BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147202.9 + phase: 0 /pseudo
(520 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 193 2e-49
At4g09710 RNA-directed DNA polymerase -like protein 179 4e-45
At2g31520 putative non-LTR retroelement reverse transcriptase 179 4e-45
At2g25550 putative non-LTR retroelement reverse transcriptase 179 4e-45
At2g01840 putative non-LTR retroelement reverse transcriptase 177 1e-44
At1g47910 reverse transcriptase, putative 176 2e-44
At3g45550 putative protein 176 4e-44
At1g24640 hypothetical protein 171 1e-42
At2g05200 putative non-LTR retroelement reverse transcriptase 170 2e-42
At4g10830 putative protein 169 3e-42
At2g11240 pseudogene 169 3e-42
At2g17910 putative non-LTR retroelement reverse transcriptase 168 8e-42
At2g17610 putative non-LTR retroelement reverse transcriptase 167 1e-41
At2g41580 putative non-LTR retroelement reverse transcriptase 166 2e-41
At2g16680 putative non-LTR retroelement reverse transcriptase 164 1e-40
At2g15540 putative non-LTR retroelement reverse transcriptase 161 9e-40
At3g32110 non-LTR reverse transcriptase, putative 136 3e-32
At2g31080 putative non-LTR retroelement reverse transcriptase 133 3e-31
At3g31420 hypothetical protein 130 1e-30
At4g15590 reverse transcriptase like protein 121 8e-28
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 193 bits (490), Expect = 2e-49
Identities = 140/481 (29%), Positives = 223/481 (46%), Gaps = 53/481 (11%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W +L + M LGF W IM CV+SV+Y+VL+N G I+P
Sbjct: 571 IAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPS 630
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLF++C + L ++ AE + + G++V GAP +HLLF DD +C+
Sbjct: 631 RGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCK 690
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ + I+ Y ASGQ++N+ KS I+F K++ + + L + G Y
Sbjct: 691 VNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVY 750
Query: 181 LGLP-SVIGTEYG---------GRSTLGEGALYLRREKW**LNLYSNLFLPTL*V-FF*F 229
LGLP S G++ G+ LG + +L L + LPT + F
Sbjct: 751 LGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKI 810
Query: 230 PHLLVMKSRK**ILYGREMVEIEI-----RESGGFH-----------GTNYLSIKEMVVW 273
P + + E V E +E G H L KE+ +
Sbjct: 811 PKTICQQI---------ESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAF 861
Query: 274 VLRIYICSIWHFLAIKSGG*CLNRSY**QDFLKARYYRRNAIFEANKGNNLSYVWKSIHE 333
+ + +W + K + + + K+RY+ ++ A G+ S+ WKSI+E
Sbjct: 862 NIALLGKQLWRMITEKDS--LMAKVF------KSRYFSKSDPLNAPLGSRPSFAWKSIYE 913
Query: 334 AIPMVKQGTRWKIGNGDKIRVFQDRWL-VNGGLAQPAA*YNRLLQLN-------VKELLQ 385
A ++KQG R IGNG+ I V+ D W+ A A + L+ VK+LL
Sbjct: 914 AQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL 973
Query: 386 PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERVWRPGKRGIYTVRSASRFCLTEL 445
P + WN +++ + + D W + G Y+V+S + +TE+
Sbjct: 974 PDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKS-GYWVMTEI 1032
Query: 446 V 446
+
Sbjct: 1033 I 1033
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 179 bits (453), Expect = 4e-45
Identities = 90/188 (47%), Positives = 115/188 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDRI W +L+ V++RLGF KW W+M CV +V Y L+N +G ++P
Sbjct: 512 MAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPS 571
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLFILC + L+ L KA+ +G + G+RV G+P HLLF DD FC+
Sbjct: 572 RGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCK 631
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
AL NIL YE ASGQ IN KS I FS K + L+++ GKY
Sbjct: 632 TNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKY 691
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 692 LGLPEHFG 699
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 325 SYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGLAQPAA*YNRL-LQLNVKEL 383
S+ W+ I ++++G W IG GD I V+ + WL P L+V +L
Sbjct: 840 SHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDL 899
Query: 384 LQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNS-TAYDERVWRPGKRGIYTVRS 436
+ KSWN++ ++ +L + + + N+ D VW P K G YT ++
Sbjct: 900 ICHDVKSWNVEAIRKHLPQYE--DQIRKITINALPLQDSLVWLPVKSGEYTTKT 951
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 179 bits (453), Expect = 4e-45
