BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147434.11 - phase: 0
(150 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59720 heat shock protein 18 236 3e-63
At3g46230 heat shock protein 17 232 6e-62
At1g53540 17.6 kDa heat shock protein (AA 1-156) 228 9e-61
At2g29500 putative small heat shock protein 223 4e-59
At1g07400 heat shock like protein 222 5e-59
At1g59860 unknown protein 219 4e-58
At4g10250 heat shock protein 22.0 135 8e-33
At5g37670 low-molecular-weight heat shock protein - like 115 1e-26
At5g12020 heat shock protein 17.6-II 100 2e-22
At5g12030 heat shock protein 17.6A 100 3e-22
At4g27670 heat shock protein 21 78 2e-15
At4g21870 heat shock protein - like 77 3e-15
At4g25200 Arabidopsis mitochondrion-localized small heat shock p... 75 2e-14
At1g52560 71 2e-13
At5g51440 mitochondrial heat shock 22 kd protein-like 68 2e-12
At2g19310 putative small heat shock protein 67 4e-12
At1g54050 unknown protein 67 5e-12
At5g04890 unknown protein 58 2e-09
At1g76770 putative heat shock protein 54 3e-08
At5g54660 unknown protein 54 4e-08
>At5g59720 heat shock protein 18
Length = 161
Score = 236 bits (603), Expect = 3e-63
Identities = 116/159 (72%), Positives = 130/159 (80%), Gaps = 9/159 (5%)
Query: 1 MSLIPSFFGGRQNNVFDPFSMDIWDPLQGF---------PSSARETTALANTRVDWKETQ 51
MSLIPS FGGR++NVFDPFS D+WDP +GF S+AR+ A N RVDWKET
Sbjct: 1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETP 60
Query: 52 EAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRL 111
EAHVF DLPGLKKEEVKVE+ED NVLQISGER+KE EEK+DKWHRVER+SGKFMRRFRL
Sbjct: 61 EAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRL 120
Query: 112 PENVKMDQVKAGMENGVLTVTVPKEEEKKSEVKSIEISG 150
PEN KM++VKA MENGVLTV VPK EKK +VKSI+ISG
Sbjct: 121 PENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159
>At3g46230 heat shock protein 17
Length = 156
Score = 232 bits (591), Expect = 6e-62
Identities = 108/156 (69%), Positives = 129/156 (82%), Gaps = 6/156 (3%)
Query: 1 MSLIPSFFGGRQNNVFDPFSMDIWDPLQGF------PSSARETTALANTRVDWKETQEAH 54
MSL+PSFFGGR+ NVFDPFS+D+WDP +GF + A++ A N +VDW+ET EAH
Sbjct: 1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAH 60
Query: 55 VFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPEN 114
VF D+PGLKKEEVKVE+EDGN+LQISGER+ E EEK D WHRVERSSGKFMRRFRLPEN
Sbjct: 61 VFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPEN 120
Query: 115 VKMDQVKAGMENGVLTVTVPKEEEKKSEVKSIEISG 150
K+++VKA MENGVL+VTVPK +E K EVKS++ISG
Sbjct: 121 AKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156
>At1g53540 17.6 kDa heat shock protein (AA 1-156)
Length = 157
Score = 228 bits (581), Expect = 9e-61
Identities = 111/157 (70%), Positives = 129/157 (81%), Gaps = 7/157 (4%)
Query: 1 MSLIPSFFGGRQNNVFDPFSMDIWDPLQGF--PSS-----ARETTALANTRVDWKETQEA 53
MSLIPS FGGR+ NVFDPFS+D++DP +GF PS A + A N +VDW+ET EA
Sbjct: 1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEA 60
