAKA+ GI +GYS ++K YRV+ E + VE S
Sbjct: 666 HKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSR 725
Query: 1032 HVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNS 1091
V F + + ++ D ES ++ SS + + +N
Sbjct: 726 DVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQET-------SSHDLSQIDDHANNG 778
Query: 1092 EAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSHFRQEESL 1151
E E S V ++ ++ ++ ++ PK K+KS +E++ + +PR Q
Sbjct: 779 EGETSSHVLSQVNDQEERETSES---PK-KYKSM--KEIL---EKAPRMENDEAAQGIEA 829
Query: 1152 IGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKL 1211
L++ EP+T +EA D W AM EE+ ++N W LV KP +KN+I KW+++ K
Sbjct: 830 C-LVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKT 888
Query: 1212 NEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKS 1271
+ G ++KARLVA+G+SQ+ GIDY ETFAPV+R + IR LL+YA LYQMDVKS
Sbjct: 889 DASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKS 948
Query: 1272 AFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFER 1331
AFLNG +EEEVYV QPPGF V +L K+LYGLKQAPRAWY+R+ ++ I+N F R
Sbjct: 949 AFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFAR 1008
Query: 1332 GQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLG 1391
D L+ + +D+LIV +YVDD+I N L F K M+DEFEM+ +G L +FLG
Sbjct: 1009 SMNDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLG 1068
Query: 1392 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS--KEDTGTVVDQKLYR 1449
+++NQ G+++ Q KY +L+ KF +++ K ++TP+ P + D D YR
Sbjct: 1069 MEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYR 1128
Query: 1450 GMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1509
++G LLYL ASRPD++++ +R+ S P H KR+ RY+KGT+N G+L+
Sbjct: 1129 RIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKET 1188
Query: 1510 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCT 1569
+L+G+ D+D+ G ++KST+G LG + W S KQ T+A STAEAEYI+
Sbjct: 1189 PRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATN 1248
Query: 1570 QLLWMKHQLEDYQIN-ANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGI 1628
Q +W++ ED+ + IPI CDN +AI + +NP+ H R KHIEIK+HF+R+ KG+
Sbjct: 1249 QAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGL 1308
Query: 1629 LDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
+ +++ E Q AD+ TK LSV RF+ +++ L +
Sbjct: 1309 IQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGV 1342
Score = 81.6 bits (200), Expect = 3e-15
Identities = 64/298 (21%), Positives = 136/298 (45%), Gaps = 16/298 (5%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 96
D E++ +W M + +LW ++E+GV + E R T ++ +
Sbjct: 13 DGEKYDFWSIKMATIFR--TRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTM 70
Query: 97 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 156
++ I+ ++ + +++ S++K + L ++GS +V+ K L +YE +M D
Sbjct: 71 ALQ-ILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYD 129
Query: 157 DESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSV 216
+++I+ + L L + + + KIL SLP+++ V+ +E+ +DL+ L++
Sbjct: 130 NDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTM 189
Query: 217 EDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQS 276
+L+ LK E + E S K + + SKG+ ES + + ++ +Q
Sbjct: 190 SELLGILKAQEARVTAREESTKEGAFYVRSKGR-----------ESGFKQDNTNNRVNQD 238
Query: 277 VKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVDCPDLQKEK 334
K ++ ++ + K + +K+ + K C+ C K GH+ +C KE+
Sbjct: 239 KKWCGFHKSSKH-TEEECREKPKNDDHGKNKRSNIK-CYKCGKIGHYANECRSKNKER 294
>At3g25450 hypothetical protein
Length = 1343
Score = 624 bits (1610), Expect = e-178
Identities = 349/1003 (34%), Positives = 571/1003 (56%), Gaps = 36/1003 (3%)
Query: 675 NVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVEN-VYKINFSD 733
+V+ + LK N+LS+ Q ++G D+ + TL +++ ++ K +R N +YK++ +
Sbjct: 350 DVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREG-NLLIKAQRSRNRLYKVSL-E 407
Query: 734 LADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKG 793
+ + K + L + N+ +WH RLGH ++ I + K +LV G+ + CG+C G
Sbjct: 408 VENSKCLQLTTTNEST-IWHARLGHISFETIKAMIKKELVIGISSSVPQEKETCGSCLFG 466
Query: 794 KIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSK 853
K + SF ++ LEL+H DL GP++ ++ +Y V++DD+SR+ W +K K
Sbjct: 467 KQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSILLKEK 526
Query: 854 DYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQN 913
A F F ++ E I R+D GGEF + F+ FC K GI ++P TPQQN
Sbjct: 527 SEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQN 586
Query: 914 GVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRR 973
GVVER+NRTL M R+++ N+ + W EAV S Y+ NR+ R + +T YE+FK ++
Sbjct: 587 GVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKK 646
Query: 974 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHV 1033
PN+ + FGC Y LKK D +++ ++LG SKAYR+ + + + S V
Sbjct: 647 PNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDV 706
Query: 1034 KFDDREPE--SKTSEQSESNAGT-TDSEDASESDQPSDSEKYTEVESSPEAEITPEAESN 1090
FD+ ++S +++ +GT T + ++ ++++ TE E + EAEI E E+
Sbjct: 707 VFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEPEETEEAEINGEDENI 766
Query: 1091 -SEAEPSPKVQNESASEDFQDNTQQVIQPKFKHK-----SSHHEELIIGSKDSPRRTRSH 1144
EAE Q++ + + + +QVI+P + E L++ D
Sbjct: 767 IEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIEAEHLLLAVND-------- 818
Query: 1145 FRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTK 1204
EP +EA W A +EE+ ++N W LV P IG K
Sbjct: 819 --------------EPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVK 864
Query: 1205 WVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIIL 1264
WVF+ K N G + + KARLVA+GY Q+ G+D+ E FAPVAR+E +RL+++ A ++G +
Sbjct: 865 WVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEI 924
Query: 1265 YQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFL 1324
+ +DVK+AFL+G + E+VYV QP GF + + VYKL K+LYGL+QAPRAW +L+ L
Sbjct: 925 HHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEIL 984
Query: 1325 IKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMG 1384
+ FE+ + +L+R+ ++IL+V +YVDD++ +N + F K M +FEMS +G
Sbjct: 985 KELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLG 1044
Query: 1385 ELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVD 1444
+L ++LGI++ QSK+G+ + Q +Y K++L++ + C +NTPM + LSK +D
Sbjct: 1045 KLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRID 1104
Query: 1445 QKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY 1504
+ YR IG L YL +RPD+ ++V + +R+ +PRESH A+K+I RYL+GTT+ GL +
Sbjct: 1105 ETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYF 1164
Query: 1505 RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISA 1564
+K + LIG+ D+ + D + KST G+ +L + I+W S+KQ + +S+ EAE+++A
Sbjct: 1165 KKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAA 1224
Query: 1565 ANCCTQLLWMKHQL-EDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDY 1623
Q +W++ L E + I DN +AI L+KNP+ H R+KHI ++HFIR+
Sbjct: 1225 TEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIREC 1284
Query: 1624 VQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHFVS 1666
V+ G ++++ + Q ADI TK L +F +++ + + VS
Sbjct: 1285 VENGQIEVEHVPGVRQKADILTKALGKIKFLEMRELIGVQGVS 1327
Score = 70.5 bits (171), Expect = 8e-12
Identities = 54/219 (24%), Positives = 106/219 (47%), Gaps = 19/219 (8%)
Query: 93 KKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELF 152
+K+ R ++ SIP + +++ + T+ A++ ++ + G+++VKEA+ L+ +++
Sbjct: 58 EKNDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKL 117
Query: 153 RMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDL 211
+MKD E+I++ R + + L + S V K L+SLP ++ V A+E+ DL
Sbjct: 118 KMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDL 177
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
T + ED+ +K +E + + + S + +GK +E EEE D
Sbjct: 178 KTTTFEDIAGRIKTYEDRVWDDDDSHE-------DQGKL--------MTEVEEEVVDDLE 222
Query: 272 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKED 310
+E++ V + K + R K R + K+ED
Sbjct: 223 EEEEEVINKEIKAKSHVIDRLLKLI---RLQEQKEKEED 258
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 585 bits (1507), Expect = e-167
Identities = 345/1010 (34%), Positives = 549/1010 (54%), Gaps = 40/1010 (3%)
Query: 658 KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFC-DNGYDVTFSKTNCTLVNKDDKSI 716
++ G + + N I + NV + + NL+SIS D G V F + C + +
Sbjct: 479 RISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLT 538
Query: 717 TFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGL 776
+GKR+ N+Y ++ A + + ++ D VWHKRLGH ++ S++ L V G
Sbjct: 539 LGEGKRIGNLYVLDTQSPA----ISVNAVVDVS-VWHKRLGHPSF---SRLDSLSEVLGT 590
Query: 777 PNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLV 836
A C C K K SF S + + S ELLHID++GP + ++ G KY L
Sbjct: 591 TRHKNKKSAYCHVCHLAKQKKLSFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLT 649
Query: 837 IVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCE 896
IVDD+SR TW+ +KSK VF +F ++++ + ++ VRSD+ E F F +
