BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147364.11 - phase: 0
(184 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44222 hypothetical protein 32 0.25
At5g09530 periaxin - like protein 29 1.2
At4g02430 unknown protein 29 1.6
At2g24590 RSZp22 splicing factor like protein 29 1.6
At3g53340 transcription factor NF-Y, CCAAT-binding - like protein 28 2.8
At2g29210 proline-rich protein like 28 3.6
At3g22611 predicted GPI-anchored protein 27 4.7
At2g17820 histidine kinase 1 27 6.2
At3g49430 PRE-MRNA SPLICING FACTOR SF2-like protein 27 8.1
>At1g44222 hypothetical protein
Length = 220
Score = 31.6 bits (70), Expect = 0.25
Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 8/86 (9%)
Query: 49 LSLPVM--GRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRTTEGPLMPRTMEGLL 106
LS PV+ G + P +P + +P++P + P + E P +PR P +P
Sbjct: 59 LSPPVLLPGFPSIPWLPNIPGIPIIPSLPNIPSLPTIPEIPNIPRIPNIPGLPN------ 112
Query: 107 VPRTTEGPLVSRTREGPPVPRRMAEV 132
+P P + R PP+P +EV
Sbjct: 113 IPGLPNLPSIPRIPGLPPLPWVKSEV 138
>At5g09530 periaxin - like protein
Length = 370
Score = 29.3 bits (64), Expect = 1.2
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 49 LSLPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRTTEGPLMPRTMEGLLVP 108
L P + + P +P+M E+P +P + + P + + P VP+ E P +P + L P
Sbjct: 208 LEAPKVPEIQKPELPKMPELPKMPEIQK----PELPKLPEVPK-LEAPKVPEIQKPEL-P 261
Query: 109 RTTEGPLVSRTREGPPVPRRMAEVQ 133
+ E P + ++ P +P +M E+Q
Sbjct: 262 KMPELPKMPEIQK-PELP-KMPEIQ 284
>At4g02430 unknown protein
Length = 294
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/35 (48%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
Query: 8 GSGRSGGGGSRRRARSRSP-RRSRYRWVGMIIPQS 41
G GR G GG R R P RRS YR V +P S
Sbjct: 96 GRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLPSS 130
>At2g24590 RSZp22 splicing factor like protein
Length = 196
Score = 28.9 bits (63), Expect = 1.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 13 GGGGSRRRARSRSPRRSRYR 32
GG G RRR+RSRS RYR
Sbjct: 115 GGSGGRRRSRSRSRSPPRYR 134
>At3g53340 transcription factor NF-Y, CCAAT-binding - like protein
Length = 228
Score = 28.1 bits (61), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 13 GGGGSRRRARSRSPRRSRYRWVGMIIPQSDQDLILGLSLPVMGRMTGPLVPRMTE 67
GGGGS +SPR R +P ++ I+ LP+ G++ M E
Sbjct: 9 GGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQE 63
>At2g29210 proline-rich protein like
Length = 878
Score = 27.7 bits (60), Expect = 3.6
Identities = 38/128 (29%), Positives = 44/128 (33%), Gaps = 13/128 (10%)
Query: 17 SRRRARSRSPRRS---RYRWVGMIIPQSDQDLILGLSLPV-MGRMTGPLVPRMTEVPLVP 72
SRRR+RSRS RRS R R + + I P GR P R P P
Sbjct: 257 SRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPP 316
Query: 73 RMAEGLLAP--RMMEGPLVP-RTTEGPLMPRTMEGLLVPRTTEGPLVSRTREGPPVPRRM 129
+P R P P R P P R + P R R PP RR
Sbjct: 317 ARRRRSPSPPARRRRSPSPPARRHRSPTPPARQ------RRSPSPPARRHRSPPPARRRR 370
Query: 130 AEVQLMRR 137
+ RR
Sbjct: 371 SPSPPARR 378
>At3g22611 predicted GPI-anchored protein
Length = 203
Score = 27.3 bits (59), Expect = 4.7
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 54 MGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGP-------LVPRTTEGPLMPRTMEGLL 106
+ R T +PR +P VP + +AP GP + P P++P
Sbjct: 87 INRTTAVSLPRACNMPRVPLQCQANIAPAAAPGPAATFGPSMSPGPETDPIVPEPTPAAQ 146
Query: 107 VPRT-TEGPLVSRTREGPP 124
P++ T P G P
Sbjct: 147 TPQSDTTRPFTPSVDGGAP 165
>At2g17820 histidine kinase 1
Length = 1207
Score = 26.9 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 95 GPLMPRTMEGLLVPRTTEGPLVSRTREGP 123
G + + EG L+ +T+GPL+ T GP
Sbjct: 338 GHIYLTSQEGYLLATSTDGPLLKNTSNGP 366
>At3g49430 PRE-MRNA SPLICING FACTOR SF2-like protein
Length = 300
Score = 26.6 bits (57), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (49%)
Query: 8 GSGRSGGGGSRRRARSRSPRRSRYRWVGMIIPQS 41
GSG GGGG AR R S +R + +P S
Sbjct: 99 GSGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSS 132
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.141 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,944,532
Number of Sequences: 26719
Number of extensions: 161819
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 21
length of query: 184
length of database: 11,318,596
effective HSP length: 93
effective length of query: 91
effective length of database: 8,833,729
effective search space: 803869339
effective search space used: 803869339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC147364.11