Identities = 91/188 (48%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 727 MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 786
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI+ GDL GVR+ GAP THL F DD FC+
Sbjct: 787 RGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQ 846
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + IL++ GKY
Sbjct: 847 ANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKY 906
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 907 LGLPEQFG 914
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ +I +A SY W S+ + I ++K+GTR IG+G IR+ D +V+
Sbjct: 1041 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-IVDSH 1099
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P ++ + L + W+ + ++ L S D+
Sbjct: 1100 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 1159
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 1160 IWNYNTTGEYTVRS 1173
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 179 bits (453), Expect = 4e-45
Identities = 91/188 (48%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 953 MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 1012
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI+ GDL GVR+ GAP THL F DD FC+
Sbjct: 1013 RGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQ 1072
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + IL++ GKY
Sbjct: 1073 ANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKY 1132
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 1133 LGLPEQFG 1140
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ +I +A SY W S+ + I ++K+GTR IG+G IR+ D +V+
Sbjct: 1267 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-IVDSH 1325
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P ++ + L + W+ + ++ L S D+
Sbjct: 1326 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 1385
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 1386 IWNYNTTGEYTVRS 1399
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 177 bits (449), Expect = 1e-44
Identities = 82/186 (44%), Positives = 119/186 (63%)
Query: 3 LKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSG 62
+K D+SKAYDR+ W +L +VM++LGF +W WIM CV SV Y+VL+N G I P G
Sbjct: 935 VKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRG 994
Query: 63 LRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 122
+R+GDPLSPYLF+ CA+ L++++ KAE +HG+++ +HLLF DD FCRA+
Sbjct: 995 IRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRAS 1054
Query: 123 *REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLG 182
+ + L I YE+ASGQ+IN+ KS I F + + + + +L ++ GKYLG
Sbjct: 1055 NQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLG 1114
Query: 183 LPSVIG 188
LP +G
Sbjct: 1115 LPEQLG 1120
Score = 61.6 bits (148), Expect = 1e-09
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
K YY ANKG + SY W SI E +++QG R ++G+G ++++D WL
Sbjct: 1230 KGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPT--- 1286
Query: 366 AQPAA*YNRLL--QLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
P +L + V +L + ++ W+ + + L+ + A + L N A D
Sbjct: 1287 LPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYK 1346
Query: 424 WRPGKRGIYTVRS 436
W + YTVRS
Sbjct: 1347 WAYTRNTQYTVRS 1359
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 176 bits (447), Expect = 2e-44
Identities = 86/188 (45%), Positives = 119/188 (62%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYD++ W ++ ++ ++GF KW WIM C+ +V+YKVL+N + +G I+P
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLFILC + L + I KAE + + G++V T +P +HLLF DD FC+
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCK 474
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A + + IL YE SGQQINF KS I F V K +I IL ++ G Y
Sbjct: 475 ANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSY 534
Query: 181 LGLPSVIG 188
LGLP +G
Sbjct: 535 LGLPESLG 542
Score = 60.5 bits (145), Expect = 2e-09
Identities = 41/145 (28%), Positives = 67/145 (45%), Gaps = 3/145 (2%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
K RY+R++ ++ K + SY W+S+ A +V +G ++G+G I V+ D W +
Sbjct: 670 KGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPW-IPAQF 728
Query: 366 AQPAA*YNRLL--QLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
+PA ++ L VK L+ WN+D+L+ + V + N D