Sbjct: 650 IVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYK 706
Query: 897 KHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIY 956
GI+ S P TP+QN VVERK++ + +AR ++ ++N++ +W + V T+ ++ NR
Sbjct: 707 AKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTP 766
Query: 957 IRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKA 1016
+ KT +E+ G+ P+ S FGC CY + KF +++ +FLGY K
Sbjct: 767 SALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKG 826
Query: 1017 YRVYNSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVE 1076
Y++ + E+ V S +V+F + +S+QS TT S+ + D S T
Sbjct: 827 YKLLDLESNVVHISRNVEFHEELFPLASSQQS----ATTASDVFTPMDPLSSGNSITSHL 882
Query: 1077 SSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKD 1136
SP+ PS ++ ++ F + Q F +K H I S
Sbjct: 883 PSPQIS------------PSTQISKRRITK-FPAHLQDY-HCYFVNKDDSHP--ISSSLS 926
Query: 1137 SPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPF 1196
+ + SH + + I P++ EA W A+ +E+ +R D W++ P
Sbjct: 927 YSQISPSHMLY---INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPP 983
Query: 1197 QKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSY 1256
K +G KWVF K + G + R KAR+VA+GY+Q+EG+DYTETF+PVA++ ++LLL
Sbjct: 984 GKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKV 1043
Query: 1257 AINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKH----PNHVYKLKKSLYGLKQA 1312
+ + L Q+D+ +AFLNG +EE +Y+K P G+ D+K PN V +LKKS+YGLKQA
Sbjct: 1044 SASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQA 1103
Query: 1313 PRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSK 1372
R W+ + SN L+ FE+ D TLF R + + +++ +YVDDI+ ST + ++
Sbjct: 1104 SRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTE 1163
Query: 1373 LMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1432
++ F++ +G LK+FLG+++ ++ EG+ + Q KY ELL + DCK + PM P
Sbjct: 1164 ALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNI 1223
Query: 1433 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFR 1492
LSK D + D+++YR ++G L+YLT +RPDI F+V +F S PR +HL AV ++ +
Sbjct: 1224 RLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQ 1283
Query: 1493 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATI 1552
Y+KGT GL Y D L G+ DAD+ R+ST+G F+G +LISW SKKQ T+
Sbjct: 1284 YIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTV 1343
Query: 1553 AMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKH 1612
+ S+AEAEY + A ++ W+ L ++++ +Y D+TAA+ ++ NP+ H R KH
Sbjct: 1344 SRSSAEAEYRALALASCEMAWLSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKH 1403
Query: 1613 IEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
IEI H +R+ + G L + + T+ Q ADI TKPL +F + +++
Sbjct: 1404 IEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 579 bits (1492), Expect = e-165
Identities = 344/1017 (33%), Positives = 543/1017 (52%), Gaps = 50/1017 (4%)
Query: 668 NSSISINNVWLVDGLKHNLLSISQFCDN-GYDVTFSKTNCTLVNKDDKSITFKGKRVENV 726
N I +N V +V ++ +LLS+S+ CD+ V F +++ + + G R +
Sbjct: 373 NGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGL 432
Query: 727 YKINFSDLADQKVVCLLSMND---KKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHS 783
Y L +Q+ V L S + VWH RLGHAN + + LQ K + +
Sbjct: 433 YV-----LENQEFVALYSNRQCAATEEVWHHRLGHANSKALQH---LQNSKAIQINKSRT 484
Query: 784 DALCGACQKGKIVKSSFKSKDIVSTSR---PLELLHIDLFGPVNTASLYGSKYGLVIVDD 840
+C CQ GK + F ++S SR PL+ +H DL+GP S G KY + VDD
Sbjct: 485 SPVCEPCQMGKSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDD 540
Query: 841 YSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGI 900
YSR++W + +K VF SF ++++ KI +SD GGEF + + +HGI
Sbjct: 541 YSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGI 600
Query: 901 LHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPM 960
H S P TPQQNG+ ERK+R L E+ +M+ ++ + FW E+ T+ YI NR+ +
Sbjct: 601 HHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVL 660
Query: 961 LEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVY 1020
+ YE G +P+ S FG CY KFD ++ + +FLGY+ + K YR +
Sbjct: 661 KNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCF 720
Query: 1021 NSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPE 1080
T V S +V F++ E K QS +T A + ++ S+ V ++P
Sbjct: 721 YPPTGKVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISE----ISVPAAPV 776
Query: 1081 AEITPEAESNSEA---------EPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELI 1131
+ + N+ A +P P NE + E+ +++ + ++E +
Sbjct: 777 QLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEI---------AANQEQV 827
Query: 1132 IGSKDSPRRTRSHFRQEESLIGLLS----IIEPKTVEEALSDDGWILAMQEELNQFQRND 1187
I S R+++ ++ + L++ EPKT+ A+ GW A+ EE+N+
Sbjct: 828 INSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLH 887
Query: 1188 VWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARL 1247
W LVP NI+ +KWVF+ KL+ G + + KARLVA+G+ Q+EG+DY ETF+PV R
Sbjct: 888 TWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRT 947
Query: 1248 EAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLY 1307
IRL+L + + G + Q+DV +AFL+G ++E V++ QP GF D + P HV +L K++Y
Sbjct: 948 ATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIY 1007
Query: 1308 GLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLC 1367
GLKQAPRAW+D SNFL+ F + D +LF IL + +YVDDI+ ++ SL
Sbjct: 1008 GLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLL 1067
Query: 1368 KEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1427
++ + +++ F M +G ++FLGIQI G+++HQT Y ++L++ + DC M TP
Sbjct: 1068 EDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTP 1127
Query: 1428 MHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAV 1487
+ L ++ + +R + G L YLT +RPDI F+V + P S +
Sbjct: 1128 LPQ--QLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLL 1185
Query: 1488 KRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASK 1547
KRI RY+KGT +GL +++ L + D+D+AG + R+ST+G C LG NLISW++K
Sbjct: 1186 KRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAK 1245
Query: 1548 KQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIP--IYCDNTAAICLSKNPI 1605
+Q T++ S+ EAEY + ++ W+ L D I +P +YCDN +A+ LS NP
Sbjct: 1246 RQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGI-PQYLPTQVYCDNLSAVYLSANPA 1304
Query: 1606 LHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
LH+R+KH + +H+IR+ V G+++ Q I Q AD+FTK L F ++ L +
Sbjct: 1305 LHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGV 1361
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 574 bits (1479), Expect = e-163
Identities = 333/1001 (33%), Positives = 547/1001 (54%), Gaps = 65/1001 (6%)
Query: 665 TIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVE 724
T G ++ +V+ + LK N++S+ Q + G DV TL +++ + +
Sbjct: 328 TKGGIRKTLTDVYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLLLRATRSRN 387
Query: 725 NVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSD 784
+YK+ DL + V CL +L A + + +LV G+ NI +
Sbjct: 388 RLYKV---DLNVENVKCL------------QLEAAT------MVRKELVIGISNIPKEKE 426
Query: 785 ALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRW 844
CG+C GK + F S+ LEL+H DL GP+ ++ +Y LV++DD++R+
Sbjct: 427 T-CGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRY 485
Query: 845 TWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEF 904
W +K K A E F F T+++ E +KI R+D GGEF ++ F+ FC K GI
Sbjct: 486 MWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHL 545
Query: 905 SSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKT 964
++P TPQQNGVVER+NRTL M R+++ + + W EAV S YI NR+ R + +T
Sbjct: 546 TAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQT 605
Query: 965 AYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSET 1024
YE+FK R+PN+ + FGC Y +L+K D +++ ++LG SKAYR+ +
Sbjct: 606 PYEVFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTN 665
Query: 1025 QCVEESMHVKFDDREPESKTSEQSES-------NAGTTDSEDASESDQPSDSEKYTEVES 1077
+ + +K+++ + E++ + S N G +S+D +SE E E
Sbjct: 666 RKI-----IKWNNSDSETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEG 720
Query: 1078 SPE----AEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIG 1133
E +I E S A P P ++ +T+QV +P + ++ ++
Sbjct: 721 ENEHNEQEQIDAEETQPSHATPLPTLRR---------STRQVGKPNYL------DDYVL- 764
Query: 1134 SKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVP 1193
+ E+ L+ + EP +EA W A +EE+ ++N W L+
Sbjct: 765 --------MAEIEGEQVLLAIND--EPWDFKEANKLKEWRDACKEEILSIEKNKTWSLID 814
Query: 1194 KPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLL 1253
P ++ +IG KWVF+ K N G + + KARLVA+GY Q+ GIDY E FA VAR+E IR++
Sbjct: 815 LPVRRKVIGLKWVFKIKRNSDGSINKYKARLVAKGYVQRHGIDYDEVFAHVARIETIRVI 874
Query: 1254 LSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAP 1313
++ A ++G ++ +DVK+AFL+G + E+VYV QP GF + + VYKL K+LYGLKQAP
Sbjct: 875 IALAASNGWEVHHLDVKTAFLHGELREDVYVTQPEGFTNKDNEGKVYKLHKALYGLKQAP 934
Query: 1314 RAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKL 1373
RAW +L+ L + +F + + +++RR +K +LIV IYVDD++ ++ L F K