Query: 54 HVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPE 113
HVF DLPGL+KEEVKVE+EDGN+LQISGER+ E EEK+DKWHRVERSSGKF RRFRLPE
Sbjct: 61 HVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPE 120
Query: 114 NVKMDQVKAGMENGVLTVTVPKEEEKKSEVKSIEISG 150
N KM+++KA MENGVL+VTVPK EKK EVKSI+ISG
Sbjct: 121 NAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157
>At2g29500 putative small heat shock protein
Length = 153
Score = 223 bits (567), Expect = 4e-59
Identities = 109/153 (71%), Positives = 131/153 (85%), Gaps = 3/153 (1%)
Query: 1 MSLIPSFFGG-RQNNVFDPFSMDIWDPLQGFPSSA--RETTALANTRVDWKETQEAHVFS 57
MS+IPSFF R++N+FDPFS+D+WDP + SS+ RE +A+ N RVDW+ET EAHVF
Sbjct: 1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFK 60
Query: 58 VDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPENVKM 117
DLPGLKKEEVKVEIE+ +VL+ISGER+ E+E+K+D WHRVERSSG+F RRFRLPENVKM
Sbjct: 61 ADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKM 120
Query: 118 DQVKAGMENGVLTVTVPKEEEKKSEVKSIEISG 150
DQVKA MENGVLTVTVPK E KK++VKSI+ISG
Sbjct: 121 DQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153
>At1g07400 heat shock like protein
Length = 157
Score = 222 bits (566), Expect = 5e-59
Identities = 114/157 (72%), Positives = 133/157 (84%), Gaps = 7/157 (4%)
Query: 1 MSLIPSFFGG--RQNNVFDPFSMDIWDPLQG--FPSS-ARETTALANTRVDWKETQEAHV 55
MSLIPSFFG R N++FDPFS+D+WDP + FPSS + ET+A+ N RVDWKET EAHV
Sbjct: 1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHV 60
Query: 56 FSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPENV 115
F DLPG+KKEEVKVEIED +VL+ISGER+ E+EEK D WHRVERSSG+F R+F+LPENV
Sbjct: 61 FKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENV 120
Query: 116 KMDQVKAGMENGVLTVTVPKEEE--KKSEVKSIEISG 150
KMDQVKA MENGVLTVTVPK EE KK++VKSI+ISG
Sbjct: 121 KMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157
>At1g59860 unknown protein
Length = 155
Score = 219 bits (558), Expect = 4e-58
Identities = 109/155 (70%), Positives = 128/155 (82%), Gaps = 5/155 (3%)
Query: 1 MSLIPSFFGGRQ---NNVFDPFSMDIWDPLQGFPSSARETTALANTRVDWKETQEAHVFS 57
MSLIPSFFG + NN+FDPFS+D+WDP + + ++A+AN RVDWKET EAHVF
Sbjct: 1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFK 60
Query: 58 VDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPENVKM 117
DLPG+KKEEVKVEIED +VL+ISGER+ E+EEK D WHRVERSSG F R+FRLPENVKM
Sbjct: 61 ADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKM 120
Query: 118 DQVKAGMENGVLTVTVPKEE--EKKSEVKSIEISG 150
DQVKA MENGVLTVTVPK E +KK++VKSI+ISG
Sbjct: 121 DQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155
>At4g10250 heat shock protein 22.0
Length = 195
Score = 135 bits (340), Expect = 8e-33
Identities = 66/126 (52%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 17 DPFSMDIWDPLQGFPSSARETT--ALANTRVDWKETQEAHVFSVDLPGLKKEEVKVEIED 74
DPF + L+ P T AL+ RVDWKET E H +D+PGLKK+EVK+E+E+
Sbjct: 48 DPFKI-----LERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEE 102