Sbjct: 729 PRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLG 788
Query: 424 WRPGKRGIYTVRSASRFCLTELVEG 448
W K G YTV+S +L EG
Sbjct: 789 WHFTKAGNYTVKSGYHTARLDLNEG 813
>At3g45550 putative protein
Length = 851
Score = 176 bits (445), Expect = 4e-44
Identities = 89/188 (47%), Positives = 111/188 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W++L M GF KW GWIM V+SV Y VL+N G I P
Sbjct: 192 MAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPT 251
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILC L+ LI GD+ GVR+ GAP THL F DD FC+
Sbjct: 252 RGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQ 311
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A R ALK++ +YE SGQ+IN QKS I F V + + +L + GKY
Sbjct: 312 ANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKY 371
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 372 LGLPEQFG 379
Score = 55.8 bits (133), Expect = 6e-08
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
+KARY++ N+I +A + SY W S+ I ++++GTR+ IG+G IR+ D +V+
Sbjct: 506 MKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN-VVDSH 564
Query: 365 LAQPAA*YNRLLQLNVKELLQ--PGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
+P + L++ L Q + W+ LQ ++ L + D
Sbjct: 565 PPRPLLTDEQHNGLSLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRL 624
Query: 423 VWRPGKRGIYTVRS 436
+W G YTVRS
Sbjct: 625 IWSYNSTGDYTVRS 638
>At1g24640 hypothetical protein
Length = 1270
Score = 171 bits (432), Expect = 1e-42
Identities = 86/184 (46%), Positives = 112/184 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W YLR ++L LGF KW WIM+CV SV Y VL+N G I+
Sbjct: 534 MAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQ 593
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LF+LC +GLT L++KA+ G L G++ P HLLF DD C+
Sbjct: 594 RGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCK 653
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ + L+ IL +Y +A+GQ IN KS I F + V K I L + G Y
Sbjct: 654 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 713
Query: 181 LGLP 184
LGLP
Sbjct: 714 LGLP 717
Score = 50.1 bits (118), Expect = 3e-06
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
LK+RY+ +A S+ W+SI ++ +G + ++G+G + V+ D W+ + G
Sbjct: 848 LKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNG 907
Query: 365 LAQPAA*YNRL--LQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDER 422
P N + + L VK LL P W+ +VL + + S A D
Sbjct: 908 FRAPWR-KNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFF 965
Query: 423 VWRPGKRGIYTVRSA 437
VW+ K G ++V+SA
Sbjct: 966 VWKLNKSGDFSVKSA 980
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 170 bits (430), Expect = 2e-42
Identities = 85/188 (45%), Positives = 111/188 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W++L++V+ R GF + W W++ CV SV Y L+N +G ++P
Sbjct: 466 MAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPT 525
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP LFILC + L+ L +A+ L GVRV P HLLF DD F +
Sbjct: 526 RGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSK 585
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ N L ILS Y ASGQ INF KS + FS K + IL++ TGKY
Sbjct: 586 SDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKY 645
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 646 LGLPEHFG 653
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/140 (25%), Positives = 61/140 (42%), Gaps = 16/140 (11%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
L +Y ++ E + S+ W+SI ++K+G W I NG+K+ ++ D WL
Sbjct: 780 LLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWL---S 836
Query: 365 LAQPAA*YNRLLQ----LNVKELLQPGQKSWNLD----VLQHYLSSQSVFEAMNTLLFNS 416
+++P L+ L V L+ W+ + +L +Y + A +S
Sbjct: 837 ISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYENLIKQLPAP-----SS 891
Query: 417 TAYDERVWRPGKRGIYTVRS 436
D+ W P K G YT RS
Sbjct: 892 RGVDKLAWLPVKSGQYTSRS 911
>At4g10830 putative protein
Length = 1294
Score = 169 bits (429), Expect = 3e-42
Identities = 87/188 (46%), Positives = 107/188 (56%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K D+SKAYDR+ W +L M GF W WIM V+SV Y VLVN G I P
Sbjct: 933 MAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQ 992
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSPYLFILCA L LI GD+ G+R+ G P THL F DD FC+