Sbjct: 935 RAWNTKLNKILQELNFVKCSKEPSVYRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKD 994
Query: 1374 MQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT 1433
M +FEMS +G+L ++LGI++ K G+ + Q +Y +++++ + +C + PM
Sbjct: 995 MAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLE 1054
Query: 1434 LSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRY 1493
L K + ++ YR MIG L Y+ +RPD+ + V + +R+ PRESH A+K++ RY
Sbjct: 1055 LCKAQEEKCITERDYRRMIGCLRYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRY 1114
Query: 1494 LKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIA 1553
LKGT + GL ++ L+G+ D+ ++ D + KST+G+ +L + I+W S+KQ +A
Sbjct: 1115 LKGTMSHGLYLKRGFKSGLVGYSDSSHSADLDDGKSTAGHIFYLHQCPITWCSQKQQVVA 1174
Query: 1554 MSTAEAEYISAANCCTQLLWMKHQL-EDYQINANSIPIYCDNTAAICLSKNPILHSRAKH 1612
+S+ EAE+++A Q +W++ E + + I DN +AI L+KN + H R+KH
Sbjct: 1175 LSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKVMIRVDNKSAIALTKNLVFHGRSKH 1234
Query: 1613 IEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
I ++HFIR+ V+ ++++ + Q ADI TKPL +F
Sbjct: 1235 IHRRYHFIRECVENNLVEVDHVPGVEQRADILTKPLGRIKF 1275
Score = 86.7 bits (213), Expect = 1e-16
Identities = 61/288 (21%), Positives = 125/288 (43%), Gaps = 54/288 (18%)
Query: 58 ELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDK 117
++W+ ++ G DD++ K+ R ++ S+P + +++
Sbjct: 9 KVWETIDPGSDDME----------------------KNDMARALLFQSVPESTILQVGKH 46
Query: 118 STAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL 177
T+KAM+ ++ G+++VKEAK L+ +++ MKD+E+I+E R + + + L
Sbjct: 47 KTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLNMKDNETIDEFVGRISEISTKSESL 106
Query: 178 KKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETS 236
+ S V K L+SLP ++ + A+E+ DLNT ED+V +K +E + + + S
Sbjct: 107 GEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNTTGFEDIVGRMKTYEDRVCDEDDS 166
Query: 237 KKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKF 296
+ + + + ++S ++ + S G
Sbjct: 167 PEEQGKLMYANSESSYDTRGGRGRGRGRSSGRG--------------------------- 199
Query: 297 LSKRGSYKNSKKEDQKG-CFNCKKPGHFIVDCPDLQKEKFKGKSMKSS 343
RG Y +++ K C+ C K GH+ +C D + K + + +
Sbjct: 200 ---RGGYGYQQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQN 244
>At1g70010 hypothetical protein
Length = 1315
Score = 570 bits (1469), Expect = e-162
Identities = 345/998 (34%), Positives = 535/998 (53%), Gaps = 40/998 (4%)
Query: 673 INNVWLVDGLKHNLLSISQFCDN-GYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF 731
+N+V + K NLLS+S + G + F +T+C L + + + GK+V N+Y ++
Sbjct: 325 LNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDL 384
Query: 732 SDLA----DQKV-VCLLSMNDKKWVWHKRLGHANWRLISKISKL-QLVKGLPNIDYHSDA 785
L+ D + V ++ +D +WHKRLGH + + + +S L K N D+H
Sbjct: 385 DSLSHPGTDSSITVASVTSHD---LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFH--- 438
Query: 786 LCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWT 845
C C K F S + S SRP +L+HID +GP + + G +Y L IVDDYSR T
Sbjct: 439 -CRVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRAT 496
Query: 846 WVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFS 905
WV +++K V +F T ++++ E I VRSD+ E F F GI+ S
Sbjct: 497 WVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSKGIVPYHS 553
Query: 906 SPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTA 965
P TPQQN VVERK++ + +AR++ ++++ +W + + T+ Y+ NR+ + +K
Sbjct: 554 CPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCP 613
Query: 966 YELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQ 1025
+E+ P + FGC CY + KF +A+ F+GY K Y++ + ET
Sbjct: 614 FEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETH 673
Query: 1026 CVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITP 1085
+ S HV F + S+ S+ + + Q S+ +SS EI P
Sbjct: 674 SIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILP 733
Query: 1086 EAE-SNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSH 1144
A +N+ EPS + + A + +Q + H ++ + R+ S+
Sbjct: 734 SANPTNNVPEPSVQTSHRKAKKP------AYLQDYYCHS------VVSSTPHEIRKFLSY 781
Query: 1145 FRQEESLIGLLSII----EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNI 1200
R + + L+ + EP EA W AM E + + W++ P K
Sbjct: 782 DRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRC 841
Query: 1201 IGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINH 1260
IG +W+F+ K N G V R KARLVAQGY+Q+EGIDY ETF+PVA+L +++LLL A
Sbjct: 842 IGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARF 901
Query: 1261 GIILYQMDVKSAFLNGVIEEEVYVKQPPGFE----DLKHPNHVYKLKKSLYGLKQAPRAW 1316
+ L Q+D+ +AFLNG ++EE+Y++ P G+ D PN V +LKKSLYGLKQA R W
Sbjct: 902 KLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQW 961
Query: 1317 YDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQD 1376
Y + S+ L+ F + D T F + L V +Y+DDII S N + M+
Sbjct: 962 YLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKS 1021
Query: 1377 EFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSK 1436
F++ +GELK+FLG++I +S +G+++ Q KY +LL + CK + PM P+ +
Sbjct: 1022 FFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAH 1081
Query: 1437 EDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKG 1496
+ G V+ YR +IG L+YL +RPDI F+V A+F PR++HL AV +I +Y+KG
Sbjct: 1082 DSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKG 1141
Query: 1497 TTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMST 1556
T GL Y + + +L + +ADY R R+STSG C FLG++LI W S+KQ ++ S+
Sbjct: 1142 TIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSS 1201
Query: 1557 AEAEYISAANCCTQLLWMKHQLEDYQIN-ANSIPIYCDNTAAICLSKNPILHSRAKHIEI 1615
AEAEY S + +L+W+ + L++ Q+ + ++CDN AAI ++ N + H R KHIE
Sbjct: 1202 AEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIES 1261
Query: 1616 KHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
H +R+ + KG+ ++ I+TE Q AD FTKPL F
Sbjct: 1262 DCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHF 1299
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 569 bits (1467), Expect = e-162
Identities = 336/1010 (33%), Positives = 543/1010 (53%), Gaps = 36/1010 (3%)
Query: 658 KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDN-GYDVTFSKTNCTLVNKDDKSI 716
K+ G + N I + NV + + NL+SIS D+ G V F K +C + + +
Sbjct: 468 KISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRM 527
Query: 717 TFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGL 776
+G+RV N+Y + D+ DQ + ++ +WH+RLGHA+ + + IS G
Sbjct: 528 LGQGRRVANLYLL---DVGDQSISVNAVVDIS--MWHRRLGHASLQRLDAISDSL---GT 579
Query: 777 PNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLV 836
C C K K SF + + V +LLHID++GP + ++ G KY L
Sbjct: 580 TRHKNKGSDFCHVCHLAKQRKLSFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLT 638
Query: 837 IVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCE 896
IVDD+SR TW+ +K+K VF +F Q++++ ++K+ VRSD+ E + F F
Sbjct: 639 IVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELK---FTSFYA 695
Query: 897 KHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIY 956
+ GI+ S P TP+QN VVERK++ + +AR ++ ++ + W + V T+ ++ NR
Sbjct: 696 EKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTP 755
Query: 957 IRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKA 1016
+ ++ KT YE+ G P FGC CY + KF +++ +FLGY K
Sbjct: 756 SQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKG 815
Query: 1017 YRVYNSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVE 1076
Y++ + E+ V S +V+F + + SES+ S SD+
Sbjct: 816 YKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSL 875
Query: 1077 SSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKD 1136
S +++ P+ S +P + D+ NT Q S H+ I +
Sbjct: 876 PSQISDLPPQISSQRVRKPPAHLN------DYHCNTMQ----------SDHKYPISSTIS 919
Query: 1137 SPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPF 1196
+ + SH + + I P EA W A+ E+ ++ + W++ P
Sbjct: 920 YSKISPSHMCY---INNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPK 976
Query: 1197 QKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSY 1256
K +G KWVF K G + R KARLVA+GY+Q+EG+DYT+TF+PVA++ I+LLL
Sbjct: 977 GKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKV 1036
Query: 1257 AINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKH----PNHVYKLKKSLYGLKQA 1312
+ + L Q+DV +AFLNG +EEE+++K P G+ + K N V +LK+S+YGLKQA
Sbjct: 1037 SASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQA 1096
Query: 1313 PRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSK 1372
R W+ + S+ L+ F++ D TLF + + +IV +YVDDI+ ST+ + + ++
Sbjct: 1097 SRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTE 1156
Query: 1373 LMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1432
+ F++ +G+LK+FLG+++ ++ G+ + Q KY ELL+ + CK ++ PM P
Sbjct: 1157 ELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNL 1216
Query: 1433 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFR 1492
+ K+D + D + YR ++G L+YLT +RPDI F+V +F S PR +HLTA R+ +
Sbjct: 1217 KMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQ 1276
Query: 1493 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATI 1552