Query: 75 GNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPENVKMDQVKAGMENGVLTVTVP 134
VL++SGER +E+E+K D+WHRVERS GKF R+F+LP+NV M+ VKA +ENGVLT+ +
Sbjct: 103 NGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLT 162
Query: 135 KEEEKK 140
K +K
Sbjct: 163 KLSPEK 168
>At5g37670 low-molecular-weight heat shock protein - like
Length = 137
Score = 115 bits (287), Expect = 1e-26
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 11/130 (8%)
Query: 26 PLQGFPSSARETTALANTRVDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERN 85
P + F +R T +DW E+ +H+F +++PG KE++KV+IE+GNVL I GE
Sbjct: 10 PFRRFQEWSRSTAL-----IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGI 64
Query: 86 KEQEEKDDKWHRVERSS-----GKFMRRFRLPENVKMDQVKAGMENGVLTVTVPKE-EEK 139
KE+++++ WH ER + +F+RR LPENVK+DQVKA +ENGVLTV VPK+ K
Sbjct: 65 KEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSK 124
Query: 140 KSEVKSIEIS 149
S+V+++ I+
Sbjct: 125 SSKVRNVNIT 134
>At5g12020 heat shock protein 17.6-II
Length = 155
Score = 100 bits (250), Expect = 2e-22
Identities = 52/119 (43%), Positives = 79/119 (65%), Gaps = 4/119 (3%)
Query: 35 RETTALANTRVDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDD- 93
R+ A+A T D E A+ F VD+PG+K +E+KV++E+ NVL +SGER +E +E +
Sbjct: 37 RDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGV 96
Query: 94 KWHRVERSSGKFMRRFRLPENVKMDQVKAGMENGVLTVTV---PKEEEKKSEVKSIEIS 149
K+ R+ER GKFMR+F+LPEN +D++ A +GVL VTV P E KK + ++++
Sbjct: 97 KYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155
>At5g12030 heat shock protein 17.6A
Length = 156
Score = 100 bits (249), Expect = 3e-22
Identities = 52/125 (41%), Positives = 86/125 (68%), Gaps = 6/125 (4%)
Query: 31 PSSA--RETTALANTRVDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQ 88
PS A R+ A+A T D E +A+VF+VD+PG+K +E++V+IE+ NVL +SG+R ++
Sbjct: 32 PSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDN 91
Query: 89 EEKDD-KWHRVERSSGKFMRRFRLPENVKMDQVKAGMENGVLTVTVPK---EEEKKSEVK 144
+E + K+ R+ER GKFMR+F+LP+N ++++ A +GVL VT+PK E KK +
Sbjct: 92 KENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTI 151
Query: 145 SIEIS 149
++++
Sbjct: 152 QVQVA 156
>At4g27670 heat shock protein 21
Length = 227
Score = 78.2 bits (191), Expect = 2e-15
Identities = 42/111 (37%), Positives = 67/111 (59%), Gaps = 7/111 (6%)
Query: 35 RETTALANTRVDWKETQEAHVFSV--DLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKD 92
R + ++ R W +E H + D+PGL KE+VK+ +ED NVL I GE+ KE + D
Sbjct: 117 RGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVED-NVLVIKGEQKKE--DSD 173
Query: 93 DKWHRVERSSGKFMRRFRLPENVKMDQVKAGMENGVLTVTVPKEEEKKSEV 143
D W RS + R +LP+N + D++KA ++NGVL +T+PK + ++ +
Sbjct: 174 DSWSG--RSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVI 222
>At4g21870 heat shock protein - like
Length = 134
Score = 77.4 bits (189), Expect = 3e-15