Sbjct: 993 RGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQ 1052
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ R ALK++ +YE SGQ+IN KS I F V + + NIL + GKY
Sbjct: 1053 SNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKY 1112
Query: 181 LGLPSVIG 188
LGLP G
Sbjct: 1113 LGLPEQFG 1120
Score = 41.6 bits (96), Expect = 0.001
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKI 352
+KARY+R ++I +A + SY W S+ + ++K+G+R+ +G+G +
Sbjct: 1247 MKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At2g11240 pseudogene
Length = 1044
Score = 169 bits (429), Expect = 3e-42
Identities = 83/188 (44%), Positives = 113/188 (59%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K +MSKAYDRI W++++ VM +GF W WI+ C+ +V Y L+N ++G + P
Sbjct: 397 MAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPE 456
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LFI+C++ L+ L KA+ G L G+RV G P HLLF DD FCR
Sbjct: 457 RGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCR 516
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
+ + IL YE+ASGQ IN KS I FS+ K IL + + GKY
Sbjct: 517 SDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKY 576
Query: 181 LGLPSVIG 188
LGLP + G
Sbjct: 577 LGLPKMFG 584
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 168 bits (425), Expect = 8e-42
Identities = 86/187 (45%), Positives = 112/187 (58%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ K DMSKAYDR+ W +L +M LGF+ KW WIM CV SV Y VL+N + G I+P
Sbjct: 549 MAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPT 608
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDPLSP LF+LC + L +++KAE G + G++ + HLLF DD L C+
Sbjct: 609 RGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCK 668
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
AT +E L LS Y SGQ IN KS I F KNV K I + +++ TGKY
Sbjct: 669 ATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKY 728
Query: 181 LGLPSVI 187
LGLP +
Sbjct: 729 LGLPECL 735
Score = 67.0 bits (162), Expect = 2e-11
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
++RY+ + A +G+ SY W+SI ++ QG R IGNG K V+ D+WL +G
Sbjct: 864 QSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSN 923
Query: 366 AQPAA*YNRL----LQLNVKELLQPGQKSWNLDVLQHYL--SSQSVFEAMNTLLFNSTAY 419
+P NR + L V +L+ P ++WNL++L+ + L F
Sbjct: 924 RRP---LNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFKE--- 977
Query: 420 DERVWRPGKRGIYTVRSASRF 440
D W G+Y+V++ F
Sbjct: 978 DSFCWLHSHNGLYSVKTGYEF 998
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 167 bits (424), Expect = 1e-41
Identities = 75/185 (40%), Positives = 113/185 (60%)
Query: 4 KVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGL 63
K+D++KA+D+I W ++ +M ++GF KW WIM C+ + Y +L+N + I+P G+
Sbjct: 29 KLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGI 88
Query: 64 RKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT* 123
R+GDP+SPYL++LC +GL++LI + LHG + P +HLLF D +FC+AT
Sbjct: 89 RQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATL 148
Query: 124 REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKYLGL 183
E L N+L +YE ASGQ +NFQKS I F K + + +L + G+YLGL
Sbjct: 149 EECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGL 208
Query: 184 PSVIG 188
P +G
Sbjct: 209 PEFVG 213
Score = 55.8 bits (133), Expect = 6e-08
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
KA+Y+ + + +A + SY WKSI ++ +G ++ GNG+ I++++D WL
Sbjct: 341 KAKYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPP 400
Query: 366 AQPAA*YNRLL-QLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERVW 424
P + + QL V +LL G+ WN D+L + + + A D W
Sbjct: 401 RPPVGTCDSIYSQLKVSDLLIEGR--WNEDLLCKLIHQNDIPHIRAIRPSITGANDAITW 458
Query: 425 RPGKRGIYTVRS 436
G Y+V+S
Sbjct: 459 IYTHDGNYSVKS 470
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 166 bits (421), Expect = 2e-41
Identities = 82/184 (44%), Positives = 113/184 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
++ K DMSKAYDR+ W +L+ ++L LGF++ W W+M CV SV Y VL+N + G I P
Sbjct: 300 MVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPH 359
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSP+LF+LC + L ++++AE G + G++ P+ HLLF DD L C+
Sbjct: 360 RGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICK 419
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ E + + LS Y SGQ IN +KS I F V K I+N + TGKY