Y+KGT GL Y S D L GF D+D+A + R+ST+ F+G++LISW SKKQ T+
Sbjct: 1277 YIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTV 1336
Query: 1553 AMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKH 1612
+ S+AEAEY + A +++W+ L Q + +Y D+TAAI ++ NP+ H R KH
Sbjct: 1337 SRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKH 1396
Query: 1613 IEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
I++ H +R+ + G L + + TE Q ADI TKPL +F+ +K +++
Sbjct: 1397 IKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 564 bits (1454), Expect = e-160
Identities = 310/842 (36%), Positives = 461/842 (53%), Gaps = 68/842 (8%)
Query: 673 INNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF- 731
I+NV+ + +K N+LS+ Q + GYD+ N ++ +K+ IT ++ +N
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIR 450
Query: 732 SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQ 791
+D+A +C ++ W+WH R GH N+ + +S+ ++V+GLP I+ H + +C C
Sbjct: 451 NDIAQCLKMCY---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCL 506
Query: 792 KGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIK 851
G K SF + +PLEL+H D+ GP+ SL S Y L+ +DD+SR TWV F+K
Sbjct: 507 LGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566
Query: 852 SKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQ 911
K E+F F ++ E L I +RSD GGEF ++ F +CE +GI + + PR+PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 912 QNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKG 971
QNGV ERKNRT+ EMAR+M+ L K WAEAV + Y+ NR + + KT E + G
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSG 686
Query: 972 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 1031
R+P +S+ FG + + K D K+++ IF+GY SK Y++YN +T+ S
Sbjct: 687 RKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISR 746
Query: 1032 HVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNS 1091
++ FD+ S + + N ED E P+ E +E ++P T S
Sbjct: 747 NIVFDEEGEWDWNSNEEDYNFFPHFEEDKPE---PTREEPPSEEPTTPPTSPTSSQIEES 803
Query: 1092 EAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSHFRQEESL 1151
+E +P+ ++ + +N + + +L
Sbjct: 804 SSERTPRFRSIQELYEVTENQENL----------------------------------TL 829
Query: 1152 IGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKL 1211
L + EP +EA+ W AM EE+ Q+ND W+L P IG KWV++ K
Sbjct: 830 FCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKK 889
Query: 1212 NEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKS 1271
N +GEV R KARLVA+GYSQ+ GIDY E FAPVARLE +RL++S A + ++QMDVKS
Sbjct: 890 NSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKS 949
Query: 1272 AFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFER 1331
AFLNG +EEEVY++QP G+ + V +LKK LYGLKQAPRAW R+ + + DF +
Sbjct: 950 AFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIK 1009
Query: 1332 GQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLG 1391
+ L+ + K+DILI +YVDD+IF N S+ +EF K M EFEM+ +G + ++LG
Sbjct: 1010 CPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLG 1069
Query: 1392 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1451
I++ Q G+++ Q Y KE+LKKFK++D +
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKMDDSN--------------------------PSL 1103
Query: 1452 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1511
+GSL YLT +RPDIL++V + +R+ P +H A KRI RY+KGT N GL Y + DYK
Sbjct: 1104 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYK 1163
Query: 1512 LI 1513
L+
Sbjct: 1164 LV 1165
Score = 81.6 bits (200), Expect = 3e-15
Identities = 67/299 (22%), Positives = 132/299 (43%), Gaps = 16/299 (5%)
Query: 44 WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
W M + + D +W+I+E G ++ + EG+ + + K+ K +I
Sbjct: 21 WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74
Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESIEEM 163
+ + K+ + ++AK + L +++G+ +VK+ + L ++E +MK+ E + +
Sbjct: 75 QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134
Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
+SR T+ + L+ + + K+LRSL ++ VT IEE KDL +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194
Query: 224 KVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
+ +E E KK + I L + ++ ++Y+ + G
Sbjct: 195 QAYE------EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248
Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVDCPDLQKEKFKGKS 339
+ + K G K+ + C+NC K GH+ +C +KFK K+
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFKEKA 306
>At1g37110
Length = 1356
Score = 536 bits (1382), Expect = e-152
Identities = 343/1054 (32%), Positives = 550/1054 (51%), Gaps = 81/1054 (7%)
Query: 640 KGVKPKVLNDQKTLSIHPKVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGY-- 697
KG +L D ++ + R T G + + NV V L+ NL+S GY
Sbjct: 331 KGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRH 390
Query: 698 -----DVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKW-V 751
V + K N T + +G +Y ++ S + + +C + K +
Sbjct: 391 EGGEGKVRYFKNNKTAL---------RGSLSNGLYVLDGSTVMSE--LCNAETDKVKTAL 439
Query: 752 WHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTS 809
WH RLGH + + ++ L+ K + +++ C C GK K SF S
Sbjct: 440 WHSRLGHMSMNNLKVLAGKGLIDRKEINELEF-----CEHCVMGKSKKVSFNVGKHTSED 494
Query: 810 RPLELLHIDLFGPVN-TASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQ 868
L +H DL+G N T S+ G +Y L I+DD +R W+ F+KSKD + F + + ++
Sbjct: 495 A-LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVE 553
Query: 869 SEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMAR 928
++ K+ +R+D+G EF N F+ +C++HGI + TPQQNGV ER NRT+ E R
Sbjct: 554 NQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVR 613
Query: 929 TMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYI 988
+++++ + + FWAEA T+ Y+ NR + E++ R+P + +FG Y+
Sbjct: 614 CLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYV 673
Query: 989 LNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYN-SETQCV-------EES-----MHVKF 1035
+ LK +A +G FLGY +K Y+V+ E +CV +ES + VK
Sbjct: 674 HQDQGKLKP---RALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQESVVYRDLKVKE 730
Query: 1036 DDRE---PESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNSE 1092
DD + + TS + E N S SDSE TE E S ++E E E + +
Sbjct: 731 DDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSE--EEVEYSEK 788
Query: 1093 AEPSPKVQNESASEDFQDNTQQVIQP--KFKHKSSHHEELIIGSKDSPRRTRSHFRQEES 1150
+ +PK + + +D ++ I P +F +SS L++ E+
Sbjct: 789 TQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVV---------------VEN 833
Query: 1151 LIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVF 1207
I + EP++ +EA+ + W +A +E++ +N WDLV KP + IIG +W+F
Sbjct: 834 CI----VQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLF 889
Query: 1208 RNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQ 1266
+ K G E TR KARLVA+GY+Q+EG+DY E FAPV + +IR+L+S ++ + L Q
Sbjct: 890 KLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQ 949
Query: 1267 MDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1326
MDVK+ FL+G +EEE+Y++QP GF N V +LKKSLYGLKQ+PR W R F+
Sbjct: 950 MDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSS 1009
Query: 1327 NDFERGQVDTTLF-RRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGE 1385
F R + D ++ + + D + + +YVDD++ + + + + EFEM MG
Sbjct: 1010 QQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGG 1069
Query: 1386 LKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS---KEDTG 1440
LGI I + ++G + + Q Y +++L +F + K+ N P+ L+ +ED
Sbjct: 1070 ASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAVREEDEC 1129
Query: 1441 TVVDQKLYRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTN 1499
D Y +GS++Y + +RPD+ +++CL +R+ S P H AVK + RYLKG +
Sbjct: 1130 VDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQD 1189
Query: 1500 LGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEA 1559
L L++ K D+ + G+CD++YA D R+S SG +G N +SW + Q +AMST EA
Sbjct: 1190 LNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEA 1249
Query: 1560 EYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHF 1619
EYI+ A + +W+K L+D + + + I+CD+ +AICLSKN + H R KHI+++ ++
Sbjct: 1250 EYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNY 1309
Query: 1620 IRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
IRD V+ G +D+ I T D TK + V +F
Sbjct: 1310 IRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKF 1343
Score = 37.0 bits (84), Expect = 0.096
Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 59/311 (18%)
Query: 34 FNGDPEEFSWWKTNMYSF--IMGLDEELWDILEDGVDDLDLDE------EGAAIDRRIHT 85
FNGD +FS WK + + ++GL + L D L E +G + +
Sbjct: 13 FNGD-RDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTK-EV 70
Query: 86 PAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALML 145
P K+ ++ + + II+ I +K++ +T ++A+L +KK E
Sbjct: 71 PDPVKI-EQSEQAKNIIINHISDVVLLKVNHYATTADLWATL------NKKYMETSLPNR 123
Query: 146 VH-QYEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKV 202
++ Q +L F+M +I++ F +V+ L L+ IL SLP+