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 45 VDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGK 104
V W ++ ++H FSVDLPGL+KEE+KVEIED L I E ++
Sbjct: 28 VRWSQSPDSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPP--------DQPLKT 79
Query: 105 FMRRFRLPENVKMDQVKAGMENGVLTVTVPK 135
F R+FRLPE++ M + AG E+GVLTV VPK
Sbjct: 80 FKRKFRLPESIDMIGISAGYEDGVLTVIVPK 110
>At4g25200 Arabidopsis mitochondrion-localized small heat shock
protein (AtHSP23.6-mito)
Length = 210
Score = 74.7 bits (182), Expect = 2e-14
Identities = 52/159 (32%), Positives = 88/159 (54%), Gaps = 18/159 (11%)
Query: 4 IPSFFGGRQNNVFDPFS--------MDIWDPLQGFPS-SARETTALANTRVDW--KETQE 52
+P G ++VFDPFS +++ D P SA + R W KE +
Sbjct: 57 VPRRRGDFFSDVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDD 116
Query: 53 AHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLP 112
A +D+PGL +E+VK+ +E + L I GE E++ ++ E + +F R LP
Sbjct: 117 ALYLRIDMPGLSREDVKLALEQ-DTLVIRGEGKNEEDGGEEG----ESGNRRFTSRIGLP 171
Query: 113 ENV-KMDQVKAGMENGVLTVTVPK-EEEKKSEVKSIEIS 149
+ + K+D++KA M+NGVL V +PK +E+++++V+ IEI+
Sbjct: 172 DKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210
>At1g52560
Length = 232
Score = 70.9 bits (172), Expect = 2e-13
Identities = 35/105 (33%), Positives = 62/105 (58%), Gaps = 7/105 (6%)
Query: 48 KETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGERNKEQE----EKDDKWHRVERSSG 103
KE + + ++PGL KE+VK+ + DG +L I G+ E+E E+D+ W +S G
Sbjct: 130 KEQDDCYKLRYEVPGLTKEDVKITVNDG-ILTIKGDHKAEEEKGSPEEDEYWS--SKSYG 186
Query: 104 KFMRRFRLPENVKMDQVKAGMENGVLTVTVPKEEEKKSEVKSIEI 148
+ LP++ K++ +KA ++NGVL + +P+ E+ K V+ I +
Sbjct: 187 YYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQEISV 231
>At5g51440 mitochondrial heat shock 22 kd protein-like
Length = 210
Score = 68.2 bits (165), Expect = 2e-12
Identities = 50/149 (33%), Positives = 79/149 (52%), Gaps = 20/149 (13%)
Query: 13 NNVFDPFS--------MDIWDPLQGFPS-SARETTALANTRVDW--KETQEAHVFSVDLP 61
+++ DPF+ ++ D + P SA + R W KE +A +D+P
Sbjct: 68 SHILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMP 127
Query: 62 GLKKEEVKVEIEDGNVLQISGERNKEQEEKDDKWHRVERSSGKFMRRFRLPENV-KMDQV 120
GL +E+VK+ +E N L I GE E EE +D V +F R LPE V K D++
Sbjct: 128 GLSREDVKLALEQ-NTLVIRGEG--ETEEGED----VSGDGRRFTSRIELPEKVYKTDEI 180
Query: 121 KAGMENGVLTVTVPK-EEEKKSEVKSIEI 148
KA M+NGVL V +PK +E++++ ++ I +
Sbjct: 181 KAEMKNGVLKVVIPKIKEDERNNIRHINV 209
>At2g19310 putative small heat shock protein
Length = 162
Score = 67.0 bits (162), Expect = 4e-12
Identities = 47/136 (34%), Positives = 66/136 (47%), Gaps = 33/136 (24%)
Query: 30 FPSSARE-----TTALANTRVDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQISGER 84
FPS +RE +++ NT+++W ET AHVF LPG+ ++EV +++ LQI
Sbjct: 42 FPSLSREIFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGD 101
Query: 85 NKEQEEKDDKWHRVERSSGKFMRRFRLPENVKMDQVKAGMENGVLTVTVPK--------- 135
N KFM RF+LP N DQV A ME+ L V V K
Sbjct: 102 N------------------KFMSRFKLPNNALTDQVTAWMEDEFLVVFVEKDASSSPPQL 143