Sbjct: 420 ASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKY 479
Query: 181 LGLP 184
LGLP
Sbjct: 480 LGLP 483
Score = 66.6 bits (161), Expect = 3e-11
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
LK+RYY + A KG SY W+SI ++ G + IGNG+ V+ D W+ +
Sbjct: 614 LKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDK 673
Query: 365 LAQPAA*YNRL-LQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
+P + + +QL V +L+ P ++WNL++L+ + + + + ++ D
Sbjct: 674 PRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEI-QIICQQRPMASRQDSFC 732
Query: 424 WRPGKRGIYTVRSASRFC 441
W G+YTV+S C
Sbjct: 733 WFGTNHGLYTVKSEYDLC 750
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 164 bits (414), Expect = 1e-40
Identities = 82/184 (44%), Positives = 112/184 (60%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
++ K DMSKAYDR+ W +L+ +++ LGF+ KW WIM CV SV Y VL+N + G I P
Sbjct: 523 MVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPE 582
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDP+SP+LF+LC + L ++ +AE + G++ P+ HLLFVDD L CR
Sbjct: 583 RGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCR 642
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
AT + + LS Y SGQ IN +KS I F V K I N +++ TGKY
Sbjct: 643 ATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKY 702
Query: 181 LGLP 184
LGLP
Sbjct: 703 LGLP 706
Score = 65.5 bits (158), Expect = 7e-11
Identities = 38/132 (28%), Positives = 64/132 (47%), Gaps = 2/132 (1%)
Query: 306 KARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGL 365
K+RY+ A +G SY W+SI ++ G + IGNG++ V+ D+WL +G
Sbjct: 838 KSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHS 897
Query: 366 AQPAA*YNRL-LQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERVW 424
+P ++ + + + V L+ P ++WNL L + V M+ S+ D W
Sbjct: 898 RRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPLISSE-DSYCW 956
Query: 425 RPGKRGIYTVRS 436
G+YTV+S
Sbjct: 957 AGTNNGLYTVKS 968
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 161 bits (407), Expect = 9e-40
Identities = 74/175 (42%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ +K DMSKAYDR+ W +LR +ML++GF KW WI+ C+ SV YK+L+N +G I P
Sbjct: 518 MAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPS 577
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R+GDP+SP+LFILC + L + + AE G + G+++ +P+ +HLLF DD FC+
Sbjct: 578 RGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCK 637
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI 175
A + + +IL +Y +ASGQQ+N KS + F V +I N ++V++ I
Sbjct: 638 ADPLQGKEIIDILRLYGEASGQQLNPDKSSVMFGHEVDN----SIRNTIKVSLGI 688
Score = 60.5 bits (145), Expect = 2e-09
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 305 LKARYYRRNAIFEANKGNNLSYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGG 364
L+ RY+R + + K N S+ W+SI A P++ G R IG+G RV++D W+ +
Sbjct: 765 LRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFP 824
Query: 365 LAQPAA*YN-RLLQLNVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV 423
+ N R L V +L+ P K W L LQ + + + + D+
Sbjct: 825 PRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFS 884
Query: 424 WRPGKRGIYTVRS 436
W K G YTV+S
Sbjct: 885 WSFTKSGNYTVKS 897
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 136 bits (342), Expect = 3e-32
Identities = 69/184 (37%), Positives = 101/184 (54%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
++LK+D+ KAYDRI W+ L + G W WIM CVE ++L N E P
Sbjct: 1110 MLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPL 1169
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLF+LC + L LI+ + +++ P +H+ F DD LF
Sbjct: 1170 RGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAE 1229
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ ++ L+ +L + ASGQ+++ +KS+I+FSKNV I + GKY
Sbjct: 1230 ASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKY 1289
Query: 181 LGLP 184
LG+P
Sbjct: 1290 LGVP 1293
Score = 42.4 bits (98), Expect = 6e-04
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 322 NNLSYVWKSIHEAI-PMVKQGTRWKIGNGDKIRVFQDRWLVNGGLAQPAA*YNRLLQL-- 378
+N S W+S+ + ++ + W IG+G +IR + DRWL +A + L Q+
Sbjct: 1443 SNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLC 1502
Query: 379 NVKELLQPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNST-AYDERVWRPGKRGIYTVRSA 437