Sbjct: 124 IYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLK 183
Query: 203 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASES 262
++ TL+V+D+ SS K E L E
Sbjct: 184 HTLKYGN--KTLTVQDVTSSAKSLERELAEAV---------------------------- 213
Query: 263 EEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGH 322
D D+ Q+ + + QK K S NSK + C+ CKK GH
Sbjct: 214 -------DLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVP--CWYCKKEGH 264
Query: 323 FIVDCPDLQKE 333
DC +K+
Sbjct: 265 VKKDCYSRKKK 275
>At3g45520 copia-like polyprotein
Length = 1363
Score = 528 bits (1361), Expect = e-150
Identities = 328/1013 (32%), Positives = 537/1013 (52%), Gaps = 47/1013 (4%)
Query: 670 SISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKI 729
++++ NV + + NLLS+ F G+ F N L K + +G+R + +Y +
Sbjct: 369 TVTLQNVRYIPDMDRNLLSLGTFEKAGHK--FESENGMLRIKSGNQVLLEGRRYDTLYIL 426
Query: 730 NFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALC 787
+ D+ + + ND +WH+RL H + + +S + K + K + +D D +
Sbjct: 427 HGKPATDESLA-VARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIY 485
Query: 788 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTW 846
G +K + + D T + LE +H DL+G P SL +Y + +DDY+R W
Sbjct: 486 GRAKK---IGFNLAQHD---TKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVW 539
Query: 847 VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 906
V F+K+KD A E F S+ + ++++ ++ +R+D+G EF N F+ FCE+ G +
Sbjct: 540 VYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTC 599
Query: 907 PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAY 966
TPQQNGVVER NRT+ E R+M+ ++ L K FWAEA +T+ + N+ + +
Sbjct: 600 AYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPD 659
Query: 967 ELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQC 1026
+ + G+ P SY ++GC ++ K + +A++G+ +GY K Y+V+ E +
Sbjct: 660 KRWSGKAPIYSYLRRYGCVTFVHTDGG---KLNLRAKKGVLIGYPSGVKGYKVWLIEEKK 716
Query: 1027 VEESMHVKFDDREPESKTSEQSESNAGTTDSEDAS--ESDQPSDSEKYTEVESSPEAEIT 1084
S +V F + ++ E + D S + D +D + + E S +A++T
Sbjct: 717 CVVSRNVSFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQS-QAQVT 775
Query: 1085 PEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRSH 1144
P + P P+ + + E T P H E I + PRR
Sbjct: 776 PATRGAVTSTP-PRYETDDIEE-----TDVHQSPLSYHLVRDRERREIRA---PRRFDDE 826
Query: 1145 FRQEESLIGLLS--IIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQKN 1199
E+L +EP +EA+ D D W LAM EE+ +ND W V +P ++
Sbjct: 827 DYYAEALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQR 886
Query: 1200 IIGTKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI 1258
IIG++W+++ K G E R KARLVA+GY+Q+EG+DY E FAPV + +IR+LLS
Sbjct: 887 IIGSRWIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVA 946
Query: 1259 NHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYD 1318
+ L Q+DVK+AFL+G ++E++Y+ P G E L N V L KSLYGLKQAPR W +
Sbjct: 947 QENLELEQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNE 1006
Query: 1319 RLSNFLIKNDFERGQVDTTLFRRTLKKD-ILIVQIYVDDIIFGSTNASLCKEFSKLMQDE 1377
+ ++++ + F+R D+ + + L D + + YVDD++ + N K + +
Sbjct: 1007 KFNHYMTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIK 1066
Query: 1378 FEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPM--HPTCT 1433
FEM +G K LGI+I +E +++ Q Y ++LK F + + K TP+ H
Sbjct: 1067 FEMKDLGAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMK 1126
Query: 1434 LSKEDTGTVVDQKL----YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVK 1488
+ E+ + ++ + Y +GS++Y + +RPD+ + V + +RF S P + H VK
Sbjct: 1127 SATEEKLSTEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVK 1186
Query: 1489 RIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKK 1548
+ RY+KGT + L Y+++ D+ + G+CDADYA D +R+S +G LG N ISW S
Sbjct: 1187 WVLRYIKGTVDTRLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGL 1246
Query: 1549 QATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHS 1608
Q +A S+ E EY+S + +W+K L+D+ ++ I+CD+ +AI LSKN + H
Sbjct: 1247 QRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHE 1306
Query: 1609 RAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF----DFIK 1657
R KHI++K HFIR+ + G +++ I TE ADIFTK L V +F DF++
Sbjct: 1307 RTKHIDVKFHFIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLR 1359
Score = 57.0 bits (136), Expect = 9e-08
Identities = 66/320 (20%), Positives = 126/320 (38%), Gaps = 55/320 (17%)
Query: 33 KFNGDPEEFSWWKTNMYSFI--MGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 90
KF+G + ++ WK + + I +GL L + + + D E + D + +
Sbjct: 10 KFDGRGD-YTMWKEKLLAHIDMLGLSAVLRE--SETPMGKERDSEKSDEDEKEEREKMEA 66
Query: 91 LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL----MLV 146
+K K R IV S+ K+ +++A AM +L ++ +KAL L
Sbjct: 67 FEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEAL-------DRLYMSKALPNRIYLK 119
Query: 147 HQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIE 206
+ F+M ++ SIE F +V+ L+ L D +L SLP + ++
Sbjct: 120 QKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLK 179
Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 266
+ LS++++ +++ E+ + S K ++ L
Sbjct: 180 YSSGKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGL---------------------- 217
Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVD 326
+ +K E R ++K +G K SK + ++GC+ C + GH
Sbjct: 218 --------------YVKDKAENRGRSEQK---DKGKGKRSKSKSKRGCWICGEDGHLKST 260
Query: 327 CPDLQKEKFKGKSMKSSFNS 346
CP+ K +FK + +S
Sbjct: 261 CPNKNKPQFKNQGSNKGESS 280
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 527 bits (1358), Expect = e-149
Identities = 336/1039 (32%), Positives = 529/1039 (50%), Gaps = 68/1039 (6%)
Query: 669 SSISINNVWLVDGLKHNLLSISQFCD-NGYDVTFSKTNCTLVNKDDKSITFKGKRVENVY 727
S++ + +V+ V+ + +L+SI Q D N + S + ++ + + G+RV +
Sbjct: 311 SNLVMISVFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTF 370
Query: 728 KINFSDLADQKVVCLLSMNDKKW-VWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDAL 786
+++A V +K + +WH R+GH R++S I + + H +
Sbjct: 371 HFRSTEIAASVTV----KEEKNYELWHSRMGHPAARVVSLIPESSVSVS----STHLNKA 422
Query: 787 CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTW 846
C C + K ++SF I T R EL++ DL+GP T S G++Y L I+DDYSR W
Sbjct: 423 CDVCHRAKQTRNSFPLS-INKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVW 481
Query: 847 VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 906
+ + K A +F + +KI VRSD+G EF F ++ G++HE S
Sbjct: 482 LYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLC--LTKFFQEQGVIHERSC 539
Query: 907 PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAY 966
TP++N VERK+R L +AR + + NL FW E V T+ Y+ NR + + T Y
Sbjct: 540 VATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPY 599
Query: 967 ELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQC 1026
E ++P + FG CY N KF +++R +F+GY K +R+++ E
Sbjct: 600 ERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNE 659
Query: 1027 VEESMHVKFDDRE------PESKTSEQSES-------------------NAGTTDSEDAS 1061
S V F + E E E+ E NAG T S
Sbjct: 660 FFVSRDVVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVS 719
Query: 1062 ESDQPSDSEKYTEVESSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFK 1121
PS +S +E + + ++E P+P SAS Q + P +
Sbjct: 720 SPISPS--------ATSSRSEHSTSSPLDTEVVPTPATSTTSASSPSSPTNLQFL-PLSR 770
Query: 1122 HKSSHHEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTV-EEALSDDGWILAMQEEL 1180
K + + + + PRR + R + + L + TV +E+ S IL ++
Sbjct: 771 AKPTTAQAVAPPAVPPPRRQST--RNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKR 828
Query: 1181 NQFQR----------------NDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARL 1224
+ +R N W + P K IG++WV++ K N G V R KARL
Sbjct: 829 DDTRRFSASHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARL 888
Query: 1225 VAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYV 1284
VA G Q+EG DY ETFAPVA++ +RL L A+ ++QMDV +AFL+G + EEVY+
Sbjct: 889 VALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYM 948
Query: 1285 KQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLK 1344
K PPGFE HPN V +L+K+LYGLKQAPR W+++L+ L + F++ D +LF
Sbjct: 949 KLPPGFE-ASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKG 1007
Query: 1345 KDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVH 1404
+ + IYVDD+I + ++F + + F M +G LK+FLGI++ +S G+Y+
Sbjct: 1008 SVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYIC 1067
Query: 1405 QTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPD 1464
Q KY +++ + L K N P+ L + + D + YR ++G L+YL +R D
Sbjct: 1068 QRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLD 1127
Query: 1465 ILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDR 1524
+ FSV + ARF +PRE H A R+ RYLK G+ R+S D+++ G+CD+D+AGD
Sbjct: 1128 LAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDP 1187
Query: 1525 IERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQI- 1583
+ R+S +G G++ ISW +KKQ T++ S+AEAEY + + ++LLW+K L +
Sbjct: 1188 MSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVS 1247