Query: 136 -EEEKKSEVKSIEISG 150
E E+ V+ +EI+G
Sbjct: 144 PEIEENRNVRVVEITG 159
>At1g54050 unknown protein
Length = 155
Score = 66.6 bits (161), Expect = 5e-12
Identities = 35/113 (30%), Positives = 70/113 (60%), Gaps = 5/113 (4%)
Query: 42 NTRVDWKETQEAHVFSVDLPGLKKEEVKVEIEDGNVLQI--SGERNKEQEEKDD--KWHR 97
N +D E+ + ++F +D+PG+ K +++V +E+ L I +G+R ++ +E ++ K+ R
Sbjct: 41 NIPIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIR 100
Query: 98 VERSSGK-FMRRFRLPENVKMDQVKAGMENGVLTVTVPKEEEKKSEVKSIEIS 149
+ER + +++FRLPE+ M V A + GVLTV + K + + K+++I+
Sbjct: 101 LERRLAQNLVKKFRLPEDADMASVTAKYQEGVLTVVIKKLPPQPPKPKTVQIA 153
>At5g04890 unknown protein
Length = 366
Score = 58.2 bits (139), Expect = 2e-09
Identities = 30/92 (32%), Positives = 51/92 (54%), Gaps = 12/92 (13%)
Query: 46 DWKETQEAHVFSVDLPGLKKEEVKVE-IEDGNVLQISGERNKEQEEKDDKWHRVERSSGK 104
+WK+ EA + ++DL G KE++KV + +++++GER KW R
Sbjct: 24 EWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANR----KWSR------- 72
Query: 105 FMRRFRLPENVKMDQVKAGMENGVLTVTVPKE 136
F F +P+N +D++ +N VLT+T+PKE
Sbjct: 73 FNEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104
>At1g76770 putative heat shock protein
Length = 244
Score = 53.9 bits (128), Expect = 3e-08
Identities = 37/113 (32%), Positives = 64/113 (55%), Gaps = 17/113 (15%)
Query: 48 KETQEAHVFSVDLPGLKKEEVKVEI-EDGNVLQISGERNKEQEE--KDDKWHRVERSSGK 104
+ET + L G KK+ + +EI ++GN+++ISG + E+ K +W + E +
Sbjct: 36 RETNSVFFLILHLKGFKKDGIDIEINKEGNLIKISGRKQVEEMVLVKWVEWKK-ETEIKE 94
Query: 105 FMRRFRLPENVKMDQVKA--GMENGVLTVTVPK-----------EEEKKSEVK 144
F + FR+P+ V +D++KA E+G LTVT+PK EE+++ E+K
Sbjct: 95 FKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKVKGITGLKIEEEDEEEEMK 147
>At5g54660 unknown protein
Length = 192
Score = 53.5 bits (127), Expect = 4e-08
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 12 QNNVFDPFSMD-IWDPLQGFPSSARETT-------ALANTRVDWKETQEAHVFSVDLPGL 63
+ ++F PF +DP FP E +L RVDW +T +A+V D+P +
Sbjct: 48 EGSLFSPFLFGKYFDPSDAFPLWEFEAEVLLASLRSLGQCRVDWSQTDQAYVLKSDIPVV 107
Query: 64 KKEEVKVEIE-DGNVLQISGERNKEQE-EKDDKWHRVERSSGKFMRRFRLPENVKMDQVK 121
K V+V ++ +G V++ISG+ N ++ + W ++RR LP + +
Sbjct: 108 GKNNVQVYVDINGRVMEISGQWNSNKKAATNSDWRSGRWWEHGYVRRLELPSDADAKYSE 167
Query: 122 AGMEN----GVLTVTVPKEEEK 139
A + N L + +PK K
Sbjct: 168 AFLSNNDDYSFLEIRIPKINSK 189
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.312 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,588,814
Number of Sequences: 26719
Number of extensions: 155054
Number of successful extensions: 632
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 108
length of query: 150
length of database: 11,318,596
effective HSP length: 90
effective length of query: 60
effective length of database: 8,913,886
effective search space: 534833160
effective search space used: 534833160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC147434.11