++L + G W++ + +++ + + ++ + T A+D W G +TV+SA
Sbjct: 1503 TARDLWRDG-TGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSA 1561
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 133 bits (334), Expect = 3e-31
Identities = 67/184 (36%), Positives = 103/184 (55%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
++LK+D+ KAYDR+ W++L+ + G W IM V VL N E +P
Sbjct: 434 MLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPA 493
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDPLSPYLF+LC + L LI+ + G+ + + V G +H+ F DD LF
Sbjct: 494 RGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAE 553
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A+ ++ ++ +L + +ASGQ+++ +KS+IFFS NV + I + GKY
Sbjct: 554 ASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKY 613
Query: 181 LGLP 184
LG+P
Sbjct: 614 LGMP 617
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/144 (27%), Positives = 65/144 (44%), Gaps = 36/144 (25%)
Query: 325 SYVWKSIHEAI-PMVKQGTRWKIGNGDKIRVFQDRWLVNGGLAQPAA*YNRLLQLNVKEL 383
S W+S+ + +V +G W G+G IR + DRWL L +P L++L ++
Sbjct: 770 SSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWL----LQEP------LVELGT-DM 818
Query: 384 LQPGQK------------SWNLDVLQHYL----SSQSVFEAMNTLLFNSTAYDERVWRPG 427
+ G++ WNL++L YL + + + L N DE W+
Sbjct: 819 IPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNG---DEISWKGT 875
Query: 428 KRGIYTVRSASRFCLTELVEGDYG 451
+ G +TVRSA L++GD G
Sbjct: 876 QDGAFTVRSA-----YSLLQGDVG 894
>At3g31420 hypothetical protein
Length = 1491
Score = 130 bits (328), Expect = 1e-30
Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 16/168 (9%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
+ LK D++KAYDR+ W++L M ++GF+ KW IM+CV V++ VL+N G I P
Sbjct: 756 MALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPE 815
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
G+R GDPLSPYLFILCA+ L+ +I +AE L G+R+ T P +HLLF DD F
Sbjct: 816 RGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTL 875
Query: 121 AT*REVNALK---------NILSIYEDAS-------GQQINFQKSEIF 152
A R A+K ++L I+ + +Q N +K E+F
Sbjct: 876 ANQRSCTAIKEPDTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELF 923
Score = 50.1 bits (118), Expect = 3e-06
Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 43/174 (24%)
Query: 265 LSIKEMVVWVLRIYICSIWHFLAIKSGG*CLNRSY**QDFLKARYYRRNAIFEANKGNNL 324
L KE+ + L + WH L + CL L+ RY+ + A +G
Sbjct: 1011 LGFKELENFNLALLGKQTWHLLQHPN---CLMARV-----LRGRYFPETNVMNAVQGRRA 1062
Query: 325 SYVWKSIHEAIPMVKQGTRWKIGNGDKIRVFQDRWLVNGGLAQPAA*YNRLLQLNVKELL 384
S+VWKSI ++K+G R +G+G I + D WL L P A Y +
Sbjct: 1063 SFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWL---PLHSPRAPYKQ---------- 1109
Query: 385 QPGQKSWNLDVLQHYLSSQSVFEAMNTLLFNSTAYDERV-WRPGKRGIYTVRSA 437
+A LL STA D+ + W K G+YTV+SA
Sbjct: 1110 ---------------------EDAPEQLLVCSTARDDLIGWHYTKDGMYTVKSA 1142
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 121 bits (304), Expect = 8e-28
Identities = 66/184 (35%), Positives = 93/184 (49%), Gaps = 17/184 (9%)
Query: 1 LILKVDMSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPG 60
++LK+D+ KAYDRI W++L + G W IM CV + +L N E P
Sbjct: 386 MLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPE 445
Query: 61 SGLRKGDPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCR 120
GLR+GDP+SPYLF+LC + L I+ A GRGD + + G P +H+ F DD LF
Sbjct: 446 RGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAE 505
Query: 121 AT*REVNALKNILSIYEDASGQQINFQKSEIFFSKNVGA*AKVNILNILQVNIAI*TGKY 180
A + Q+++ +KS+IFFS NV + I + GKY
Sbjct: 506 A-----------------SVAQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKY 548
Query: 181 LGLP 184
LG+P
Sbjct: 549 LGMP 552
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.344 0.154 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,558,217
Number of Sequences: 26719
Number of extensions: 424222
Number of successful extensions: 1656
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 132
length of query: 520
length of database: 11,318,596
effective HSP length: 104
effective length of query: 416
effective length of database: 8,539,820
effective search space: 3552565120
effective search space used: 3552565120
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC147202.9