Query: 1584 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADI 1643
+ + + CD+ +AI ++ NP+ H R KHIEI +HF+RD KG++ + + T Q ADI
Sbjct: 1248 HVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADI 1307
Query: 1644 FTKPLSVERFDFIKKNLNM 1662
FTKPL + F + L +
Sbjct: 1308 FTKPLGRDCFSAFRIKLGI 1326
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 523 bits (1347), Expect = e-148
Identities = 333/1012 (32%), Positives = 535/1012 (51%), Gaps = 57/1012 (5%)
Query: 670 SISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKI 729
+I + NV + + NLLS+ F GY F + L K + G+R + +Y +
Sbjct: 362 TIVLTNVRYIPDMDRNLLSLGTFEKAGYK--FESEDGILRIKAGNQVLLTGRRYDTLYLL 419
Query: 730 NFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKG-LPNIDYHSDALCG 788
N+ +A + + + +D +WH+RL H + K ++ + KG L S +C
Sbjct: 420 NWKPVASESLAVVKRADDTV-LWHQRLCHMS----QKNMEILVRKGFLDKKKVSSLDVCE 474
Query: 789 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWV 847
C GK + SF S T LE +H DL+G P SL +Y + I+DD++R WV
Sbjct: 475 DCIYGKAKRKSF-SLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWV 533
Query: 848 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSP 907
F+K+KD A E F + ++++ + ++ +R+D+G EF N+ F+ FCE GI +
Sbjct: 534 YFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCA 593
Query: 908 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYE 967
TPQQNGV ER NRT+ E R+M+ ++ L K FWAEA +T+ + N+ + + +
Sbjct: 594 YTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDK 653
Query: 968 LFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCV 1027
+ G P SY ++GC ++ +T D K + +A++G+ +GY K Y+V+ + +
Sbjct: 654 KWSGNPPVYSYLRRYGCVAFV-HTDD--GKLEPRAKKGVLIGYPVGVKGYKVWILDERKC 710
Query: 1028 EESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEA 1087
S ++ F + ++ E+ + T+ +D + S D E +V S + E+
Sbjct: 711 VVSRNIIFQENAVYKDLMQRQENVS--TEEDDQTGSYLEFDLEAERDVISGGDQEMV--- 765
Query: 1088 ESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKD-----SPRRTR 1142
+ A SP V + + D V Q S+H ++ +D +PRR
Sbjct: 766 -NTIPAPESPVVSTPTTQDTNDDEDSDVNQSPL----SYH---LVRDRDKREIRAPRRFD 817
Query: 1143 SHFRQEESLIGLLS--IIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQ 1197
E+L +EP+ +A D D W LAM EE++ ++N+ W +V +P
Sbjct: 818 DEDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPEN 877
Query: 1198 KNIIGTKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSY 1256
+ IIG +W+F+ KL G E R KARLVA+GY+Q+EGIDY E FAPV + +IR+LLS
Sbjct: 878 QRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSI 937
Query: 1257 AINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAW 1316
+ L Q+DVK+AFL+G ++E++Y+ P G+E + N V L K+LYGLKQAP+ W
Sbjct: 938 VAQEDLELEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQW 997
Query: 1317 YDRLSNFLIKNDFERGQVDTTLFRRTLKK-DILIVQIYVDDIIFGSTNASLCKEFSKLMQ 1375
++ NF+ + F + D+ + + L ++ + IYVDDI+ S N +
Sbjct: 998 NEKFDNFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLG 1057
Query: 1376 DEFEMSMMGELKFFLGIQINQSKE-GV-YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT 1433
FEM +G K LG++I + + GV ++ Q Y ++L+ + + + K TP+
Sbjct: 1058 MRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFK 1117
Query: 1434 LSKEDTGTVVDQKL-----------YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRE 1481
+QKL Y +GS++Y + +RPD+ + V + +RF S P +
Sbjct: 1118 FQ-----AATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIK 1172
Query: 1482 SHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENL 1541
H VK + RY+KGT L Y+KS + ++G+CDADYA D +R+S +G LG N
Sbjct: 1173 EHWLGVKWVLRYIKGTLKTRLCYKKSSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNT 1232
Query: 1542 ISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLS 1601
ISW S Q +A ST E+EY+S + +W+K L+D+ S+ I+CD+ +AI LS
Sbjct: 1233 ISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALS 1292
Query: 1602 KNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
KN + H R KHI++K+HFIR+ + G +++ I TE ADIFTK L+V +F
Sbjct: 1293 KNNVHHERTKHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSKF 1344
Score = 59.7 bits (143), Expect = 1e-08
Identities = 65/310 (20%), Positives = 124/310 (39%), Gaps = 55/310 (17%)
Query: 33 KFNGDPEEFSWWKTNMYSF--IMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 90
KF+G + ++ WK + + I+GL+ L + G LDE + ++ +
Sbjct: 10 KFDGRGD-YTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK--FEA 66
Query: 91 LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL--MLVHQ 148
L +K K R IV S+ K+ +STA AM +L K+ +KAL + +
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLAL-------DKLYMSKALPNRIYPK 119
Query: 149 YEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIE 206
+L F+M ++ S+E F +++ L+ + D +L +LP + ++
Sbjct: 120 QKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLK 179
Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 266
+ + L+++++ +++ E+ L + S K ++ L K K K +
Sbjct: 180 YSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKG------ 233
Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIVD 326
+G K K + + GC+ C + GHF
Sbjct: 234 ---------------------------------KGKGKKGKSKKKPGCWTCGEEGHFRSS 260
Query: 327 CPDLQKEKFK 336
CP+ K +FK
Sbjct: 261 CPNQNKPQFK 270
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 517 bits (1332), Expect = e-146
Identities = 331/1017 (32%), Positives = 536/1017 (52%), Gaps = 60/1017 (5%)
Query: 669 SSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYK 728
S + + +V + + NL+S+ D G F + L S KG++ + +Y
Sbjct: 337 SQVILTDVRYMPNMTRNLISLGTLEDRG--CWFKSQDGILKIVKGCSTILKGQKRDTLYI 394
Query: 729 INFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDA-LC 787
++ + + + D+ +WH RLGH + K ++ + KG + + C
Sbjct: 395 LD-GVTEEGESHSSAEVKDETALWHSRLGHMS----QKGMEILVKKGCLRREVIKELEFC 449
Query: 788 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTW 846
C GK + SF V T L +H DL+G P N ASL S+Y + VDDYSR W
Sbjct: 450 EDCVYGKQHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVW 508
Query: 847 VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 906
+ F++ KD A E F + ++++ + K+ K+R+D+G E+ N FE FC++ GI+ +
Sbjct: 509 IYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTC 568
Query: 907 PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAY 966
TPQQNG+ ER NRT+ + R+M+ + + K FWAEA +T+ Y+ NR +
Sbjct: 569 AYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPE 628
Query: 967 ELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQC 1026
E + G P++S +FGC YI + K + ++++GIF Y E K Y+V+ E +
Sbjct: 629 EKWTGALPDLSSLRKFGCLAYIHADQG---KLNPRSKKGIFTSYPEGVKGYKVWVLEDKK 685
Query: 1027 VEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSE-----KYTEVESSPEA 1081
S +V F ++ S++ +D ED + +D E T+ S+P
Sbjct: 686 CVISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSE 745
Query: 1082 EITPE----------AESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELI 1131
T + SE E S V++ S + +D ++ I+ K+ S+
Sbjct: 746 ATTSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFA 805
Query: 1132 IGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQRNDV 1188
S+D + EPK+ +EAL D + W AM+EE+ +N
Sbjct: 806 YYSEDDGKP------------------EPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHT 847
Query: 1189 WDLVPKPFQKNIIGTKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARL 1247
WDLV KP + +IG +WVF K G E R ARLVA+G++Q+EG+DY E F+PV +
Sbjct: 848 WDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKH 907
Query: 1248 EAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLY 1307
+IR LLS +++ + L QMDVK+AFL+G +EEE+Y+ QP GFE + N V LK+SLY
Sbjct: 908 VSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLY 967
Query: 1308 GLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILI-VQIYVDDIIFGSTNASL 1366
GLKQ+PR W R F+ + R D+ ++ + D I + +YVDD++ S N S
Sbjct: 968 GLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSE 1027
Query: 1367 CKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVM 1424
E +L+ EFEM +G+ K LG++I++ ++ + + Q Y K++L+ F++++ K +
Sbjct: 1028 VNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPV 1087
Query: 1425 NTPMHPTCTLS----KEDTGTVVDQKL--YRGMIGSLLY-LTASRPDILFSVCLCARFQS 1477
+TP+ L KE K+ Y IGS++Y + +RPD+ +S+ + +RF S
Sbjct: 1088 STPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMS 1147
Query: 1478 DPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFL 1537
P + H AVK + RY++GT L +RK D+ L G+CD+DY + R+S +G +
Sbjct: 1148 KPLKDHWQAVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRRSITGYVFTV 1207
Query: 1538 GENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAA 1597
G N ISW SK Q +A+S+ EAEY++ + LW+K + + + + ++ D+ +A
Sbjct: 1208 GGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSA 1267
Query: 1598 ICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFD 1654
I L+KN + H R KHI+I+ HFIRD + G++ + I TE A+IFTK + + +F+
Sbjct: 1268 ITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAKFE 1324
Score = 32.7 bits (73), Expect = 1.8
Identities = 27/120 (22%), Positives = 54/120 (44%), Gaps = 4/120 (3%)
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
F+M++++ I+E F +V+ L L+ +L SLP+R+ V ++ +
Sbjct: 100 FKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSR 159
Query: 212 NTLSVEDLVSSL--KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDG 269
L ++D++ + K E+S N + + P ++ +K S S +S DG
Sbjct: 160 EKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRS--KSADG 217
>At4g27210 putative protein
Length = 1318
Score = 509 bits (1311), Expect = e-144
Identities = 318/1040 (30%), Positives = 513/1040 (48%), Gaps = 95/1040 (9%)
Query: 668 NSSISINNVWLVDGLKHNLLSISQFC-DNGYDVTFSKTNCTLVNKDDKSITFKGKRVENV 726
+ ++ + +V + + +LLS+S+ D V F + +K K + G + +
Sbjct: 228 SGTVPLTDVLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGSNRDGL 287
Query: 727 YKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDAL 786
Y + D Q + VWH+RLGH + +++
Sbjct: 288 YCLK-DDKQFQAFFSTRQRSASDEVWHRRLGHPHPQIL---------------------- 324
Query: 787 CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTW 846
+PLE +H DL+GP S+ G +Y V +D YSR++W
Sbjct: 325 -----------------------QPLERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSW 361
Query: 847 VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 906
+ +K K +F +F ++++ KI + D GGEF + F + HGI + S
Sbjct: 362 IYPLKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSC 421
Query: 907 PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTA- 965
P TPQQNG+ ERK+R L E+ +M+ ++++ FW EA T+ ++ N + + E +
Sbjct: 422 PHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTANFLINLLPTSALKESISP 481
Query: 966 YELFKGRRPNISYFHQFGCTCYILNTKDYLK-KFDAKAQRGIFLGYSERSKAYRVYNSET 1024
YE ++P+ + FG C+ +DY + KF+ + + +FLGY+E+ K YR T
Sbjct: 482 YEKLYDKKPDYTSLRSFGSACFP-TLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPT 540
Query: 1025 QCVEESMHVKFDDR-----------EPESKTS------EQSESNAGTTDSEDASES---- 1063
+ S HV FD+ P+ +T S+S A +T + +S S
Sbjct: 541 GRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFT 600
Query: 1064 --DQPSDSEKYTEVESSPEAEITPEAESNSEAEPSPKVQNE-----------------SA 1104
D P ++ T + + + SN + SP +E A
Sbjct: 601 SADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHSSQA 660
Query: 1105 SEDFQDNTQQV-IQPKFKHKSSHHEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTV 1163
D ++ QQ + H S++ ++ +K + + L +S EPKTV
Sbjct: 661 GSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRY---VFLSHKVSYPEPKTV 717
Query: 1164 EEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKAR 1223
AL GW AM EE+ W LVP +++G+KWVFR KL+ G + + KAR
Sbjct: 718 TAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKAR 777
Query: 1224 LVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVY 1283
+VA+G+ Q+EGIDY ET++PV R +RL+L A + QMDVK+AFL+G ++E VY
Sbjct: 778 IVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVY 837
Query: 1284 VKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1343
+ QP GF D P+HV L KS+YGLKQ+PRAW+D+ S FL++ F + D +LF
Sbjct: 838 MTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAH 897
Query: 1344 KKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1403
+++++ +YVDD++ ++ + EF M+ MG+L +FLGIQ+ + + G+++
Sbjct: 898 NNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFM 957
Query: 1404 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRP 1463
Q KY ++LL +E C + TP+ D +R + G L YLT +RP
Sbjct: 958 SQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRP 1017
Query: 1464 DILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGD 1523
DI F+V + P S +KRI RY+KGT +G+ Y + L + D+D+
Sbjct: 1018 DIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNC 1077
Query: 1524 RIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQI 1583
+ R+S G C F+G NL+SW+SKK T++ S+ EAEY S ++ +++LW+ L + +I
Sbjct: 1078 KQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRI 1137
Query: 1584 NANSIP-IYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWAD 1642
P ++CDN +A+ L+ NP H+R KH +I HF+R+ V L ++ I Q AD
Sbjct: 1138 PLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIAD 1197
Query: 1643 IFTKPLSVERFDFIKKNLNM 1662
IFTK L E F ++ L +
Sbjct: 1198 IFTKSLPYEAFIHLRGKLGV 1217
>At1g26990 polyprotein, putative
Length = 1436
Score = 507 bits (1306), Expect = e-143
Identities = 338/1018 (33%), Positives = 523/1018 (51%), Gaps = 78/1018 (7%)
Query: 658 KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYD-VTFSKTNCTLVNKDDKSI 716
K++G ++S++NV + K NLLS+S V+F+ C + + +
Sbjct: 458 KIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELM 517
Query: 717 TFKGKRVENVYKINFS-DLADQ-----KVVCLLSMNDKKWVWHKRLGHANWRLISKISKL 770
KG +V N+Y +N L D K VC N+ + +WHKRLGH ++ +KI L
Sbjct: 518 LGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESE-MWHKRLGHPSF---AKIDTL 573
Query: 771 QLVKGLPNIDYHSDAL-CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLY 829
V LP + D+ C C K FKS + + + EL+HID +GP + ++
Sbjct: 574 SDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVD 632
Query: 830 GSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENE 889
+Y L IVDD+SR TW+ +K K VF SF ++++ K+ VRSD+ E +
Sbjct: 633 SYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFN 692
Query: 890 PFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSC 949
ELF K GI + P TP+QN VVERK++ L +AR ++ ++ + +W + V T+
Sbjct: 693 --ELFA-KEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAV 749
Query: 950 YIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLG 1009
++ NR+ + +T YE +P+ S FGC CY + KFD +A+ IFLG
Sbjct: 750 FLINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLG 809
Query: 1010 YSERSKAYRVYNSETQCVEESMHVKF-DDREPESKTSEQSESNAGTTDSEDASESDQPSD 1068
Y K Y++ + ET V S HV F +D P + ++ +D D
Sbjct: 810 YPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNI----------------TDAAKD 853
Query: 1069 SEKYTEVESSPEAEITPEAESNSEAEPSPKVQNESASEDF----QDNTQQVIQPKFKHKS 1124
+ + + E P +S+S+A P +ES+S F +T+Q P
Sbjct: 854 FFPHIYLPAPNNDEHLPLVQSSSDA---PHNHDESSSMIFVPSEPKSTRQRKLPSHLQDF 910
Query: 1125 SHHEELIIGSKDSPRRTRSHFRQE---ESLIGLLSIIE----PKTVEEALSDDGWILAMQ 1177
+ +K SP ++ E ++II P+ EA D W AM
Sbjct: 911 HCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMG 970
Query: 1178 EELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDY 1237
+E++ F R W + P K +G KW+ K G + R+KARLVA+GY+QQEGID+
Sbjct: 971 KEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDF 1030
Query: 1238 TETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPN 1297
TF+PVA++ +++LLS A L+Q+D+ +A LNG +EEE+Y+K PPG+ +++
Sbjct: 1031 FNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQ--- 1087
Query: 1298 HVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDI 1357
G + +P A + D TLF + L+V +YVDDI
Sbjct: 1088 ----------GQEVSPNA---------------KCHGDHTLFVKAQDGFFLVVLVYVDDI 1122
Query: 1358 IFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFK 1417
+ ST + E + + F++ +GE KFFLGI+I ++ +G+ + Q KY +LL
Sbjct: 1123 LIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSD 1182
Query: 1418 LEDCKVMNTPMHPTCTLSKEDTGTVV-DQKLYRGMIGSLLYLTASRPDILFSVCLCARFQ 1476
DCK + PM P LSK DTGT++ D K YR ++G L YL +RPDI F+V A++
Sbjct: 1183 FSDCKPSSIPMEPNQKLSK-DTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYS 1241
Query: 1477 SDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQF 1536
S P + HL A+ +I RYLKGT GL Y ++ L GF D+D+ R+ +G F
Sbjct: 1242 SAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIF 1301
Query: 1537 LGENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQIN-ANSIPIYCDNT 1595
+G +L+SW SKKQ ++MS+AEAEY + + +L+W+ + L ++I + +YCDN
Sbjct: 1302 VGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNE 1361
Query: 1596 AAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
AA+ ++ N + H R KHIE H +R+ ++ GIL F+ T++Q AD TKPL + F
Sbjct: 1362 AALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPF 1419
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 503 bits (1294), Expect = e-142
Identities = 323/1013 (31%), Positives = 538/1013 (52%), Gaps = 62/1013 (6%)
Query: 671 ISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKIN 730
+ + NV + + NLLS+ F +GY +F N TL S+ +R +Y +
Sbjct: 341 VRLTNVRYIPEMDRNLLSLGTFEKSGY--SFKLENGTLSIIAGDSVLLTVRRCYTLYLLQ 398
Query: 731 FSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDA-LCGA 789
+ + ++ + ++ D +WH+RLGH + K L L KGL + S C
Sbjct: 399 WRPVTEESL-SVVKRQDDTILWHRRLGHMS----QKNMDLLLKKGLLDKKKVSKLETCED 453
Query: 790 CQKGKIVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVK 848
C GK + F T LE +H DL+G P SL +Y + +DDY+R +
Sbjct: 454 CIYGKAKRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIY 512
Query: 849 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPR 908
F+K+KD A + F + ++++ + +I +R+D+G EF N F+ FC + GIL +
Sbjct: 513 FLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAY 572
Query: 909 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYEL 968
TPQQNGV ER NRTL E R+M+ ++ L K FWAEA +T+ + N+ + + +
Sbjct: 573 TPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKR 632
Query: 969 FKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVE 1028
+ G+ P SY +FGC ++ +T D K + +A++GI +GY K Y+++ E +
Sbjct: 633 WSGKSPIYSYLRRFGCIAFV-HTDD--GKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCV 689
Query: 1029 ESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEIT---- 1084
S +V F +++ S S+DA + + + Y +++ E IT
Sbjct: 690 VSRNVIF----------QENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGD 739
Query: 1085 -PEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRTRS 1143
P E+ S PSP ++ SE T +IQ + +L+ +D RRT
Sbjct: 740 DPIVEAQSPFNPSPAT-TQTYSEGVNSETD-IIQSPLSY------QLV---RDRDRRTIR 788
Query: 1144 ---HFRQEESLIGLLSI------IEPKTVEEA---LSDDGWILAMQEELNQFQRNDVWDL 1191
F E+ L L IEP EA ++ + W LAM EE+ +N W +
Sbjct: 789 APVRFDDEDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTV 848
Query: 1192 VPKPFQKNIIGTKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1250
V +P + +IG++W+++ KL G E R KARLVA+GY+Q++GIDY E FAPV + +I
Sbjct: 849 VKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSI 908
Query: 1251 RLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLK 1310
R+L+S + L Q+DVK+AFL+G ++E++Y+ P G+E++ + V L KSLYGLK
Sbjct: 909 RILMSIVAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLK 968
Query: 1311 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILI-VQIYVDDIIFGSTNASLCKE 1369
QAP+ W ++ + ++ + F R D+ + + L + + +YVDD++ + N +
Sbjct: 969 QAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQ 1028
Query: 1370 FSKLMQDEFEMSMMGELKFFLGIQI--NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1427
+ + F+M +G K LG++I N+ + +++ Q Y ++L+ + + + K + TP
Sbjct: 1029 LKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTP 1088
Query: 1428 MHP-----TCTLSKEDTGTVVDQKL-YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPR 1480
+ T+ K++ + + Y +GS++Y + +RPD+ + V + +R+ S P
Sbjct: 1089 LGAHLKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPA 1148
Query: 1481 ESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGEN 1540
H VK + RY+KG+ L Y++S D+K++G+CDAD+A + R+S +G LG +
Sbjct: 1149 REHWLGVKWVLRYIKGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGS 1208
Query: 1541 LISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICL 1600
ISW S +Q +A+ST EAEY+S + +WMK L+++ S+ I+CD+ +AI L
Sbjct: 1209 TISWKSGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIAL 1268
Query: 1601 SKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1653
SKN + H R KHI++++ +IRD + G D+ IDTE ADIFTK + V +F
Sbjct: 1269 SKNNVHHERTKHIDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKF 1321
Score = 48.1 bits (113), Expect = 4e-05
Identities = 56/226 (24%), Positives = 103/226 (44%), Gaps = 20/226 (8%)
Query: 33 KFNGDPEEFSWWKTNMYSF--IMGLDEELW--DILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
KF+G + ++ WK + + I+GL L D L + V ++ L EE + + +
Sbjct: 10 KFDGRGD-YTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEE----EEKEEVLRR 64
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL--MLV 146
+ L +K K R IV S+ K+ + +A AM L K+ +KAL +
Sbjct: 65 ELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVL-------DKLYMSKALPNRIY 117
Query: 147 HQYEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTA 204
+ +L F+M ++ SIE F +++ L+ D +L SLP +
Sbjct: 118 QKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDT 177
Query: 205 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKT 250
++ TLS++++V+++ E+ L ++ S K ++ L K KT
Sbjct: 178 LKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKT 223
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 501 bits (1290), Expect = e-141
Identities = 316/1020 (30%), Positives = 532/1020 (51%), Gaps = 70/1020 (6%)
Query: 669 SSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYK 728
S+I + +V + + NL+S+ D G K T+ D +T GK+ +Y
Sbjct: 364 STILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLT--GKKESTLYF 421
Query: 729 INFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCG 788
+ + LA + V + D+ +WH RLGH + LQ++ ++D
Sbjct: 422 LQGTTLAGEANV-IDKEKDETSLWHSRLGHIGAK------GLQVLVSKGHLD-------- 466
Query: 789 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGS-KYGLVIVDDYSRWTWV 847
K + SF + V+ + L+ +H DL+G N G +Y + +DD++R TW+
Sbjct: 467 -----KNIMISFGAAKHVTKDK-LDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWI 520
Query: 848 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSP 907
FI++KD A F + TQI+++++ K+ + +D+G EF N+ F+ FC K G++ +
Sbjct: 521 YFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCA 580
Query: 908 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYE 967
TPQQNGV ER NRT+ R M+ E+ L K FWAEA +T+ ++ N+ + E
Sbjct: 581 YTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEE 640
Query: 968 LFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCV 1027
+ G P+ +FG YI + + K + +A++GIFLGY + K ++V+ E +
Sbjct: 641 KWTGHPPDYKILKKFGSVAYIHSDQG---KLNPRAKKGIFLGYPDGVKRFKVWLLEDRKC 697
Query: 1028 EESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEA 1087
S + F + + ++ ++D + ++ TEVE + A
Sbjct: 698 VVSRDIVFQENQMY----------------KELQKNDMSEEDKQLTEVERTLIELKNLSA 741
Query: 1088 ESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSKDSPRRT----RS 1143
+ +++E E AS + + ++ L+ ++D RR +
Sbjct: 742 DDENQSEGGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLL--ARDRIRRQIRAPQR 799
Query: 1144 HFRQEESLIGLL-------SIIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVP 1193
+++SL+G + EP+T EEA+ + W A EE++ ++ND WD++
Sbjct: 800 FVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVID 859
Query: 1194 KPFQKNIIGTKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRL 1252
KP K +IG KW+F+ K G E R KARLVA+G+SQ+EGIDY E F+PV + +IR
Sbjct: 860 KPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRY 919
Query: 1253 LLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQA 1312
LLS + + L Q+DVK+AFL+G ++E + + QP G+ED V LKKSLYGLKQ+
Sbjct: 920 LLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQS 979
Query: 1313 PRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILI-VQIYVDDIIFGSTNASLCKEFS 1371
PR W R +F+I + ++R + + ++ + L I + +YVDD++ S N ++
Sbjct: 980 PRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLK 1039
Query: 1372 KLMQDEFEMSMMGELKFFLGIQINQSKE-GVY-VHQTKYTKELLKKFKLEDCKVMNTPMH 1429
+ + EFEM +G + LG++I +++E G+ + Q++Y +L+ F ++ KV TP+
Sbjct: 1040 ESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLG 1099
Query: 1430 PTCTLSKEDTGTVVDQKLYRGM------IGSLLY-LTASRPDILFSVCLCARFQSDPRES 1482
L + T+ Y + IGS++Y + SRPD+ + V + +RF S P +
Sbjct: 1100 AHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKE 1159
Query: 1483 HLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLI 1542
H AVK + RY+KGT + L ++K +++ G+CD+DYA D R+S +G G N I
Sbjct: 1160 HWQAVKWVMRYMKGTQDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTI 1219
Query: 1543 SWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSK 1602
SW S Q +A+ST EAEY++ A + +W++ + +++ + CD+ +AI LSK
Sbjct: 1220 SWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSK 1279
Query: 1603 NPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
N + H R KHI++++HFIR+ + G + + I T ADIFTK + V + K L +
Sbjct: 1280 NSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339
Score = 52.0 bits (123), Expect = 3e-06
Identities = 57/250 (22%), Positives = 104/250 (40%), Gaps = 19/250 (7%)
Query: 28 SGKAP--KFNGDPEEFSWWKT-----NMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 80
SG+A KF+GD + W + M + GL EE ++ED ++ +G D
Sbjct: 3 SGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEIS---DGGNQD 59
Query: 81 RRIHTPA--QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVK 138
T K L +K K R I+ S+ K+ + TA M L F
Sbjct: 60 PETATSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPN 119
Query: 139 EAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRW 198
++ Y +M ++ ++EE + F L+S L+ +K D +L SLP ++
Sbjct: 120 RIYLKQRLYGY---KMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQF 176
Query: 199 RPKVTAIEEAKDLNTLSVEDLVSSL--KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKA 256
++ K TL +E++ S++ K+ E+ + S + + +G++ K
Sbjct: 177 DQLKETLKYCK--TTLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKG 234
Query: 257 YKASESEEES 266
++S +S
Sbjct: 235 PNKNKSRSKS 244
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,757,605
Number of Sequences: 26719
Number of extensions: 1707871
Number of successful extensions: 8278
Number of sequences better than 10.0: 443
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 6550
Number of HSP's gapped (non-prelim): 1378
length of query: 1667
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1554
effective length of database: 8,299,349
effective search space: 12897188346
effective search space used: 12897188346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC147435.7